LOC120565057


Basic Information

Item Value
gene id LOC120565057
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13328617 ~ 13335098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810377.1
CAGGCTTGGACGGCTGTTAAATTTTAGCTGCTAACGTTAAGTGAAGTTTTAGTTGGTGTTCGTGTTCGTGTGTTCCTGTAACCAAAACTTCTGAGTAGCGAGCAGGTGCCCAGCTCAAGCAGAGTTATTCTTCACTGTGTGTGGCTATAGTCCAACATCCGATGGCAGAACAACCCTTGATAGAGTGGAGCAGTGGTCTCTTTGACTGTTTTGAAGATGTGGCGACTTgtTGCTATGGTTTCTGGTGCTGCCCTTGCCTTGCCATCACAGTTTCAGAAAGATTTGGAGAGAGCCGTTGTCTCCCATTATGTGACATGTGCACCCCCGCCATTACTGCATGTTGTGGGATACCTCTGTGTCTGCCGCCTCCAGCCGTCCTGTCTCTAAGGGCTGCCATGCGAAACAGATATGGTATCAAGGGTTCTCTCTGTAAGGACATTGCAGCTGCCTGTTTCTGTGGGACGTGCGCCTGGTGTCAGATGCATCGTGAGTTAAAACATCGCAAAAAAACTCCCACCGTCATCGTCATGCAAAATCAAGTCAATTTCCAAATGCAGCCTGCTCCTGTGATGATGATTCCTGGATACCCGCCCCAAGCTGGTTTTGTGAACCAACCAGGAGGCTTTGTGATGTCATCCTGAGCTCTGTGGcttcttgtttgtgtgttgttgtcttCTGAAGGAAATATTATGCAGCTTAGATCCTActagtgtttgttttgttacacCAAAGACAAAATGTAAGTGTATGTCTATGAGTGAAAACCAAAGTAGTAATCACAGTGATTTGTGTCCCCTTGGCATCAGAGTATGCTGAATCCGTTTCAGTCTATTAATAATTATGACAATTATTGTTCCAAAGTCCTTGGGAAAAccccttaattaaaaaaaaaatgttgttcatTTACAGCCACCATGGGCATCAGGTCAAGGATGAAGGAGATAATTGTAGTCCtttaaaatctttatttataattaaagaaataataaagaTGTATTAGGATACGAACTACAGTACTACTCAGCAACATCACAGTGCAGTTTATCCTAAAGCACAGCAGAGGGCACTAACGTTATATGAACACAAATTAAGTCATCCATCCATTGCAATCCTCCTCTTTGGTAAAATAAAACGCTTTGACAACTTATGCTAGTAAAGACCTACTACTAAAGATTTTGGCACTAAAATAGACCAAAAACTTATAAAAAgccacacaaatacacatattcTATTTGATGGCCATGTGGTCTTAATAAGCATACTAAACAGCTAGCATCTTAACTATGTACATTAAGAGATTTTTGCAGTGCAATCTAAAAATGAAGTATATACagtttttacataaataaatataaaagctACAGTAACTTACTTTGATGGAGTCACACACTGCACAAAAGCAACAACTCGAAGGAAGACCACACTACACACAGAACAAGAACACTGAACATGTAACACTCTAAGGTGATGGGTTCTAGGTGGttcagacagaaacacaatgtGACAATCAGAGAACATATacctactgtacatacagttGCTCGGGCATTTTTTAACAATTGTAGTTTAATTACAGTGATACTTGATCATACAGTTCCACAAATAGATATACCGGATCAAAACTtccatttatattaataatacttattGACTATCGGCTCAAACTATTTTAATTTTAGTCTCAAGATTCCCTGTTtataaaagaagagaaaataatTCCTAATTCtatattcttttcctaaaccttgTTCTACTGAATGCCACCTCTTCATGATGAAGTGCTTCTTTGTGAGATTAGCCTACATCATAGCGCCCCTTAAATGACTATATACTGTAAGCATACCTGTTACTGTTCTGTCTGTTTGTGGGCAAGTTCTATTCACAGAAATGTAACCAAAGAATAATagataaataacaataaatagaAGAAATTCACAATTCAGAGATTTCTTAAAGATGAAAGAAAGCTTGTCCACCAAGAAGTTTACAAAACCAAGGGCACAAAATATCTTCTAGGCActctcatttcattttcatttcagagagaaagagagagagcattcctattggctgttctctGTGAGTgagattttgtttgtttttttagtgaTGTGAAAGCTGCTGTGTTCTTGCTAACTTCAATTGGATAATGAAGAAATCCACCCAGCTTTAAACTGTGACCCTACTGTGTAATATTCATGGTCTTATAAGTTCTATTTTCTGACCTATtgttatacattgttttaatttttcatcTTGTAATGTTTCATGGTTGAAATAAGAAAATGATAATTAAATTCTTattcttta
>XM_039810378.1
CAGGCTTGGACGGCTGTTAAATTTTAGCTGCTAACGTTAAGTGAAGTTTTAGTTGGTGTTCGTGTTCGTGTGTTCCTGTAACCAAAACTTCTGAGTAGCGAGCAGGTGCCCAGCTCAAGCAGTCCAACATCCGATGGCAGAACAACCCTTGATAGAGTGGAGCAGTGGTCTCTTTGACTGTTTTGAAGATGTGGCGACTTgtTGCTATGGTTTCTGGTGCTGCCCTTGCCTTGCCATCACAGTTTCAGAAAGATTTGGAGAGAGCCGTTGTCTCCCATTATGTGACATGTGCACCCCCGCCATTACTGCATGTTGTGGGATACCTCTGTGTCTGCCGCCTCCAGCCGTCCTGTCTCTAAGGGCTGCCATGCGAAACAGATATGGTATCAAGGGTTCTCTCTGTAAGGACATTGCAGCTGCCTGTTTCTGTGGGACGTGCGCCTGGTGTCAGATGCATCGTGAGTTAAAACATCGCAAAAAAACTCCCACCGTCATCGTCATGCAAAATCAAGTCAATTTCCAAATGCAGCCTGCTCCTGTGATGATGATTCCTGGATACCCGCCCCAAGCTGGTTTTGTGAACCAACCAGGAGGCTTTGTGATGTCATCCTGAGCTCTGTGGcttcttgtttgtgtgttgttgtcttCTGAAGGAAATATTATGCAGCTTAGATCCTActagtgtttgttttgttacacCAAAGACAAAATGTAAGTGTATGTCTATGAGTGAAAACCAAAGTAGTAATCACAGTGATTTGTGTCCCCTTGGCATCAGAGTATGCTGAATCCGTTTCAGTCTATTAATAATTATGACAATTATTGTTCCAAAGTCCTTGGGAAAAccccttaattaaaaaaaaaatgttgttcatTTACAGCCACCATGGGCATCAGGTCAAGGATGAAGGAGATAATTGTAGTCCtttaaaatctttatttataattaaagaaataataaagaTGTATTAGGATACGAACTACAGTACTACTCAGCAACATCACAGTGCAGTTTATCCTAAAGCACAGCAGAGGGCACTAACGTTATATGAACACAAATTAAGTCATCCATCCATTGCAATCCTCCTCTTTGGTAAAATAAAACGCTTTGACAACTTATGCTAGTAAAGACCTACTACTAAAGATTTTGGCACTAAAATAGACCAAAAACTTATAAAAAgccacacaaatacacatattcTATTTGATGGCCATGTGGTCTTAATAAGCATACTAAACAGCTAGCATCTTAACTATGTACATTAAGAGATTTTTGCAGTGCAATCTAAAAATGAAGTATATACagtttttacataaataaatataaaagctACAGTAACTTACTTTGATGGAGTCACACACTGCACAAAAGCAACAACTCGAAGGAAGACCACACTACACACAGAACAAGAACACTGAACATGTAACACTCTAAGGTGATGGGTTCTAGGTGGttcagacagaaacacaatgtGACAATCAGAGAACATATacctactgtacatacagttGCTCGGGCATTTTTTAACAATTGTAGTTTAATTACAGTGATACTTGATCATACAGTTCCACAAATAGATATACCGGATCAAAACTtccatttatattaataatacttattGACTATCGGCTCAAACTATTTTAATTTTAGTCTCAAGATTCCCTGTTtataaaagaagagaaaataatTCCTAATTCtatattcttttcctaaaccttgTTCTACTGAATGCCACCTCTTCATGATGAAGTGCTTCTTTGTGAGATTAGCCTACATCATAGCGCCCCTTAAATGACTATATACTGTAAGCATACCTGTTACTGTTCTGTCTGTTTGTGGGCAAGTTCTATTCACAGAAATGTAACCAAAGAATAATagataaataacaataaatagaAGAAATTCACAATTCAGAGATTTCTTAAAGATGAAAGAAAGCTTGTCCACCAAGAAGTTTACAAAACCAAGGGCACAAAATATCTTCTAGGCActctcatttcattttcatttcagagagaaagagagagagcattcctattggctgttctctGTGAGTgagattttgtttgtttttttagtgaTGTGAAAGCTGCTGTGTTCTTGCTAACTTCAATTGGATAATGAAGAAATCCACCCAGCTTTAAACTGTGACCCTACTGTGTAATATTCATGGTCTTATAAGTTCTATTTTCTGACCTATtgttatacattgttttaatttttcatcTTGTAATGTTTCATGGTTGAAATAAGAAAATGATAATTAAATTCTTattcttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810377.1 True 2310 mRNA 0.38 5 13328617 13335098
XM_039810378.1 False 2282 mRNA 0.38 5 13328617 13335098

Neighbor

gene id symbol gene type direction distance location
LOC120565891 NA coding upstream 7920 13317776 ~ 13320697 (+)
ttc22 ttc22 coding upstream 23383 13293866 ~ 13305234 (+)
lepr NA coding upstream 70056 13211481 ~ 13258561 (+)
dnajc6 dnajc6,LOC102786137 coding upstream 124248 13163705 ~ 13204369 (+)
ak4 ak4,LOC102785469 coding upstream 169976 13149850 ~ 13158641 (+)
LOC120565910 NA coding downstream 21274 13356372 ~ 13359125 (+)
LOC120565922 NA coding downstream 32196 13367294 ~ 13369007 (+)
insl5a LOC104957723,LOC104925860,LOC103372744 coding downstream 78263 13413361 ~ 13415999 (+)
swt1 LOC102799620 coding downstream 460996 13796094 ~ 13820008 (+)
hmcn1 hmcn1 coding downstream 521936 13857034 ~ 13947979 (+)
G95040 NA non-coding upstream 181822 13146305 ~ 13146795 (+)
G95027 jak1,LOC102785183 non-coding upstream 216297 13107689 ~ 13112320 (+)
G95002 NA non-coding upstream 332963 12995235 ~ 12995654 (+)
G94997 NA non-coding upstream 462366 12865912 ~ 12866251 (+)
G94813 NA non-coding upstream 1408580 11916631 ~ 11920037 (+)
LOC120564967 NA non-coding downstream 37346 13372444 ~ 13375668 (+)
G95114 NA non-coding downstream 64732 13399830 ~ 13400932 (+)
G95139 NA non-coding downstream 151938 13487036 ~ 13487366 (+)
G95148 NA non-coding downstream 175095 13510193 ~ 13514065 (+)
LOC120565805 NA non-coding downstream 369269 13704367 ~ 13747072 (+)
G95046 NA other upstream 108245 13173025 ~ 13220372 (+)
raver2 raver2 other upstream 228172 13005568 ~ 13100445 (+)
ror1 ror1 other upstream 462775 12742805 ~ 12865842 (+)
lrp8 LOC103355569 other upstream 885537 12161638 ~ 12443080 (+)
znhit6 znhit6,LOC102790327 other upstream 1506735 11789135 ~ 11821882 (+)
LOC120565776 NA other downstream 636 13335734 ~ 13342098 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other downstream 44300 13379398 ~ 13382747 (+)
LOC120564965 LOC102299696 other downstream 55725 13390823 ~ 13399744 (+)
G95460 NA other downstream 1284260 14619358 ~ 14621413 (+)
LOC120565380 NA other downstream 1354284 14689382 ~ 14704353 (+)

Expression


Co-expression Network