hnrnpm (hnrnpm,LOC100701615,LOC102779678)


Basic Information

Item Value
gene id hnrnpm
gene name hnrnpm,LOC100701615,LOC102779678
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21376432 ~ 21384204 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810552.1
ATTTCTGCTCACATACACTGCTCTCTCCGCCATTTTCGTAGCTGGTGTCGCAGTGGAGATCGGCGTAGTTTTTTTGTTTCGCTAAGGTCCGTTTTGAAAGCGATTGACTTGTTATTATCAAATAATATAGTCTTCGATAACACAGTTTAATTTAGCAAGGCAATAAACTGCAAAAGAAGATGTCCACCGAGCAGGCCGAAAATACTAACGTGACCGAGAAAGcaggccagcagcagcagccgggAGAAGTGAATGGGAAAGCCAAGCATGACTCCAATTCAAGCAGGAAGGAGAGGCCCCAGAAAAGAGGTGGAGGCGGGCGCTACGAACCCTATGGAAACGTGAACAAAAGATACCGCGTTTTTGTCAGCAACATTCCATATGATGTCAAATGGCAAGCTCTCAAAGACCTGATGAAAGAAAAAGTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGCGGAAGGCAAATCGAGGGGTTGTGCTGTTGTTGAGTTTAGGACTGAGGAGCTAATGAAGAAAGCAGTGGAGAAGGTCAACAAGCACAACCTCAATGGACGACCCCTAAAAGTGAAAGAGgaCCCTGATGGTGTGATTGCTCAGAGAGAAATCAACAAGGCTCAAGGTGGAGGCCCTCCAGGAGGCCATGGTGGAATGGGAGGAATGGGAGCAATGGGAGGAATGGGAGGAATGGATCGCATGAACATGGATCGAATGGGCCCTGGACCAAATGGCTCCATGGTCAACATTCCTCCTAGCCTGATGAACAACCCCAACATCCCCAATGAGATCATCCACGGTCTCCAGGCTGGAAGGATTGGCAGCACTGTCTTTGTGGCTAATCTTGACTACAAAGTGGGCTGGAAGAAGCTGAAAGAGGTATTCAGCATGGCGGGCATGGTGGTAAGGGCTGACATTCTTGAAGACAAGGATGGGAAAAGCAGAGGCATGGGCACAGTAACATTTGATATGCCCATTGAAGCAGTCCAAGCTGTCTCTATGTTTAATGGGCAGCTGCTATTTAACAGAGTCATGCACGTCAAACTGGATGAGAAGTCCCTGCCCAAAGATTTTGGACCACCGgacagagctgctgctgctgctgccgctctTCCCCGTGGCCTGAGTGGTATTGGTTTGGGCCTGGGACCTGGTGGCCAGCCCATTGATGCTAACCAGCTcaatagaggaggaggaggtggaggtggaggaatGGGCAACatgggccctggagGAATGGATGGAATGGGCTTTGGCAACATGGGTGGACGTATGGGAGGAGGCGGAGGCGGAATGGACAACTTTGGAGGAATGAACAACATGGATCGTTTTGGTTCTTCAGGAATGGGCAGGATGAACGAGATGGACCGTGGGATTGGTGGTGCTTTTGACAGGGAGTTTGGGCGGAATGAAATGGGAATGTCTCGCAATAATTTTGGAGACTCCTTTGAAAGAGGAATGGgaaACTCTCTGGGTATGGACCGCATGAACTCTGGGATGGACCGCCTGGGAACCAGCATGGATCGCATGGCAGGGATGGACCGGATGGGCATGGACAGGATGGACCGTGGGTCTGACCTGGACAGAATAGGTTCTGGGTTCGACCGGATGGGTTCGGGGATGGACCGGCTGGGGCCCAGTATGGACAGGCTTGGACCTGGCCTGGACCGTATGAGCTCCAGCATGGACCGCCTCGGCCCAGCTGGGTTTGAACGCTTGGGCCCGTCTGGTTTGGATCGCATGGGTTCTGGCCTGGACTTTGGCTCCCCAATGGGTATGGATCGCATGGGCAACACCGGGCTTGACAGAATGGCCAGCAGCTTTGACCGCATTGGCTCAGCTGGAGGAATTGACCGCTTCCCCTCCGGTGGCATCGACCGCATGAGCTCTAGCATGGATCGGATGGGATCTGGAGGTGTTGGTGGTCAGTTTGAGCGCTCTGCTGACATGGATCGTGGATTTGGTGGGAATTCCTTTGGTGGAGCTGGAGGGCCTGGAACTGGGGGAAGCAATGTCAGGAAGGGATGCCAGATCTTTGTCAGAAATctGCCATTTGACTTCAACTGGAAGATGCTGAAGGATACCTTCAACACATGCGGCATGGTTCAGTATGCTGATATTAAGATGGAGAACGGCAAGTCCAAGGGCTGTGGTGTGGTTCGCTTCGACACCCCTGAAACTGCTGAGCGCGTCTGCCGGACCATGAATGGCTATCGGCTGAATGGAAGAGAAATTGATGTTAGGATTGATAGGAATGCATAAGTTATTTGTCTGTGCTACATCTGACATTTCATTTAGTCCAAATGCTCTATCATCTGAATTGCCCTTCAGCACATTCATATTAGATTCACTTGGTTTGTTAGGTATTTGTAACAGTGAAAGTTGTTAGTAATTTGTCATTGTCGGGAGTGTTTTAGTTTTTGcttaaattttacttttttttttttttttttttagagaccaaatttttaattttttttttttttttcgtcatgCTTCAGCTGTCATTGCCTTTTGTTCTATAAGGTGTTTTGATAAATAAACCTCAATATATGAAATGCt
>XM_039810553.1
CTATTTCTGCTCACATACACTGCTCTCTCCGCCATTTTCGTAGCTGGTGTCGCAGTGGAGATCGGCGTAGTTTTTTTGTTTCGCTAAGGTCCGTTTTGAAAGCGATTGACTTGTTATTATCAAATAATATAGTCTTCGATAACACAGTTTAATTTAGCAAGGCAATAAACTGCAAAAGAAGATGTCCACCGAGCAGGCCGAAAATACTAACGTGACCGAGAAAGcaggccagcagcagcagccgggAGAAGTGAATGGGAAAGCCAAGCATGACTCCAATTCAAGCAGGAAGGAGAGGCCCCAGAAAAGAGGTGGAGGCGGGCGCTACGAACCCTATGGAAACGTGAACAAAAGATACCGCGTTTTTGTCAGCAACATTCCATATGATGTCAAATGGCAAGCTCTCAAAGACCTGATGAAAGAAAAAGTGGGTGAGGTAACGTACGTGGAACACTTAATGGACGCGGAAGGCAAATCGAGGGGTTGTGCTGTTGTTGAGTTTAGGACTGAGGAGCTAATGAAGAAAGCAGTGGAGAAGGTCAACAAGCACAACCTCAATGGACGACCCCTAAAAGTGAAAGAGgaCCCTGATGGTGTGATTGCTCAGAGAGAAATCAACAAGGCTCAAGGTGGAGGCCCTCCAGGAGGCCATGGTGGAATGGGAGGAATGGGAGCAATGGGAGGAATGGGAGGAATGGATCGCATGAACATGGATCGAATGGGCCCTGGACCAAATGGCTCCATGGTCAACATTCCTCCTAGCCTGATGAACAACCCCAACATCCCCAATGAGATCATCCACGGTCTCCAGGCTGGAAGGATTGGCAGCACTGTCTTTGTGGCTAATCTTGACTACAAAGTGGGCTGGAAGAAGCTGAAAGAGGTATTCAGCATGGCGGGCATGGTGGTAAGGGCTGACATTCTTGAAGACAAGGATGGGAAAAGCAGAGGCATGGGCACAGTAACATTTGATATGCCCATTGAAGCAGTCCAAGCTGTCTCTATGTTTAATGGGCAGCTGCTATTTAACAGAGTCATGCACGTCAAACTGGATGAGAAGTCCCTGCCCAAAGATTTTGGACCACCGgacagagctgctgctgctgctgccgctctTCCCCGTGGCCTGAGTGGTATTGGTTTGGGCCTGGGACCTGGTGGCCAGCCCATTGATGCTAACCAGCTcaatagaggaggaggaggtggaggtggaggaatGGGCAACatgggccctggagGAATGGATGGAATGGGCTTTGGCAACATGGGTGGACGTATGGGAGGAGGCGGAGGCGGAATGGACAACTTTGGAGGAATGAACAACATGGATCGTTTTGGTTCTTCAGGAATGGGCAGGATGAACGgaaACTCTCTGGGTATGGACCGCATGAACTCTGGGATGGACCGCCTGGGAACCAGCATGGATCGCATGGCAGGGATGGACCGGATGGGCATGGACAGGATGGACCGTGGGTCTGACCTGGACAGAATAGGTTCTGGGTTCGACCGGATGGGTTCGGGGATGGACCGGCTGGGGCCCAGTATGGACAGGCTTGGACCTGGCCTGGACCGTATGAGCTCCAGCATGGACCGCCTCGGCCCAGCTGGGTTTGAACGCTTGGGCCCGTCTGGTTTGGATCGCATGGGTTCTGGCCTGGACTTTGGCTCCCCAATGGGTATGGATCGCATGGGCAACACCGGGCTTGACAGAATGGCCAGCAGCTTTGACCGCATTGGCTCAGCTGGAGGAATTGACCGCTTCCCCTCCGGTGGCATCGACCGCATGAGCTCTAGCATGGATCGGATGGGATCTGGAGGTGTTGGTGGTCAGTTTGAGCGCTCTGCTGACATGGATCGTGGATTTGGTGGGAATTCCTTTGGTGGAGCTGGAGGGCCTGGAACTGGGGGAAGCAATGTCAGGAAGGGATGCCAGATCTTTGTCAGAAATctGCCATTTGACTTCAACTGGAAGATGCTGAAGGATACCTTCAACACATGCGGCATGGTTCAGTATGCTGATATTAAGATGGAGAACGGCAAGTCCAAGGGCTGTGGTGTGGTTCGCTTCGACACCCCTGAAACTGCTGAGCGCGTCTGCCGGACCATGAATGGCTATCGGCTGAATGGAAGAGAAATTGATGTTAGGATTGATAGGAATGCATAAGTTATTTGTCTGTGCTACATCTGACATTTCATTTAGTCCAAATGCTCTATCATCTGAATTGCCCTTCAGCACATTCATATTAGATTCACTTGGTTTGTTAGGTATTTGTAACAGTGAAAGTTGTTAGTAATTTGTCATTGTCGGGAGTGTTTTAGTTTTTGcttaaattttacttttttttttttttttttttagagaccaaatttttaattttttttttttttttcgtcatgCTTCAGCTGTCATTGCCTTTTGTTCTATAAGGTGTTTTGATAAATAAACCTCAATATATGAAATGCt
>XM_039810554.1
CAGAAAAGAGGTGGAGGCGGGCGCTACGAACCCTATGGAAACGTGAACAAAAGATACCGCGTTTTTGTCAGCAACATTCCATATGATGTCAAATGGCAAGCTCTCAAAGACCTGATGAAAGAAAAAGGGTTGTGCTGTTGTTGAGTTTAGGACTGAGGAGCTAATGAAGAAAGCAGTGGAGAAGGTCAACAAGCACAACCTCAATGGACGACCCCTAAAAGTGAAAGAGgaCCCTGATGGTGTGATTGCTCAGAGAGAAATCAACAAGGCTCAAGGTGGAGGCCCTCCAGGAGGCCATGGTGGAATGGGAGGAATGGGAGCAATGGGAGGAATGGGAGGAATGGATCGCATGAACATGGATCGAATGGGCCCTGGACCAAATGGCTCCATGGTCAACATTCCTCCTAGCCTGATGAACAACCCCAACATCCCCAATGAGATCATCCACGGTCTCCAGGCTGGAAGGATTGGCAGCACTGTCTTTGTGGCTAATCTTGACTACAAAGTGGGCTGGAAGAAGCTGAAAGAGGTATTCAGCATGGCGGGCATGGTGGTAAGGGCTGACATTCTTGAAGACAAGGATGGGAAAAGCAGAGGCATGGGCACAGTAACATTTGATATGCCCATTGAAGCAGTCCAAGCTGTCTCTATGTTTAATGGGCAGCTGCTATTTAACAGAGTCATGCACGTCAAACTGGATGAGAAGTCCCTGCCCAAAGATTTTGGACCACCGgacagagctgctgctgctgctgccgctctTCCCCGTGGCCTGAGTGGTATTGGTTTGGGCCTGGGACCTGGTGGCCAGCCCATTGATGCTAACCAGCTcaatagaggaggaggaggtggaggtggaggaatGGGCAACatgggccctggagGAATGGATGGAATGGGCTTTGGCAACATGGGTGGACGTATGGGAGGAGGCGGAGGCGGAATGGACAACTTTGGAGGAATGAACAACATGGATCGTTTTGGTTCTTCAGGAATGGGCAGGATGAACGAGATGGACCGTGGGATTGGTGGTGCTTTTGACAGGGAGTTTGGGCGGAATGAAATGGGAATGTCTCGCAATAATTTTGGAGACTCCTTTGAAAGAGGAATGGgaaACTCTCTGGGTATGGACCGCATGAACTCTGGGATGGACCGCCTGGGAACCAGCATGGATCGCATGGCAGGGATGGACCGGATGGGCATGGACAGGATGGACCGTGGGTCTGACCTGGACAGAATAGGTTCTGGGTTCGACCGGATGGGTTCGGGGATGGACCGGCTGGGGCCCAGTATGGACAGGCTTGGACCTGGCCTGGACCGTATGAGCTCCAGCATGGACCGCCTCGGCCCAGCTGGGTTTGAACGCTTGGGCCCGTCTGGTTTGGATCGCATGGGTTCTGGCCTGGACTTTGGCTCCCCAATGGGTATGGATCGCATGGGCAACACCGGGCTTGACAGAATGGCCAGCAGCTTTGACCGCATTGGCTCAGCTGGAGGAATTGACCGCTTCCCCTCCGGTGGCATCGACCGCATGAGCTCTAGCATGGATCGGATGGGATCTGGAGGTGTTGGTGGTCAGTTTGAGCGCTCTGCTGACATGGATCGTGGATTTGGTGGGAATTCCTTTGGTGGAGCTGGAGGGCCTGGAACTGGGGGAAGCAATGTCAGGAAGGGATGCCAGATCTTTGTCAGAAATctGCCATTTGACTTCAACTGGAAGATGCTGAAGGATACCTTCAACACATGCGGCATGGTTCAGTATGCTGATATTAAGATGGAGAACGGCAAGTCCAAGGGCTGTGGTGTGGTTCGCTTCGACACCCCTGAAACTGCTGAGCGCGTCTGCCGGACCATGAATGGCTATCGGCTGAATGGAAGAGAAATTGATGTTAGGATTGATAGGAATGCATAAGTTATTTGTCTGTGCTACATCTGACATTTCATTTAGTCCAAATGCTCTATCATCTGAATTGCCCTTCAGCACATTCATATTAGATTCACTTGGTTTGTTAGGTATTTGTAACAGTGAAAGTTGTTAGTAATTTGTCATTGTCGGGAGTGTTTTAGTTTTTGcttaaattttacttttttttttttttttttttagagaccaaatttttaattttttttttttttttcgtcatgCTTCAGCTGTCATTGCCTTTTGTTCTATAAGGTGTTTTGATAAATAAACCTCAATATATGAAATGCt

Function

symbol description
hnrnpm Predicted to enable mRNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome and regulation of mRNA stability involved in response to oxidative stress. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of post-mRNA release spliceosomal complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human HNRNPM (heterogeneous nuclear ribonucleoprotein M).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein M isoform X2

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810552.1 True 2564 mRNA 0.49 16 21376434 21384204
XM_039810553.1 False 2464 mRNA 0.49 15 21376432 21384204
XM_039810554.1 False 2212 mRNA 0.50 14 21377466 21384204

Neighbor

gene id symbol gene type direction distance location
obscna LOC102302552,LOC103364793,LOC102212669,LOC108230617 coding upstream 67863 21260927 ~ 21308569 (+)
zgc:153738 iqca1 coding upstream 126271 21242345 ~ 21250161 (+)
mindy4 NA coding upstream 150066 21217731 ~ 21226366 (+)
nexn nexn coding upstream 161247 21202932 ~ 21215185 (+)
tmem47 tmem47,LOC102234870,LOC103464126 coding upstream 187358 21182803 ~ 21189074 (+)
timm44 timm44,LOC100710737,LOC102216179,LOC102779393,LOC102311498,LOC101473596 coding downstream 318 21384522 ~ 21392514 (+)
LOC120565175 NA coding downstream 155023 21539227 ~ 21552254 (+)
tmprss9 tmprss9 coding downstream 174999 21559203 ~ 21571799 (+)
enc3 LOC103373679,LOC103393865,LOC104920233,LOC107100952,LOC100702697,LOC102237431 coding downstream 193190 21577394 ~ 21592150 (+)
s1pr4 s1pr4,LOC102777112,LOC100705658,LOC107100766 coding downstream 466838 21851042 ~ 21853412 (+)
G97011 dmap1 non-coding upstream 2899 21372941 ~ 21373533 (+)
G96963 LOC102235645,LOC103464121,LOC107392658,LOC103138531,LOC103371596,LOC106936986,LOC107100776,LOC101155672 non-coding upstream 61912 21310912 ~ 21314520 (+)
G96906 LOC103364786,LOC104920247 non-coding upstream 202125 21127063 ~ 21174307 (+)
G96898 NA non-coding upstream 314128 21061672 ~ 21062304 (+)
G96871 NA non-coding upstream 367122 21005731 ~ 21009310 (+)
G97064 NA non-coding downstream 274346 21658550 ~ 21676349 (+)
G97096 NA non-coding downstream 359209 21743413 ~ 21744681 (+)
G97170 cope non-coding downstream 556901 21941105 ~ 21944561 (+)
G97181 NA non-coding downstream 613209 21997413 ~ 21997743 (+)
LOC120565815 NA non-coding downstream 621571 22005775 ~ 22007353 (+)
prkacba prkacb other upstream 811608 20548999 ~ 20564824 (+)
G96513 NA other upstream 1844755 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 2590796 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 2711319 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 3517021 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 27132 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 170690 21554894 ~ 21557731 (+)
G97093 NA other downstream 306693 21690897 ~ 21782000 (+)
G97321 NA other downstream 899442 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1101307 22485511 ~ 22491235 (+)

Expression


Co-expression Network