LOC120565175


Basic Information

Item Value
gene id LOC120565175
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21539227 ~ 21552254 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810652.1
cccgGTGTTAATACgtcaccggtgccttaacaaccgttatctaccggaccgaatagcaactcGGATTTCGTTGCCTTATTTTGCctccgcttctctctgatgctccgaaaacggggatgatgatgtgtcacctttttcagcccttctgttTATAGACCAACAGAACTAATTAAGATCAAGAAATCAAGAAAACAAACTGCAGATTAAGTggttcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacatgcaAGAGGCTGCTTTGCTCCCTGCATCTTTTAAGGTCGGATCTTGAGGGTCTCTGCTGTTATATGaatatgaaatatgaataaGACATCAATGTTTTAACAGTTAGGTCTGCTCTGGAGCTCGAAAAACTCTCACATGAACTGTTCTCCTCTCCTCAGGATGGAGGCCCTGTTAAATGAGTGGCTTTGGCGGGAGGAGTACTGGCTTCCTCCTGGCATCCGCTGGCAGGACATTGAGATGAAGGAAGACGAGGGTCGCTTCCCTCTACCCAGGGATCTCATCTACACCTTGCCACTGGCCTTCGCCTTTATAGCCTTCAGAATTGTCTTTGAGAGGCTCATCGCCGTCCCATTAAGCAAACATTTTGATGTGAAGGACCGGATTAGGATTCAAGCCGCTTCCATCCCAAAGCTGGAGACCTTCTACAAACAGAACAGTGCGCAACCATCGCAAAGTGAGGTGGTGAGCTTGTGTAAGCAATGTGGACTTTCCCAGAGAAAGATCCAGACCTGGTTCAGACGCAGAAGGCACCAGGACCGACCCAGCAACACCAAAAAGTTCTGCGAGGCCTCCTGGCGTTTTGTCTTTTACCTCGTATCGTTCACTGCGGGGCTCGGCTCTTTAATTAATACTCCGTGGTTCTGGGATCACAGAGAGTGTTGGAGGGGTTATCCCAAGCAGCCCGTGGCCGAGGCTCATTACTGGTATTACATCTTGGAAATGGGCTTCTATTTGTCGCTGCTTCTGTGCGTCTCTGTGGACATCAAGCGAAAAGACTTCAAGGAGCAGGTCATTCATCACATCGCCACCATATTCCTCATCGGTTTCTCCTACTGTGCCAACTATGTGAGGGTTGGCACTCTGGTGATGCTGGTGCACGATTCTTCTGACTTCCTTCTCGAGTCTGCCAAGATGCTTCACTATGCTGGCTGGACGAAGACGTGCGACTCACTGTTTGTCATCTTCTCTCTGGTCTTCCTGGTGACGAGGCTGGTGGTGTTTCCTTGCAGAGTGGTCCACACAACCTTGGTGGTGTCTGTAGAATTCTTCCAGCCCTTCTTTGGTTATTATTTCTTCAACGCCCTTCTGTTAGTGCTGCAAGCATTGCACATCTTCTGGGCTAATCTCATCCTGCGCATGGTCTACAAATTTGTGTTCCTGGGCAAGGTGGAGCGTGATGAACGCAGCGATGAGGAAAGTGAGgtggatgatgaagaggaggagcctgaggaagaagaggatgagTGCAGCTGGGAGCAAAGAAAGGTTGCAATCAACTCCAAACTGGCATCGCtggctaacaactgtgtcctgAACAACCTGACCAACCAGAGGAATATAAACAGCAGACTGCCCAAAGCCAGATAGTGGAGCAACCTCGTTATGCGTCGACCGAGCCTTTCCAGAAGATTGTATTATTTACCCTTTCCGCCTATTGGTGATTAACTCATTTCTGACATATGATACATCCACATGGCTTGTGTACATCCCACGGAGTCCACTGATGATTTCAGACAAGGGTTGGTCTGCATCCTGCTTATCTTCAAAAAAAGAAGGTGAAGAAGCACAGAtgaagaaacgccatcattaCTGTCACCCATACCACTGCATACTGATAAAATATATATGGCAAAACAAGGAGTGAAATTTCCTGAACAACAAATCATATGTTTTtgcatattttgtattaatgctGTTTCTTTTCATTGTATTATAATAACTAGTTTGTAAATACATAAGGATACAATTTCCTGACCTGTGCTATAATGCATTTATCCTTTCTTTGGTCAACAAGGAAAACtaaatgtgttttacacaaaatcaaactgttctatctaaaataatatgttttaaaCAGAGCGAAGCTAGAATCTAATAGTAATTCACTCTCCCAGCTTTGCATCCACATACACAATACAGTATGGTTGATTGAACATAGACTATCAAAGAATATTGATCGTAGTAAATCTGTTGATAAACCACTTCATATATCTAACAGGTCAATTTTATGTTGTTGCAACTTGTGACAGAATCTAAATGGCTACTGCAGAAGTCCCATAAAGTTGTATTTTTCTGTGATAGGATTTGATTTAGGTCTAAGCTCACGTCTTAGCAGAGATATGGTGCCCCCTGGTGCAAAAATAAGAATGTATCGTTGTAGAGAAAGCACTCTCCGTGTCTGATAAAAATGAtgcctttacaaaaaaaaatgactgctCCTAAAAATAAGGACCTAAACCACatttatgtgagtgtgtgttgtgtttgtttttctactTTGAATAACATGTTACCATGTAGGCAGCATGATTTCTCAATGAGGTCTTTTGGTTAAGGTTTGCTGAACTGGACTTTATTTTTGTGCTTTGGCTGATGTTTTTACACTATTCTGTGATAAACACTTAATATTAAGCTCTGTGTGTAAGTAGGATTGCCATCACTGGACAGGTTTTACTGTGACGAATTTTAATGTTTAGCTTGAAATGTTGGTGAGGCAGCGGCTGGTACATAGTACCTAGTGCACACAGATGGGCATTAGAGAAATGTGAGATATTTTAGATAGCAGAACAATCTACAAAGGTCAAATGCTTTATAGCTCAGATGAAATGTAAGCAGATGAAATGTAAGGATTTGATGATTTTTATAAAAGATGGCATATTTTGATATCACTAGACCAGACTGCTAGGAACAAGAGGTCACTTGGATTTTAACATGTATTTTAACACAGCGAAAGATGTGGCTCAGTGTCTGTAAAGTGTTTCCAGGCTAGGCTCTAGATAGTGCATCATTATTGTCAACAGTACAGCACAGAGATCTTGTTCAGAAACCATCAAACTACAGTACACTCATACACAGTATTCACTACCCAAAACTGGTGTTAGGTTAGTGAGAGCAACTCTTCAAGATAAGTGGTTAGAGTAgaaatgtgtctgtctctgaacGGGGACTTAACAGCACTGGGGCCCACACATGATCAAGTTATAGAGCACTAAAAGTGCTGATCCACTATATAACGCGCCATGACCTCCACTAGAATattgttttataaataaaagaaaatagatatAAAACCAGGAGCAATGTCACGTTTCCACAAAAGTAACACTTGACTGTTCTCTTATGACTGCACACGGATGCATTATTGATTGAGTGGCCAGTTGGAAAGTTTTAATAAATTACTTCTATTGAATAAATTAA
>XM_039810653.1
ATATTCTGTCATGGAACAACAAGGGGGCGGTTTGACGGTGTTTCTGACATGTGAAGTAGATACATGTGATTAAAAAGGCAGGTTGTTTGATGATAGGCTATATGGCTGTTCGGTTCCAGGCTGTTCGGCGATAGCGGGATGATGGAGGCCCTGTTAAATGAGTGGCTTTGGCGGGAGGAGTACTGGCTTCCTCCTGGCATCCGCTGGCAGGACATTGAGATGAAGGAAGACGAGGGTCGCTTCCCTCTACCCAGGGATCTCATCTACACCTTGCCACTGGCCTTCGCCTTTATAGCCTTCAGAATTGTCTTTGAGAGGCTCATCGCCGTCCCATTAAGCAAACATTTTGATGTGAAGGACCGGATTAGGATTCAAGCCGCTTCCATCCCAAAGCTGGAGACCTTCTACAAACAGAACAGTGCGCAACCATCGCAAAGTGAGGTGGTGAGCTTGTGTAAGCAATGTGGACTTTCCCAGAGAAAGATCCAGACCTGGTTCAGACGCAGAAGGCACCAGGACCGACCCAGCAACACCAAAAAGTTCTGCGAGGCCTCCTGGCGTTTTGTCTTTTACCTCGTATCGTTCACTGCGGGGCTCGGCTCTTTAATTAATACTCCGTGGTTCTGGGATCACAGAGAGTGTTGGAGGGGTTATCCCAAGCAGCCCGTGGCCGAGGCTCATTACTGGTATTACATCTTGGAAATGGGCTTCTATTTGTCGCTGCTTCTGTGCGTCTCTGTGGACATCAAGCGAAAAGACTTCAAGGAGCAGGTCATTCATCACATCGCCACCATATTCCTCATCGGTTTCTCCTACTGTGCCAACTATGTGAGGGTTGGCACTCTGGTGATGCTGGTGCACGATTCTTCTGACTTCCTTCTCGAGTCTGCCAAGATGCTTCACTATGCTGGCTGGACGAAGACGTGCGACTCACTGTTTGTCATCTTCTCTCTGGTCTTCCTGGTGACGAGGCTGGTGGTGTTTCCTTGCAGAGTGGTCCACACAACCTTGGTGGTGTCTGTAGAATTCTTCCAGCCCTTCTTTGGTTATTATTTCTTCAACGCCCTTCTGTTAGTGCTGCAAGCATTGCACATCTTCTGGGCTAATCTCATCCTGCGCATGGTCTACAAATTTGTGTTCCTGGGCAAGGTGGAGCGTGATGAACGCAGCGATGAGGAAAGTGAGgtggatgatgaagaggaggagcctgaggaagaagaggatgagTGCAGCTGGGAGCAAAGAAAGGTTGCAATCAACTCCAAACTGGCATCGCtggctaacaactgtgtcctgAACAACCTGACCAACCAGAGGAATATAAACAGCAGACTGCCCAAAGCCAGATAGTGGAGCAACCTCGTTATGCGTCGACCGAGCCTTTCCAGAAGATTGTATTATTTACCCTTTCCGCCTATTGGTGATTAACTCATTTCTGACATATGATACATCCACATGGCTTGTGTACATCCCACGGAGTCCACTGATGATTTCAGACAAGGGTTGGTCTGCATCCTGCTTATCTTCAAAAAAAGAAGGTGAAGAAGCACAGAtgaagaaacgccatcattaCTGTCACCCATACCACTGCATACTGATAAAATATATATGGCAAAACAAGGAGTGAAATTTCCTGAACAACAAATCATATGTTTTtgcatattttgtattaatgctGTTTCTTTTCATTGTATTATAATAACTAGTTTGTAAATACATAAGGATACAATTTCCTGACCTGTGCTATAATGCATTTATCCTTTCTTTGGTCAACAAGGAAAACtaaatgtgttttacacaaaatcaaactgttctatctaaaataatatgttttaaaCAGAGCGAAGCTAGAATCTAATAGTAATTCACTCTCCCAGCTTTGCATCCACATACACAATACAGTATGGTTGATTGAACATAGACTATCAAAGAATATTGATCGTAGTAAATCTGTTGATAAACCACTTCATATATCTAACAGGTCAATTTTATGTTGTTGCAACTTGTGACAGAATCTAAATGGCTACTGCAGAAGTCCCATAAAGTTGTATTTTTCTGTGATAGGATTTGATTTAGGTCTAAGCTCACGTCTTAGCAGAGATATGGTGCCCCCTGGTGCAAAAATAAGAATGTATCGTTGTAGAGAAAGCACTCTCCGTGTCTGATAAAAATGAtgcctttacaaaaaaaaatgactgctCCTAAAAATAAGGACCTAAACCACatttatgtgagtgtgtgttgtgtttgtttttctactTTGAATAACATGTTACCATGTAGGCAGCATGATTTCTCAATGAGGTCTTTTGGTTAAGGTTTGCTGAACTGGACTTTATTTTTGTGCTTTGGCTGATGTTTTTACACTATTCTGTGATAAACACTTAATATTAAGCTCTGTGTGTAAGTAGGATTGCCATCACTGGACAGGTTTTACTGTGACGAATTTTAATGTTTAGCTTGAAATGTTGGTGAGGCAGCGGCTGGTACATAGTACCTAGTGCACACAGATGGGCATTAGAGAAATGTGAGATATTTTAGATAGCAGAACAATCTACAAAGGTCAAATGCTTTATAGCTCAGATGAAATGTAAGCAGATGAAATGTAAGGATTTGATGATTTTTATAAAAGATGGCATATTTTGATATCACTAGACCAGACTGCTAGGAACAAGAGGTCACTTGGATTTTAACATGTATTTTAACACAGCGAAAGATGTGGCTCAGTGTCTGTAAAGTGTTTCCAGGCTAGGCTCTAGATAGTGCATCATTATTGTCAACAGTACAGCACAGAGATCTTGTTCAGAAACCATCAAACTACAGTACACTCATACACAGTATTCACTACCCAAAACTGGTGTTAGGTTAGTGAGAGCAACTCTTCAAGATAAGTGGTTAGAGTAgaaatgtgtctgtctctgaacGGGGACTTAACAGCACTGGGGCCCACACATGATCAAGTTATAGAGCACTAAAAGTGCTGATCCACTATATAACGCGCCATGACCTCCACTAGAATattgttttataaataaaagaaaatagatatAAAACCAGGAGCAATGTCACGTTTCCACAAAAGTAACACTTGACTGTTCTCTTATGACTGCACACGGATGCATTATTGATTGAGTGGCCAGTTGGAAAGTTTTAATAAATTACTTCTATTGAATAAATTAA
>XM_039810654.1
CCCGCCCACACAGAAGAAGCAGGTTGCGTAACTCTCCcatttgctgctgtgcatttctAATCTCCATCAAAGGAGCGCGGACAGGATGGAGGCCCTGTTAAATGAGTGGCTTTGGCGGGAGGAGTACTGGCTTCCTCCTGGCATCCGCTGGCAGGACATTGAGATGAAGGAAGACGAGGGTCGCTTCCCTCTACCCAGGGATCTCATCTACACCTTGCCACTGGCCTTCGCCTTTATAGCCTTCAGAATTGTCTTTGAGAGGCTCATCGCCGTCCCATTAAGCAAACATTTTGATGTGAAGGACCGGATTAGGATTCAAGCCGCTTCCATCCCAAAGCTGGAGACCTTCTACAAACAGAACAGTGCGCAACCATCGCAAAGTGAGGTGGTGAGCTTGTGTAAGCAATGTGGACTTTCCCAGAGAAAGATCCAGACCTGGTTCAGACGCAGAAGGCACCAGGACCGACCCAGCAACACCAAAAAGTTCTGCGAGGCCTCCTGGCGTTTTGTCTTTTACCTCGTATCGTTCACTGCGGGGCTCGGCTCTTTAATTAATACTCCGTGGTTCTGGGATCACAGAGAGTGTTGGAGGGGTTATCCCAAGCAGCCCGTGGCCGAGGCTCATTACTGGTATTACATCTTGGAAATGGGCTTCTATTTGTCGCTGCTTCTGTGCGTCTCTGTGGACATCAAGCGAAAAGACTTCAAGGAGCAGGTCATTCATCACATCGCCACCATATTCCTCATCGGTTTCTCCTACTGTGCCAACTATGTGAGGGTTGGCACTCTGGTGATGCTGGTGCACGATTCTTCTGACTTCCTTCTCGAGTCTGCCAAGATGCTTCACTATGCTGGCTGGACGAAGACGTGCGACTCACTGTTTGTCATCTTCTCTCTGGTCTTCCTGGTGACGAGGCTGGTGGTGTTTCCTTGCAGAGTGGTCCACACAACCTTGGTGGTGTCTGTAGAATTCTTCCAGCCCTTCTTTGGTTATTATTTCTTCAACGCCCTTCTGTTAGTGCTGCAAGCATTGCACATCTTCTGGGCTAATCTCATCCTGCGCATGGTCTACAAATTTGTGTTCCTGGGCAAGGTGGAGCGTGATGAACGCAGCGATGAGGAAAGTGAGgtggatgatgaagaggaggagcctgaggaagaagaggatgagTGCAGCTGGGAGCAAAGAAAGGTTGCAATCAACTCCAAACTGGCATCGCtggctaacaactgtgtcctgAACAACCTGACCAACCAGAGGAATATAAACAGCAGACTGCCCAAAGCCAGATAGTGGAGCAACCTCGTTATGCGTCGACCGAGCCTTTCCAGAAGATTGTATTATTTACCCTTTCCGCCTATTGGTGATTAACTCATTTCTGACATATGATACATCCACATGGCTTGTGTACATCCCACGGAGTCCACTGATGATTTCAGACAAGGGTTGGTCTGCATCCTGCTTATCTTCAAAAAAAGAAGGTGAAGAAGCACAGAtgaagaaacgccatcattaCTGTCACCCATACCACTGCATACTGATAAAATATATATGGCAAAACAAGGAGTGAAATTTCCTGAACAACAAATCATATGTTTTtgcatattttgtattaatgctGTTTCTTTTCATTGTATTATAATAACTAGTTTGTAAATACATAAGGATACAATTTCCTGACCTGTGCTATAATGCATTTATCCTTTCTTTGGTCAACAAGGAAAACtaaatgtgttttacacaaaatcaaactgttctatctaaaataatatgttttaaaCAGAGCGAAGCTAGAATCTAATAGTAATTCACTCTCCCAGCTTTGCATCCACATACACAATACAGTATGGTTGATTGAACATAGACTATCAAAGAATATTGATCGTAGTAAATCTGTTGATAAACCACTTCATATATCTAACAGGTCAATTTTATGTTGTTGCAACTTGTGACAGAATCTAAATGGCTACTGCAGAAGTCCCATAAAGTTGTATTTTTCTGTGATAGGATTTGATTTAGGTCTAAGCTCACGTCTTAGCAGAGATATGGTGCCCCCTGGTGCAAAAATAAGAATGTATCGTTGTAGAGAAAGCACTCTCCGTGTCTGATAAAAATGAtgcctttacaaaaaaaaatgactgctCCTAAAAATAAGGACCTAAACCACatttatgtgagtgtgtgttgtgtttgtttttctactTTGAATAACATGTTACCATGTAGGCAGCATGATTTCTCAATGAGGTCTTTTGGTTAAGGTTTGCTGAACTGGACTTTATTTTTGTGCTTTGGCTGATGTTTTTACACTATTCTGTGATAAACACTTAATATTAAGCTCTGTGTGTAAGTAGGATTGCCATCACTGGACAGGTTTTACTGTGACGAATTTTAATGTTTAGCTTGAAATGTTGGTGAGGCAGCGGCTGGTACATAGTACCTAGTGCACACAGATGGGCATTAGAGAAATGTGAGATATTTTAGATAGCAGAACAATCTACAAAGGTCAAATGCTTTATAGCTCAGATGAAATGTAAGCAGATGAAATGTAAGGATTTGATGATTTTTATAAAAGATGGCATATTTTGATATCACTAGACCAGACTGCTAGGAACAAGAGGTCACTTGGATTTTAACATGTATTTTAACACAGCGAAAGATGTGGCTCAGTGTCTGTAAAGTGTTTCCAGGCTAGGCTCTAGATAGTGCATCATTATTGTCAACAGTACAGCACAGAGATCTTGTTCAGAAACCATCAAACTACAGTACACTCATACACAGTATTCACTACCCAAAACTGGTGTTAGGTTAGTGAGAGCAACTCTTCAAGATAAGTGGTTAGAGTAgaaatgtgtctgtctctgaacGGGGACTTAACAGCACTGGGGCCCACACATGATCAAGTTATAGAGCACTAAAAGTGCTGATCCACTATATAACGCGCCATGACCTCCACTAGAATattgttttataaataaaagaaaatagatatAAAACCAGGAGCAATGTCACGTTTCCACAAAAGTAACACTTGACTGTTCTCTTATGACTGCACACGGATGCATTATTGATTGAGTGGCCAGTTGGAAAGTTTTAATAAATTACTTCTATTGAATAAATTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810652.1 True 3506 mRNA 0.42 10 21540199 21552254
XM_039810653.1 False 3180 mRNA 0.42 11 21539331 21552254
XM_039810654.1 False 3124 mRNA 0.42 11 21539227 21552254

Neighbor

gene id symbol gene type direction distance location
timm44 timm44,LOC100710737,LOC102216179,LOC102779393,LOC102311498,LOC101473596 coding upstream 146713 21384522 ~ 21392514 (+)
hnrnpm hnrnpm,LOC100701615,LOC102779678 coding upstream 155023 21376432 ~ 21384204 (+)
obscna LOC102302552,LOC103364793,LOC102212669,LOC108230617 coding upstream 230658 21260927 ~ 21308569 (+)
zgc:153738 iqca1 coding upstream 289066 21242345 ~ 21250161 (+)
mindy4 NA coding upstream 312861 21217731 ~ 21226366 (+)
tmprss9 tmprss9 coding downstream 6949 21559203 ~ 21571799 (+)
enc3 LOC103373679,LOC103393865,LOC104920233,LOC107100952,LOC100702697,LOC102237431 coding downstream 25140 21577394 ~ 21592150 (+)
s1pr4 s1pr4,LOC102777112,LOC100705658,LOC107100766 coding downstream 298788 21851042 ~ 21853412 (+)
ncln ncln,LOC102776228 coding downstream 343216 21895470 ~ 21909198 (+)
tnfaip8l1 tnfaip8l1,LOC104918070,LOC103363933 coding downstream 393922 21946176 ~ 21962548 (+)
G97009 NA non-coding upstream 82427 21368118 ~ 21456800 (+)
G97011 dmap1 non-coding upstream 165694 21372941 ~ 21373533 (+)
G96963 LOC102235645,LOC103464121,LOC107392658,LOC103138531,LOC103371596,LOC106936986,LOC107100776,LOC101155672 non-coding upstream 224707 21310912 ~ 21314520 (+)
G96906 LOC103364786,LOC104920247 non-coding upstream 364920 21127063 ~ 21174307 (+)
G96898 NA non-coding upstream 476923 21061672 ~ 21062304 (+)
G97064 NA non-coding downstream 106296 21658550 ~ 21676349 (+)
G97096 NA non-coding downstream 191159 21743413 ~ 21744681 (+)
G97170 cope non-coding downstream 388851 21941105 ~ 21944561 (+)
G97181 NA non-coding downstream 445159 21997413 ~ 21997743 (+)
LOC120565815 NA non-coding downstream 453521 22005775 ~ 22007353 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other upstream 97669 21411336 ~ 21441558 (+)
prkacba prkacb other upstream 974403 20548999 ~ 20564824 (+)
G96513 NA other upstream 2007550 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 2753591 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 2874114 18646703 ~ 18665113 (+)
lsm7 lsm7,LOC102793261 other downstream 2640 21554894 ~ 21557731 (+)
G97093 NA other downstream 138643 21690897 ~ 21782000 (+)
G97321 NA other downstream 731392 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 933257 22485511 ~ 22491235 (+)
soat1 soat1,LOC102796196 other downstream 940703 22492957 ~ 22501015 (+)

Expression


Co-expression Network