LOC120565295 (tsta3,LOC104953080)


Basic Information

Item Value
gene id LOC120565295
gene name tsta3,LOC104953080
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7868591 ~ 7873986 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810958.1
TCTATCTGGCTCTCTAGTTTGCTGAACATGTAGCTAGTTTACAGCTAACGGGTGAGAAGCAACTACTTACCGTTATTTGTTAAGCTCGGATTTAACGTTGTTTTACTGCTCTAGAAGGGAAGCATACTTCTAATGTATTAGAAGTTATACAATTTACTTGCGACAGAGTTGTCACATTCATTTTTAGTTAGTTTATGTGGCGTCATTAGTATAACACTCGCTGAAAGGAATGAATGTGACAGCGGTTACCTGCTAGCATAGCTAACATCAACTTTGGCtaataccgttagctagcttgtCTGGCTGGCATTTGCACAACACGGTTCTGTACAGTGGTCACCTCTAATGAGCAGGTAACAACAAACAAGGTGGCCTTGGGATTTCGGCTACGTCACCCGAAAATAGAGATGAGCTGTCAGGGTGATCACACCCCTCCATTGAGGGTGTTGGTGACCGGAGGATCCGGCTTGGTGGGCAGGGCTATACAGCATGTGGTCAAAGAGGAGAGGGGAGCCAAGGAAGGGGAAGAATGGATATTTCTCTCCTCCAAAGATGCCAACCTCACGAACGTGGAGGAGACACGGGCAGTGTTTGAAAAATATCGGCCGACCCACGTCATTCATCTGGCTGCTATGGTTGGGGGGCTTTTCAAGAACATGAAGTACAACCTGGACTTTTGGAGAAACAATGTCTACATCAACGATAACGTGCTGCAGGCAGCACATGAAGTTGGCGCGGTCAAGGTTGTTTCCTGCCTGTCCACCTGCATCTTTCCTGATAAAACCACCTACCCTATCAACGAGACCATGATCCATAACGGACCACCTCATGAGTCGAACTTCGGCTATGCCTATGCAAAGAGAATGATTGATGTTCACAACAGGGCGTATTTCCAGCAGCATGGGAGTTGCTATACAGCTGTGATTCCCACTAATGTGTTTGGTCCCCATGACAACTTCAGCATTGAGGACGGTCATGTGCTGCCAGGCCTAATTCACAAAGCTTACATTGCTCAAAAGGAGGGGAAGCCCCTGGTGGTCTGGGGCTCCGGCACTCCCAGAAGACAGTTCATCTACTCTTTAGACCTGGCTCGTCTCTTCCTGTGGGTCTTGAGAGAGTATTCAGAGGTCGATCCAATCATTCTCTCTGTTGGAGAGGAGGATGAAGTGTCCATCAAAGAAGCTGCAGAAGCAGTTGTGCAAGCACTGGACTTTAAAGGAGAAGTGGTGTTTGATACCAGTAAAGCAGACGGCCAGTTCAAAAAGACAGCCAGCAATGCAAAGCTGCACCGCTACCTGCCGGACTTCACCTTCACACCCTTCAAACAAGCTTTAAAGGAAACCTGTGAATGGTTTGTTGCCAACTATGACGCAGCCAGGAAGTGAACGCTCTGCCAATCAATTTGGTACAAAGTCTGTCGATCATTGACCCGCTCTGttggaagaggagaagaaaacaaGGTGGCTCATGTGCAAAGGTAGATGGATGTGACTGAATTGTGTGTTCTCAGTGAGCTAGACTAAatatactcagcaaaaaaaaagaaacgccctgtcactttcaactgcttttatattttaaacaaacttaacatatgcaaatatttgTATGCACATTAAAAGATCGAACAACTAAGACATAAACTGAACAATTTTCACAGACAGGTGACTGACAGAAATGGAATAATGTCCCTGAGCAAATTGGGGGggggtcaaaatcaaaagtagccctcagtatctggtgtggccaccagctgcattaagtactgcagtgcatctcctcctcatgcACTGCACCAGACTAGCcagttctttctttttttaagattatttttggggggcttttccctttattttgaaagtggatatagatgaaaggggggagagatatgggggacgacacgcagcaaagggcagcaggtcggattcaaaccctgcgccgctgcaggactcagccgaCATGGTAGcgaacactcttactgggtgagctagaggtcgccccagaCTGGCCAGTTCTTGCGGTTGTTGACGATCAGCTGTGCTTCCTGTCTCCCTGTAGCCCTGTCTTAGGCGTCTCACAGTAGGGACATTGCAATGTATTGCCCTGGCCACATCTGCTGTCCACATGCCTCAGGCACGTTCACGCAGATTAGCAGGGACCCTGGGCATCTTTCTGTTGGTGTATTTCAGAGTCAGTAGAAGTCTCTTTACTTTCCTAATTTTCTTATAACTGACCTTAATTGCCTACCACCTGCAAGCTGTTATTGGCTTTTCAACCGCTCAACAGGTGCATGTTCATTAGTTGTTTAGTTCATCGAACAAGCatggaaaacattgtttaaacccTTTACAATGTAGATCTCTAAAGTTAtgatttttacaaaagtatctttaaaatagtgtcctgaaaaaggggcgtttcttttttttgctgagtttcTCACTTAGAATTCATCTGCAACACTTCTCTTAATAGAAAAGTATAAAACAATTTGTCTACTGACCTGTATGTAGAATGTTGTTCATTATGGCAGTGTTAATTATAAGTAAAGTTAATTGGGGGTTCAATCTGTCAGGATTAGTCTTTTTCAGCATTCATCACTTACCTCTTGAAGGGTTTTTAAGTTCTTGATTCACTGTATTTATTGAACAAAACTGTTATGTGCTGTTTGAATAGTGGATTGGATGTTTTCTTATTCAGTATATTTGCACTGagcaaattaaatgttttaataatgtctTA
>XM_039810959.1
TAGTTTGCTGAACATGTAGCTAGTTTACAGCTAACGGATGAGCTGTCAGGGTGATCACACCCCTCCATTGAGGGTGTTGGTGACCGGAGGATCCGGCTTGGTGGGCAGGGCTATACAGCATGTGGTCAAAGAGGAGAGGGGAGCCAAGGAAGGGGAAGAATGGATATTTCTCTCCTCCAAAGATGCCAACCTCACGAACGTGGAGGAGACACGGGCAGTGTTTGAAAAATATCGGCCGACCCACGTCATTCATCTGGCTGCTATGGTTGGGGGGCTTTTCAAGAACATGAAGTACAACCTGGACTTTTGGAGAAACAATGTCTACATCAACGATAACGTGCTGCAGGCAGCACATGAAGTTGGCGCGGTCAAGGTTGTTTCCTGCCTGTCCACCTGCATCTTTCCTGATAAAACCACCTACCCTATCAACGAGACCATGATCCATAACGGACCACCTCATGAGTCGAACTTCGGCTATGCCTATGCAAAGAGAATGATTGATGTTCACAACAGGGCGTATTTCCAGCAGCATGGGAGTTGCTATACAGCTGTGATTCCCACTAATGTGTTTGGTCCCCATGACAACTTCAGCATTGAGGACGGTCATGTGCTGCCAGGCCTAATTCACAAAGCTTACATTGCTCAAAAGGAGGGGAAGCCCCTGGTGGTCTGGGGCTCCGGCACTCCCAGAAGACAGTTCATCTACTCTTTAGACCTGGCTCGTCTCTTCCTGTGGGTCTTGAGAGAGTATTCAGAGGTCGATCCAATCATTCTCTCTGTTGGAGAGGAGGATGAAGTGTCCATCAAAGAAGCTGCAGAAGCAGTTGTGCAAGCACTGGACTTTAAAGGAGAAGTGGTGTTTGATACCAGTAAAGCAGACGGCCAGTTCAAAAAGACAGCCAGCAATGCAAAGCTGCACCGCTACCTGCCGGACTTCACCTTCACACCCTTCAAACAAGCTTTAAAGGAAACCTGTGAATGGTTTGTTGCCAACTATGACGCAGCCAGGAAGTGAACGCTCTGCCAATCAATTTGGTACAAAGTCTGTCGATCATTGACCCGCTCTGttggaagaggagaagaaaacaaGGTGGCTCATGTGCAAAGGTAGATGGATGTGACTGAATTGTGTGTTCTCAGTGAGCTAGACTAAatatactcagcaaaaaaaaagaaacgccctgtcactttcaactgcttttatattttaaacaaacttaacatatgcaaatatttgTATGCACATTAAAAGATCGAACAACTAAGACATAAACTGAACAATTTTCACAGACAGGTGACTGACAGAAATGGAATAATGTCCCTGAGCAAATTGGGGGggggtcaaaatcaaaagtagccctcagtatctggtgtggccaccagctgcattaagtactgcagtgcatctcctcctcatgcACTGCACCAGACTAGCcagttctttctttttttaagattatttttggggggcttttccctttattttgaaagtggatatagatgaaaggggggagagatatgggggacgacacgcagcaaagggcagcaggtcggattcaaaccctgcgccgctgcaggactcagccgaCATGGTAGcgaacactcttactgggtgagctagaggtcgccccagaCTGGCCAGTTCTTGCGGTTGTTGACGATCAGCTGTGCTTCCTGTCTCCCTGTAGCCCTGTCTTAGGCGTCTCACAGTAGGGACATTGCAATGTATTGCCCTGGCCACATCTGCTGTCCACATGCCTCAGGCACGTTCACGCAGATTAGCAGGGACCCTGGGCATCTTTCTGTTGGTGTATTTCAGAGTCAGTAGAAGTCTCTTTACTTTCCTAATTTTCTTATAACTGACCTTAATTGCCTACCACCTGCAAGCTGTTATTGGCTTTTCAACCGCTCAACAGGTGCATGTTCATTAGTTGTTTAGTTCATCGAACAAGCatggaaaacattgtttaaacccTTTACAATGTAGATCTCTAAAGTTAtgatttttacaaaagtatctttaaaatagtgtcctgaaaaaggggcgtttcttttttttgctgagtttcTCACTTAGAATTCATCTGCAACACTTCTCTTAATAGAAAAGTATAAAACAATTTGTCTACTGACCTGTATGTAGAATGTTGTTCATTATGGCAGTGTTAATTATAAGTAAAGTTAATTGGGGGTTCAATCTGTCAGGATTAGTCTTTTTCAGCATTCATCACTTACCTCTTGAAGGGTTTTTAAGTTCTTGATTCACTGTATTTATTGAACAAAACTGTTATGTGCTGTTTGAATAGTGGATTGGATGTTTTCTTATTCAGTATATTTGCACTGagcaaattaaatgttttaataatgtctTA

Function

symbol description
tsta3 GDP-L-fucose synthase

NR:

description
PREDICTED: GDP-L-fucose synthase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0042351 'de novo' GDP-L-fucose biosynthetic process biological_process
GO:0050577 GDP-L-fucose synthase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function

KEGG:

id description
K02377 TSTA3, fcl; GDP-L-fucose synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810958.1 True 2742 mRNA 0.44 10 7868591 7873986
XM_039810959.1 False 2372 mRNA 0.45 10 7868605 7873986

Neighbor

gene id symbol gene type direction distance location
LOC120565646 LOC103354728,LOC102290039,LOC107394705 coding upstream 863 7862214 ~ 7867728 (+)
LOC120564954 foxc1,LOC104932399,LOC104963658 coding upstream 262961 7603460 ~ 7605630 (+)
foxf2b foxf2,LOC102792585 coding upstream 278292 7586141 ~ 7590299 (+)
foxq1b foxq1,LOC104946962 coding upstream 286754 7580192 ~ 7581837 (+)
LOC120566212 irf4,LOC104941070 coding upstream 444771 7415441 ~ 7423820 (+)
rgs4 NA coding downstream 334467 8208453 ~ 8214500 (+)
LOC120564973 LOC103367494,LOC104965670,LOC104935957 coding downstream 1147531 9021517 ~ 9033680 (+)
LOC120564878 NA coding downstream 1183355 9057341 ~ 9062036 (+)
LOC120566074 LOC104935955,LOC103367504 coding downstream 1193192 9067178 ~ 9070676 (+)
LOC120564889 rgs2,LOC103367537 coding downstream 1206873 9080859 ~ 9083857 (+)
G93986 NA non-coding upstream 253164 7557254 ~ 7615427 (+)
G93985 NA non-coding upstream 343248 7524990 ~ 7525343 (+)
LOC120566054 NA non-coding upstream 473313 7394373 ~ 7395278 (+)
G93933 NA non-coding upstream 540905 7327171 ~ 7327686 (+)
G93932 LOC103399850 non-coding upstream 545165 7322066 ~ 7323426 (+)
LOC120565893 NA non-coding downstream 18238 7892224 ~ 7895718 (+)
G94056 LOC104961454 non-coding downstream 79429 7953415 ~ 7955102 (+)
G94057 NA non-coding downstream 117302 7991288 ~ 7991555 (+)
G94059 NA non-coding downstream 229007 8102993 ~ 8103363 (+)
G94060 NA non-coding downstream 229504 8103490 ~ 8103804 (+)
G93938 NA other upstream 518004 7349810 ~ 7350587 (+)
rhpn1 rhpn1 other upstream 1486993 6354892 ~ 6381598 (+)
G93638 NA other upstream 1654574 6202085 ~ 6214017 (+)
G93613 NA other upstream 1817071 6035369 ~ 6051520 (+)
trmt1l trmt1l other upstream 3155358 4685224 ~ 4713233 (+)
LOC120565294 pycrl other downstream 4933 7878919 ~ 7890177 (+)
LOC120565614 NA other downstream 22159 7896145 ~ 7905247 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other downstream 363384 8237370 ~ 8286436 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other downstream 1273176 9147162 ~ 9168877 (+)
LOC120566011 NA other downstream 1510519 9384505 ~ 9543535 (+)

Expression


Co-expression Network