LOC120565334 (LOC104959369)


Basic Information

Item Value
gene id LOC120565334
gene name LOC104959369
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15990550 ~ 15994166 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811038.1
TTCCTGACAGGCTGCCACAATTACGCAGGGCTGTGATGACGCCAACATCGGCAAATCCTACCTCATCTGCGGAgattgaagaaaaaacaaacataaactcTGTTCCTGTTTGTCTATCGCTCAGAGCATCCCATCACATCCATCCACCCCGTCAGGCTGCTGGCTGTCTCAGTAGGCTACGACCTCTGGTTAATTGCATCTGGATTACTGGAAAGCAGAGGGGATGAGACTACCAGAGAAAAGACCCCTGCTGAATCCTTATCTTCTGTTCCAGGGCGTTAAAACGGAAACGCACTCTCAAATCCACAACAGACCAAAGGGAATATCGCTAACACACACCGGCCTATGGGTGTATTTGGCGATGGAGAGCCCGAACTTGACGCACGGATCTGTTTCCATAAACGACACGCTGGTTCAGAATTCACAAACGACCAGCGTCGAGACAGCAATCGCTCTGCCCATTTTTATGTTTGCTGGAGGCGCCATTGGGAATTTGATTGCAATAATCGTCCTTTCAGTGTCAATACAGGAGAGGAAATCTTCAGCTTTCTACACGCTGGTGTGCGGTCTGGCGGTGACGGACCTGCTGGGCACCTGCCTGGCCAGTCCGCTCACCATAGCCAACTACCTGGACCCCAATGTGCTGACGGACCACCATGTCTGCGAGTTTCActcttttttgttgctgttctTCGGTTTAACAGGACTGAGCATCATATGCGCCATGGCAGCAGAGCGGTACCTGGCTATATGCTGCCCGTACACCTACCAGCGGTGGGGAGTGGACCGACGCTTTGCGCAAAAGTTCCTTTTCTTTATTTGCATCAGTCACATCTTCTTCTGCTGCCTCCCGATGATGGGCATGTCGGTGAGCAAGCTGCAGAAGTCCGGCACCTGGTGCTTCATCGACTGGtggacacaacacaacaacaagccTTTGGCCGCCGCTTACTCCGTCCTGTACGGCGCCGTCAGCCTGCTGCTCATCCTGGGCACCATCGTGCTGAACCTGGCGGTGTGCGGAGCTCTGCTGCTGATGCGCCAGAGGACCGTGCAGCGGACCGTCACCAGATCCAGCGTCCGAGAGAGGTGGAGGGCTCTGTCCTCGGCTGCAGAGACGCAGATGATCGCAGTGCTGGTGACGACCTCCGCGGTGGTTCTGGCCTGTTCAGCCCCGTTGGTGGTCCGTGTGTTTGCCAACCGTTTCATGCTGAAAAATGACCCCAAAGCTGACCTGGCTGCCATCCGAATAGCTTCTGTTAACCCCATCCTCGACCCCTGGATCTACATCCTCCTCAGGAGGTCTCTGTTTCGGCGGTTACTAAATCTATCCAGGCAAGGTAGCAGCACTAGCAGAGGTTCATCTCCTTCAACACAAAGGGATTCGTTTTATCCTGATCTCATGAGGGACAGCCACGTGTTCACCCAGCTGATGTGCAACGCAAACATTATTACTCAGCTGCCTGCCACCGTCAAATTCACTGTGTACAACACAGAGAGCCAGACTTAAAACAGACTGAAGATGTGTTCGACGTCTATGAATGTTTGCTGCTCTCTCAGGCTGCAAGCAGCTCGATGCAGGGACTTTGTCTCGGAGCTGATGTCATTGGCATGAAAAGACTGTGACCTCTCTGTGGGCCCACAGCTGGACAGGACCCTCAGGGCTCCTGTTGGattattaatgaaataaaagtcgACAGCTGCCCTGCATCTATGTAGACGTCTCCTGCATTGACATGGGACAGATGAGGAAAAACTAACTTTTATGTTATTACCGAAGTGTAACAATAAGACATGACCAAGCCTTTATTTTGTGCCTTATTCAGACCTCCTCCCTCAGATACAGCAATGTCCATGGGGACAGTTCATTTTGCATGAGGAGAGACATTTGAAAGACTGATATGAGATTGATGAAGCACTGACTAAATGCTTCTGATTCATGTTTGTATTAAAGATCTTATAGCTTGA

Function

NR:

description
PREDICTED: prostaglandin E2 receptor EP4 subtype-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811038.1 True 1968 mRNA 0.51 2 15990550 15994166

Neighbor

gene id symbol gene type direction distance location
LOC120564897 NA coding upstream 94128 15888576 ~ 15896422 (+)
gamt gamt,LOC102782137 coding upstream 214989 15771293 ~ 15775561 (+)
LOC120564991 NA coding upstream 267344 15720189 ~ 15723206 (+)
LOC120564879 NA coding upstream 468145 15513151 ~ 15522405 (+)
LOC120565844 NA coding upstream 478275 15506857 ~ 15512275 (+)
tmem38a tmem38a coding downstream 28411 16022577 ~ 16031978 (+)
LOC120565290 comp coding downstream 40546 16034712 ~ 16047921 (+)
il12rb1 NA coding downstream 94580 16088746 ~ 16101551 (+)
mast3b mast3 coding downstream 136980 16131146 ~ 16165817 (+)
ndufa7 ndufa7 coding downstream 176297 16170463 ~ 16173569 (+)
G95877 NA non-coding upstream 9052 15980690 ~ 15981498 (+)
G95876 NA non-coding upstream 9924 15979752 ~ 15980626 (+)
G95873 NA non-coding upstream 16200 15973181 ~ 15974350 (+)
G95853 apba3,LOC104946396,LOC105938289,LOC107096970,LOC103395862,LOC107392810,LOC103143878 non-coding upstream 55970 15931028 ~ 15934580 (+)
G95844 NA non-coding upstream 94545 15895677 ~ 15896005 (+)
G95929 NA non-coding downstream 76188 16070354 ~ 16127940 (+)
G95952 NA non-coding downstream 172036 16166202 ~ 16169844 (+)
G96070 NA non-coding downstream 508979 16503145 ~ 16503811 (+)
G96075 NA non-coding downstream 598710 16592876 ~ 16593182 (+)
G96076 NA non-coding downstream 682041 16676207 ~ 16676577 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 357738 15523929 ~ 15632812 (+)
dennd1b NA other upstream 1066705 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 1286197 14689382 ~ 14704353 (+)
G95460 NA other upstream 1369137 14619358 ~ 14621413 (+)
LOC120564965 LOC102299696 other upstream 2590806 13390823 ~ 13399744 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 295657 16289823 ~ 16301000 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other downstream 326328 16320494 ~ 16376449 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 1861465 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 2652537 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 2788434 18782600 ~ 18785636 (+)

Expression


Co-expression Network