edem3 (edem3)


Basic Information

Item Value
gene id edem3
gene name edem3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25587650 ~ 25601207 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811162.1
CGGATGTTGTTGACGTTTTCATCGCAGCGGCATCCGGTATTTCAAGACTGGCTAGCTTGGCGAAACAGAAGCTTACGGCGAAATTATCCACTTTATAACACGAAGGCCAGAAAAGATAGCTCGGTCAGATCCACTTCTCAACAATGGACGCGGTTTTTGTGGATTTTTCTTATATTATTTGTTTGTCCGTTGTCGCCAGCTCGGCCAGTTAGCTCAGCTGGCTAACTGGCTAATTAAACCCCGACAAGTGCTCGGCTGCTTGTTTGACTGGTTTACGAAAGAGAACTGTCAAGAGGAGGAACTTATTAAATTATATCTTTAAAAGTTTACAGTTTCACAACGTCACACACCAGAGTGATAACAGGAGCTGGTATGAACAGGAGTTTCCTAAGGCTGTTGGTTAGACTTCTGGTTTAATAATTGGCTGTAGATAGTGTGTGGAGTCATAGATATAGCTAGCTATATCTATGGTGTGGAGTAGCTAAGTAAATTACATGATTTGTGGAGTGGGATTATTAACACAGAACAAGGCCGACTGCGTTGGTTTACAGTGAGTCTCAAATATGACAATGTGTCGTGATAACTAAAATGACTATACGTTTCCTTGATCGCTGTTACATGAAGACTAGCTACATCTAGACAATACAATTATTGTAACTTAGAGTTACTTGTATTTAGAGCGCAGGATTAATTTGATTTAGCGTGTTTGCTTTGGGGCAGAGTTAAATGTAACGTGTTACGTGCCAACGTGTCACACGTGTACAATAGGTCCAGGTGACAGTTTGGGAAAATAAACAGGTGTGACTCACAACCTGCTCACGGGACGTGGAGTAGCTTTGCACTACAACTACTACCTGGTACATCTCTGTCAATTTACATCTCGATCTCTGGTTACTTGAAATAACAACATTGCTAACTATTTAAAAGCATTTTGGGCTGTAAGTGCACATATGAAAGCGCACAGTGTACATAGTAACTCCTTGACTTATAGTCGTGTTTTGGATGTTTGCTGAGCAACACAGATGGAGTGTAGGTGGCCAAGATTTAGCAACAAGCTAACATGATTTCATGATGTTTTCTGTACCTATTGATGATTAAGTGGTACATCTTAGGCAAAGCCAAAACGTGCTTTATCATGATCTCAGAGGTAAAACATTAATGGGTTGGTGTAGGTTTATGTTTCTGTTGGTTTGAGCTGTTTGGTTAGGGCGGTGGTAATGACTCGGTATTTGCTCTGTGACTGACCGAGAGCCAAACTGTGGTTTTATGTATATTGCTGCGATCTTACCCACCTACCACAATGCCAGCTGTACTGTTCTCATTGATGCTACTCGGAGCATTATGCAGCCTCGGACACGCCATGTCACGGGAGGAGAAGCTCAGGTTGAGGAACCAAGTGGTTGAGATGTTTGACCATGCATATCAGAATTATATGgACCATGCATACCCAGCCGATGAGCTGATGCCACTAACATGCAGAGGAAGAGTACGTGGACTTGAACCCAGTCGAGGTGACGTAGACGACGCTCTGGGAAAGTTCTCTCTGACCCTCATAGACACTCTGGATACTCTGGTGCTTTTGAACAAGACGACAGAGTTTGAGGCGGCAGTGAGAAGGGTGCTGTCAGATGTGAGGCTGGACAACGACATTGTGGTGTCGGTCTTTGAAACCAACATTCGAGTCCTTGGCGGTCTGTTGGGAGGGCACTCCATGGCTGTGATGCTGAAGGAGGGAGGTCAACACATGCAGTGGTACCAGGATGAGCTCCTACATATGGCCAAAGACCTGGGTCTCCGACTGCTGCCAGCCTTCAACACCAGTAGTGGCCTGCCCTATCCCAGGGTGAACTTGAAGTTCGGTGTCAGGGGTCCTGAGACAAGAACGGGCACAGAAACAGACACCTGCACTGCGTGTGCAGGAACCATCATCCTGGAGTTTGCTGCCTTGAGTCGCTTCACTGGGGATCCTGTGTTTGAGgctcatgCCCGGAGAGCTCTGGACTTTCTGtgggagaagagacagagaaacagcaaTCTGGTGGGAACCACCATCAACATCCACTCCGGAGAGTGGGTCCGCAGggACAGCGGTGTAGGAGCGGGAATTGACTCGTACTATGAATACCTGCTAAAGGCTTACATCCTCTTGGGAGATGACCTGTTTCTGGAGCGGTTTAATATTCACTATGCATCTATAATGAAGTACATTAGCCAGCCTCCACTTCTGCTGGATGTCCACATCCACAAACCTCTGCTTCCCGCTCGCACCTGGATGGACTCTCTGCTGGCCTTCTTCCCTGGACTACAGGTGTTGAAGGGAGATATCCGTCCTGCCATCGAGACTCATGAGATGTTGTATCAAGTTACAAAGAAACACAACTTCCTCCCAGAGGCCTTCACTACTGATTTCAGGGTACACTGGGCCCAGCATCCCCTGAGGCCTGAGTTTGCAGAGAGCACCTATTTCCTTTACAAGGCCACAGGAGACCCGTATTACCTGGAGGCAGGTCGCACCATCCTGGACAACCTCAACCGCTTTGCTCGTGTTCCCTGCGGCTTCGCTGCAATGAAGGACGTACGCACTGGCAGCCACGAGGACAGAATGGACTCCTTCTTCCTTGCTGAGATGTTCAAATACTTGTTCCTGCTGTTTGCTGAAGCGGAGGACTTACCATTTGACGTGGAGGACTACATCTTCACAACCGAGGCCCACCTGCTGCCCCTGTCCCTCTCCACAGCCCCTCACTCTTCTTCTATTCCCTCAAACAGAACGTCAGAGCAGGAGCTGGACGACTCTAACTTCGATTGGACCTGCCCTAACACTCGCCTCCTGTTTCCTGACCCTGCCTACCCTGGTAACTTGAGAGACCCAATCCGTAGTGCTGTGGACAAGAGCTGCCCCCGCCCTGCTCCTTACAGGGAGCCCGGTATGGGCCGTCCTCCCCTGAGGGCTCAGGACTTCATGGCAAACAACCCTGAACATCTGGAGCTGCTGAGGAGAATGGGAGTCAGTCTGATCCACCTGAAAGATGGCAGGGTGCAGCTGGTCCAGCATGCTACACAGGCGGTGAGTGCGGTAGCAGCAGAGGACGGCGTGCGTTTCATGCAGGAGATGATGGAGCTGTCCAGCCAGCAGCAGAAAGAGCAGCTGCCTCCCAGAGCCATTCAGATCGTCTCACATCCATTCTTTGGCAGAGTTGTGCTGACCGCCGGCCCAGCACAGTTTGGCACAGACCTGTCCAAAAGTTCTACAGGGTTACGAGGCTTTGTGACTGTGGCTGAACCCTACAGCGGCTGTACGGAGATTACCAATGCGGAGTACGTCCGGGGCCACATCGCTCTGCTTCAGAGGGGTCAGTGCATGTTTGCAGAGAAGGCCCGACACATCCAGAAGGCTGGCGCCATCGGAGGCATAGTCATCGATGACAACGAGGGCAGCAGCAGCGACACGGCTCCCCTGTTTCAGATGGCCGGGGACGGCCGCAGCACAGATGACATCACCatgcctctcctcttcctcttccacaAGGAGGGCAACATCCTGTTGGAGGCGCTGAAGGAGTACAGAGAGGTGGAGGTGCTGCTGAGCGACAAAGCCAGAGACAGAGAAACCATATTCAAAGGTAAACCTCTTCCTGGCATCCTGATTGAGGGCAGTATGGACGTGCAAGAAGCGAAGGAAGACTGCTTAACTGAGGCAACAACTCCCACCTCATTTGAACCCATAAGCCAATTGCAAGAGAGCACGTTGGAGCTAGACGAATTGGCTCCTGAGGAGGTTACTCCATCACAGGGGGAAGTCAGTCCTGTAGGTCAGGACACTAGTCCTGTAGAGGAAGTTCGACCACCGGAAGAGGAAGCCAGTCCTGCAGAGGCAGAGGCGGATTTGGCAGAGCCCAAAGAGGAGAAAGACtctgagaagagagaggagccTGAAGGCGACACAGACTCAAGCAGCCAGTCAGTGGATGAACTGATGGCTGATTGGCGAGAAGACTTGGAGGCGTTCCAGCAGATGGAGAAGGATGAGCTCTGACAGTCGTCGGGCGTGCCGTGCCCTGTGACTGCGGTTTGATCCCACTGTGGGGGAGAAACCTGGAGGGAATATGTCTTCACAAGTCACCAGTCTCCATCTGGTGAACTCAGAGGATGCTGGGGCAATGTCTTTCATGACTGTTtgttctcttgctctctgttaATGGTGTCATGTGCCAAGGCAGCCTGCATACTGTATCTCTGGACCATAAGGGAGTCCTTTTTAGCCTGAAAGTTTGTTTATGGATAAGAGACCAGGGTTCTTACCTCACTTTCTCATACAGTTTCTGTGTATCTGTCATAACAAAGCCCTAATGAATGACACAGTCCAGACTGTATGTAACAGCGTCTCACTTTCCATTCCAAATTCCTTCTCACACTGTCGTTCTCTCTCTATGCATTTCTGACTCCTTTTTGCTCAAATTAATGCTGGTCCAACAACTACTAATTAATCCATCGaccaattaattttattttcaatgtgaTGATTATTTGTGATAATACAATTACTATCTTCGGGATCCTGGGCCTAATCTTATGTACACATCTATGTGAGTTAAGGACTTAATTCATGTGGGGATCGGTGACATCGAATAAGCTGCAGGATCTTTTTTTAAGGCTTTACGGTAGACATACTCAACACCAAACTTGATCTCTCTCTGGAGGATATATGAAGTCATCTGTCAatgtaaatatgtatttgtCAAGATATATTGACTGAAACAATGTAGCGCTGCTttgctcaggttctggttcaccCAAAAAAACAGCCTCTGGACCACATTGGGTGGAGCGGACAGACCCACACGCCGCCACGGGAGGGCGCTATGAGATCTGTCTGTCATGCTTTAACTGTTGACTGATTGGAAGGAGCAGAAATAAGCCACTAAATTAACctgatgaaatgaaataaaaaattaagaGGGAAAA

Function

symbol description
edem3 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process and mannose trimming involved in glycoprotein ERAD pathway. Predicted to be located in membrane. Orthologous to human EDEM3 (ER degradation enhancing alpha-mannosidase like protein 3).

NR:

description
PREDICTED: ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X1

GO: NA

KEGG:

id description
K10086 EDEM3; ER degradation enhancer, mannosidase alpha-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811162.1 True 4965 mRNA 0.49 21 25587650 25601207

Neighbor

gene id symbol gene type direction distance location
zgc:92140 LOC103354221,LOC104918428,LOC106931148,LOC103463620,LOC103142534 coding downstream 981 25558109 ~ 25586669 (-)
colgalt2 LOC104918429,LOC100697625,LOC101469839,LOC102788431 coding downstream 40622 25522906 ~ 25547028 (-)
rgl1 rgl1,LOC102787953 coding downstream 72032 25489012 ~ 25515618 (-)
sema6bb sema6b coding downstream 206159 25301086 ~ 25381491 (-)
rorca LOC104943044,LOC103358794 coding downstream 317222 25253452 ~ 25270428 (-)
crlf1b LOC104948968,LOC103376638,LOC103354212 coding upstream 154451 25755658 ~ 25768798 (-)
peak3 NA coding upstream 439605 26040812 ~ 26044235 (-)
LOC120565813 NA coding upstream 545034 26146241 ~ 26156917 (-)
onecut3a LOC104920849,LOC103354199,LOC105938949,LOC106515027,LOC107393292,LOC107089723,LOC103463645 coding upstream 592951 26194158 ~ 26215407 (-)
foxq2 LOC104953155,LOC102303059 coding upstream 636087 26237294 ~ 26239508 (-)
G98239 NA non-coding downstream 75398 25511810 ~ 25512252 (-)
G98227 NA non-coding downstream 137836 25446552 ~ 25449814 (-)
G98216 NA non-coding downstream 197262 25296023 ~ 25390388 (-)
G98156 NA non-coding downstream 369901 25217173 ~ 25217749 (-)
LOC120565289 NA non-coding downstream 393618 25188973 ~ 25194032 (-)
G98261 NA non-coding upstream 69823 25671030 ~ 25671290 (-)
G98291 NA non-coding upstream 135348 25736555 ~ 25736951 (-)
G98292 NA non-coding upstream 136711 25737918 ~ 25738157 (-)
G98293 NA non-coding upstream 137292 25738499 ~ 25740650 (-)
G98301 NA non-coding upstream 156012 25757219 ~ 25784438 (-)
zfyve9b NA other downstream 702409 24865781 ~ 24885241 (-)
G98005 LOC103373964,LOC107081966 other downstream 831683 24749001 ~ 24755967 (-)
shc2 shc2,LOC101463941,LOC100696779 other downstream 1385112 24182931 ~ 24202538 (-)
tax1bp3 tax1bp3 other downstream 2227763 23353234 ~ 23359887 (-)
elavl4 elavl4,LOC103367586,LOC107657884 other downstream 2638207 22865827 ~ 22949443 (-)
fam78bb fam78b,LOC107393274,LOC105927868,LOC107089706 other upstream 139512 25740719 ~ 25747031 (-)
LOC120565253 NA other upstream 429386 26030593 ~ 26033391 (-)
G98429 NA other upstream 694740 26295947 ~ 26298495 (-)
unc13a unc13a other upstream 778803 26380010 ~ 26426941 (-)
G98612 atp5d other upstream 1489027 27090234 ~ 27091598 (-)

Expression


Co-expression Network