ccdc50a (ccdc50)


Basic Information

Item Value
gene id ccdc50a
gene name ccdc50
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21036277 ~ 21060839 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811188.1
AGCTAGTTGGTTGAATGAAGGTTCAGGGAGGGACGGACGGACGCTCGTAGACAACCTGGCACGGTAGCTCTTCAGCAGAGTAGCTGCTAGGCAATTTCAGCAGCGACGAACCGAGAGAGGGTGGCCTCCGAAATTAATCAAAAGGGCCGTCCAGCACCTGAACCATCAATCGGGTTTATGAGTAAAGGCGATCGATCAACCTGCGGTTAACCTTCGGTGAAAGGCGGGAGTGTAATTCAACGTCAGCGGTTTCTTTTGACTTATTATCGGTGACAACATGGCTGAATGTAACGTTAGCATCGACAAGAATAAACTACCTGGAGTGAAAGAGGtgtGCCGGGACTTTGCTGTGCTGGAGGACCACTGCCTGGCCTACAACCTCCAGGAGCAAGAGTTTGAGAGCCACTTGGCATCTAACGTCAACAAGAGCCGTCTGGTGCAGAAGGATCTGCAGGTGGCCAAGaagctgcaggaggaggaggatcagAGGGCCAAGGGCCAGGCCCAGAAACAGCATGTTGACATTGAGCGTCAAGACAATGAGATCGCATATGAGATTCAGGAACAACTGGTCCGACAGGCAGAACTACAGCGACGTCAGGAAGAGAAGGATGCGGCTATAGCTCGTAAGCTGCAGGAGAAGGAGAtgaaagaggaaaggaggagacaGAAGCAGCTGGAAGCAAACTTTGAGGAGGAGTACTTTGAGGATCACGGAGCTGCAAGAATACCCCTTGACTTGGACAAACACACCCGTCACCAAACCAATTCCCCAAGCCCCCGTGATGCACATGCTCCAGTGATCTCACATCGTGATTACTCCCCAGATTATAGCTCACTGGAGCCCAAAAGGAGCAGGTACCCAAGGCAGGACCCAGCAGCACCCCACAGCCACTTCAGATACCCTGAGCACTGCTTAGAGACAGAAGGGGGGCGAAGCAGGCATGCAGATCCATACCCAGAGCACCTGCTGGCTTCTAGAGGCAGGCATGGGGACAGGTACCCAGATTATGAGCCCacagagactggaagagccagGGGCCCAGGGTGGGGGGACACAGAGAGAGTGTTGAGAAGCAAAGAGAGACCAGCCAGACCACCTCTACCACAGAGCCTCATAGAGAGAGACAAGACCTGGGACAGAAAAAGGGACAGGCAGCATGACCTAGACAGGGGCAGAGACCTGGAATTGGAGAGGCATATGGgaaaagagcagaggagagacagggagCAGGACCTCAGAGGGGCGAGAGCAGGAGGAAAAGACAGGGAAAGATCCAGAGAAAGAGGATTGAGtggggacagacagagagagagagacaggcagatacAGAAAGACAAAGATAGACAACGAGTAAGAACCAGGACCATGGAGAGGGGACTTGAAGAGGAGCCAGGGCGGAGCAGGGACTGGCCGAGGGAGGGCATGGCTTCTTGGGAGGAGCAAGGGGATGATGGTGAGAGGGAGCGGAGGGCCGGGGGCCGGCAGCGTGTCCAGTCCGGCCCCGAAGAGGTGTTTGATGATCCGGAAGAGCAGGGCGGGGTTCCTGGCAGGGAACGCAGTCATTCTCACATCAACGGAGAGACAGGTCGTATTGTGCACCGAGGGAGTggagcagtagtagtagcagaaACGGAGTATGGCGTGAGCGAGGCCACCAAGGGGTTGGCAAAGCTCGATATCCGTGAGCAGGAGCTCAAGGACATGGAGGTGGCCAGGAAACTGCAAGAGGAGGAAGTCAAGGTGAAGAAGGAAACCAGACAAGCCAGCAAGATGCATGTGCGTGCAGCCCAAGTGGCGCAGGATGAGGAAATCGCCCGACTGCTGATGGAACAAGAGAAGAAGGAGTACAGGAAGAATCGAGAgcgggagaaggagagagagcggGAGAAGGAGAAGGGAGAGAGGTTGGCCATGGACAGGATGGCAATGGAAAGAAGGCGGCTAGAGGGAGACCACAGGCCAAACTTGGAGGAAGTAGTCCGGCCCAGAACACGAGATGAGTATGAGAGGCAGAGGAACCATAACAAGCCTGCCAGgcCTCCTCAGCCTCATGCACACGACTATGAGAATGTGAACTCTGGCTATGGCTACTCGGACCACCCAGCTCCCCCTCGCCCTCCCACCAGACCTGAGGCTGCTTACAAAGGTGCCTATTACAAGCGGTGACTCAGGCTCTCTACCATGTCCAGACATGCTGTCagtcctccttttttttcttctttttatttatcttttagtTTTCAATCATTTGCACTCTGTTGACCAGAAGCCTTGGGACAATCTAATGAGTTGGCAGTggaatttcttttttatacCCTCCAAAGTTTAAAGAAGTGGGTCTGTGAGTGCTGGAACCACACtcatcttttcttctttttttttattttacttttttaaattgtgatttaatattatttctttcAACTCAACATCAAGACAAGCCAAAATAGCAGCCTTGTAATATAAACATAAACTCCCCTTGATTCTTAGCTGTTGAAATAGAGGAACCGGCTCCTCACCTTCTGTGGTCATCATGTGCCGATGTTCGTCCCATCTGTGGACCATGCCATCACAAGGGCTCAAGGCCTCTGCTGGATATAACCATGCAATCTCAAAATTCCTCATGACTCTTCATAGGATGGGCCTGTCTGGTCCAACATGGCTGCTACAGTGTCTTTGATACCaacatggcagctgctttttACACCCATGCTGCATTTCTGTTCTCTTGTCATGCTGTGCAACGAGGCTACACAGGTCCTATCCATGTGCCACACAGCGTACGCCTCTGGGGGGGGATactgttttattgctgtattcAAACAACAAAAGAATAAGCCTTTATCAAGATGCTGGTACTTTTGGCTTTGACATGTTTTACCACCTTGTTCCAGTGCAGAGGAGGTGGAGCTTTGTGATGATCCATGGACATTTAATTGGCTGTAGACTGTCATCTTCTGCTTGTGAGGGGCACTTTTTAACCCCATCACCCTTTAAAAGTGTAGATGGATGATGATATGTGTATGACTCACTGTTTCTATGTGCATGCTTACTGAAAGTGTACAACTGTGTACATGCATTTCAGCTCTATATCAATTTATATGGCTCCCTCTTTATTCTCAGAAAGGGCTAAAGCCACAAAAAGCCAATAATCTGTCTTTGTGAATTAACAGTATATGTTGGCTCATATACTGCTGTACAATATCACTTTTCTGCCACCATTTCATATCAGCTAATCATTTACAAACCAAAACTGGCCCATAAAAGAACCAGTACCAAAATGAAATGCATGTACATTGCTTGTCCGTGTCAAAACCTGAATTTGTGCGTGCTTACGGCACAAATGTGCAATTGAatatttgcttgttttatttaaatgtaaatatccattttcttcttcttttacttGTGCTACCAAATTCTGTTTCCCATTGTGGAAAATACAAGATCCTGTCTTCAGTCCCTTTTATCTGGTGTCCCACTAGTTATGTTTGTTCAGAAAGGGAaccttatattttatttttatacaatATTTTGTTAGTCTTTCCTCAAGATTGTTCCCTTTATTTTCATTGCCCCAAGCTTCCAATCCTCTTCTTTGTCTCAAGCTCAAAGGCAGACATCACTTACTGcctacagaaaagaaaaaaacattcccacaaTAAAACTGCATCTGCATAGAGGGAACTCAATCCCAAGATcagctaaaatatatattactgCTCAAAGGGACCTATTTTAGAGCGTAGTACTCCAGGATCCATTATTTTCTGTTCATATTGAATAATAAGGATAAGGAAAATGAAGAGCACGTTCAAGCTTTTGAGTTTACTGAAATGTTTGTGACGGCCACAAGCTGTTCAAAAGTCTTTGAACATTTAGTGCTGCTTCAAGGTTCTCGCGTTGTAATAAATGTTGCTGAAATTATAAATCAGCTTCCAAAATGATTCCCTCCCTGTTCAGAGAAAGTGTGAGATGTTTGTATTGCCAATGACAAACATGCAAGTGTTATTAAATTATGTGCTAATTGCTGTTGACAGAATGAGATTTGTGCCATacgtttgtcattttttcagggACTTGAAAATGGGAAAAACTTAAAGTTGTTGTGGTTGTAGCAGTTACCACACCCGCCAAGGTGGGACTCCTTATTTATTCTTTGGCGAGAGCACCGCCGTGTGGACATGTTGACAATGGCAAAACGATGTACAAAATTGATCTGATCAGGATGTACATTTGTGGATGTTGTGCATCAGACATGGAATCGAATGCTGTCCACAGCTAACATTGAGtgctacatttttttctttaatccaGGGCTTGTATGCAATCTACCAATCATGAATCGGCACATATGTTGGCACTTGCTGTAAcagaactttttttattttaagtaaaaCCAATTAACAAGTTGCTTTTACTCATAGCATCtcaaaaatataataaactATCAGCATTTCCACTGTT
>XM_039811189.1
AGCTAGTTGGTTGAATGAAGGTTCAGGGAGGGACGGACGGACGCTCGTAGACAACCTGGCACGGTAGCTCTTCAGCAGAGTAGCTGCTAGGCAATTTCAGCAGCGACGAACCGAGAGAGGGTGGCCTCCGAAATTAATCAAAAGGGCCGTCCAGCACCTGAACCATCAATCGGGTTTATGAGTAAAGGCGATCGATCAACCTGCGGTTAACCTTCGGTGAAAGGCGGGAGTGTAATTCAACGTCAGCGGTTTCTTTTGACTTATTATCGGTGACAACATGGCTGAATGTAACGTTAGCATCGACAAGAATAAACTACCTGGAGTGAAAGAGGtgtGCCGGGACTTTGCTGTGCTGGAGGACCACTGCCTGGCCTACAACCTCCAGGAGCAAGAGTTTGAGAGCCACTTGGCATCTAACGTCAACAAGAGCCGTCTGGTGCAGAAGGATCTGCAGGTGGCCAAGaagctgcaggaggaggaggatcagAGGGCCAAGGGCCAGGCCCAGAAACAGCATGTTGACATTGAGCGTCAAGACAATGAGATCGCATATGAGATTCAGGAACAACTGGTCCGACAGGCAGAACTACAGCGACGTCAGGAAGAGAAGGATGCGGCTATAGCTCGTAAGCTGCAGGAGAAGGAGAtgaaagaggaaaggaggagacaGAAGCAGCTGGAAGCAAACTTTGAGGAGGAGTACTTTGAGGATCACGGAGCTGCAAGAATACCCCTTGACTTGGACAAACACACCCGTCACCAAACCAATTCCCCAAGCCCCCGTGATGCACATGCTCCAGTGATCTCACATCGTGATTACTCCCCAGATTATAGCTCACTGGAGCCCAAAAGGAGCAGGTACCCAAGGCAGGACCCAGCAGCACCCCACAGCCACTTCAGATACCCTGAGCACTGCTTAGAGACAGAAGGGGGGCGAAGCAGGCATGCAGATCCATACCCAGAGCACCTGCTGGCTTCTAGAGGCAGGCATGGGGACAGGTACCCAGATTATGAGCCCacagagactggaagagccagGGGCCCAGGGTGGGGGGACACAGAGAGAGTGTTGAGAAGCAAAGAGAGACCAGCCAGACCACCTCTACCACAGAGCCTCATAGAGAGAGACAAGACCTGGGACAGAAAAAGGGACAGGCAGCATGACCTAGACAGGGGCAGAGACCTGGAATTGGAGAGGCATATGGgaaaagagcagaggagagacagggagCAGGACCTCAGAGGGGCGAGAGCAGGAGGAAAAGACAGGGAAAGATCCAGAGAAAGAGGATTGAGtggggacagacagagagagagagacaggcagatacAGAAAGACAAAGATAGACAACGAGTAAGAACCAGGACCATGGAGAGGGGACTTGAAGAGGAGCCAGGGCGGAGCAGGGACTGGCCGAGGGAGGGCATGGCTTCTTGGGAGGAGCAAGGGGATGATGGTGAGAGGGAGCGGAGGGCCGGGGGCCGGCAGCGTGTCCAGTCCGGCCCCGAAGAGGTGTTTGATGATCCGGAAGAGCAGGGCGGGGTTCCTGGCAGGGAACGCAGTCATTCTCACATCAACGGAGAGACAGGTCGTATTGTGCACCGAGGGAGTggagcagtagtagtagcagaaACGGAGTATGGCGTGAGCGAGGCCACCAAGGGGTTGGCAAAGCTCGATATCCGTGAGCAGGAGCTCAAGGACATGGAGGTGGCCAGGAAACTGCAAGAGGAGGAAGTCAAGGCCAGCAAGATGCATGTGCGTGCAGCCCAAGTGGCGCAGGATGAGGAAATCGCCCGACTGCTGATGGAACAAGAGAAGAAGGAGTACAGGAAGAATCGAGAgcgggagaaggagagagagcggGAGAAGGAGAAGGGAGAGAGGTTGGCCATGGACAGGATGGCAATGGAAAGAAGGCGGCTAGAGGGAGACCACAGGCCAAACTTGGAGGAAGTAGTCCGGCCCAGAACACGAGATGAGTATGAGAGGCAGAGGAACCATAACAAGCCTGCCAGgcCTCCTCAGCCTCATGCACACGACTATGAGAATGTGAACTCTGGCTATGGCTACTCGGACCACCCAGCTCCCCCTCGCCCTCCCACCAGACCTGAGGCTGCTTACAAAGGTGCCTATTACAAGCGGTGACTCAGGCTCTCTACCATGTCCAGACATGCTGTCagtcctccttttttttcttctttttatttatcttttagtTTTCAATCATTTGCACTCTGTTGACCAGAAGCCTTGGGACAATCTAATGAGTTGGCAGTggaatttcttttttatacCCTCCAAAGTTTAAAGAAGTGGGTCTGTGAGTGCTGGAACCACACtcatcttttcttctttttttttattttacttttttaaattgtgatttaatattatttctttcAACTCAACATCAAGACAAGCCAAAATAGCAGCCTTGTAATATAAACATAAACTCCCCTTGATTCTTAGCTGTTGAAATAGAGGAACCGGCTCCTCACCTTCTGTGGTCATCATGTGCCGATGTTCGTCCCATCTGTGGACCATGCCATCACAAGGGCTCAAGGCCTCTGCTGGATATAACCATGCAATCTCAAAATTCCTCATGACTCTTCATAGGATGGGCCTGTCTGGTCCAACATGGCTGCTACAGTGTCTTTGATACCaacatggcagctgctttttACACCCATGCTGCATTTCTGTTCTCTTGTCATGCTGTGCAACGAGGCTACACAGGTCCTATCCATGTGCCACACAGCGTACGCCTCTGGGGGGGGATactgttttattgctgtattcAAACAACAAAAGAATAAGCCTTTATCAAGATGCTGGTACTTTTGGCTTTGACATGTTTTACCACCTTGTTCCAGTGCAGAGGAGGTGGAGCTTTGTGATGATCCATGGACATTTAATTGGCTGTAGACTGTCATCTTCTGCTTGTGAGGGGCACTTTTTAACCCCATCACCCTTTAAAAGTGTAGATGGATGATGATATGTGTATGACTCACTGTTTCTATGTGCATGCTTACTGAAAGTGTACAACTGTGTACATGCATTTCAGCTCTATATCAATTTATATGGCTCCCTCTTTATTCTCAGAAAGGGCTAAAGCCACAAAAAGCCAATAATCTGTCTTTGTGAATTAACAGTATATGTTGGCTCATATACTGCTGTACAATATCACTTTTCTGCCACCATTTCATATCAGCTAATCATTTACAAACCAAAACTGGCCCATAAAAGAACCAGTACCAAAATGAAATGCATGTACATTGCTTGTCCGTGTCAAAACCTGAATTTGTGCGTGCTTACGGCACAAATGTGCAATTGAatatttgcttgttttatttaaatgtaaatatccattttcttcttcttttacttGTGCTACCAAATTCTGTTTCCCATTGTGGAAAATACAAGATCCTGTCTTCAGTCCCTTTTATCTGGTGTCCCACTAGTTATGTTTGTTCAGAAAGGGAaccttatattttatttttatacaatATTTTGTTAGTCTTTCCTCAAGATTGTTCCCTTTATTTTCATTGCCCCAAGCTTCCAATCCTCTTCTTTGTCTCAAGCTCAAAGGCAGACATCACTTACTGcctacagaaaagaaaaaaacattcccacaaTAAAACTGCATCTGCATAGAGGGAACTCAATCCCAAGATcagctaaaatatatattactgCTCAAAGGGACCTATTTTAGAGCGTAGTACTCCAGGATCCATTATTTTCTGTTCATATTGAATAATAAGGATAAGGAAAATGAAGAGCACGTTCAAGCTTTTGAGTTTACTGAAATGTTTGTGACGGCCACAAGCTGTTCAAAAGTCTTTGAACATTTAGTGCTGCTTCAAGGTTCTCGCGTTGTAATAAATGTTGCTGAAATTATAAATCAGCTTCCAAAATGATTCCCTCCCTGTTCAGAGAAAGTGTGAGATGTTTGTATTGCCAATGACAAACATGCAAGTGTTATTAAATTATGTGCTAATTGCTGTTGACAGAATGAGATTTGTGCCATacgtttgtcattttttcagggACTTGAAAATGGGAAAAACTTAAAGTTGTTGTGGTTGTAGCAGTTACCACACCCGCCAAGGTGGGACTCCTTATTTATTCTTTGGCGAGAGCACCGCCGTGTGGACATGTTGACAATGGCAAAACGATGTACAAAATTGATCTGATCAGGATGTACATTTGTGGATGTTGTGCATCAGACATGGAATCGAATGCTGTCCACAGCTAACATTGAGtgctacatttttttctttaatccaGGGCTTGTATGCAATCTACCAATCATGAATCGGCACATATGTTGGCACTTGCTGTAAcagaactttttttattttaagtaaaaCCAATTAACAAGTTGCTTTTACTCATAGCATCtcaaaaatataataaactATCAGCATTTCCACTGTT

Function

symbol description
ccdc50 Enables ubiquitin protein ligase binding activity. Acts upstream of or within sensory perception of sound. Located in cytosol. Implicated in autosomal dominant nonsyndromic deafness 44 and mantle cell lymphoma.

NR:

description
PREDICTED: coiled-coil domain-containing protein 50 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811188.1 True 4471 mRNA 0.47 12 21036277 21060839
XM_039811189.1 False 4450 mRNA 0.47 12 21036277 21060839

Neighbor

gene id symbol gene type direction distance location
usp13 NA coding upstream 168289 20825520 ~ 20867988 (+)
ndufb5 ndufb5 coding upstream 211702 20820248 ~ 20824575 (+)
actl6a actl6a coding upstream 219391 20810183 ~ 20816886 (+)
mfn1b mfn1 coding upstream 261464 20756787 ~ 20774813 (+)
LOC120565171 LOC104931934 coding upstream 365126 20669336 ~ 20671151 (+)
LOC120564993 LOC104965956 coding downstream 12279 21073118 ~ 21075438 (+)
p3h2 p3h2 coding downstream 18795 21079634 ~ 21146410 (+)
cpox cpox,LOC102782768 coding downstream 91739 21152578 ~ 21157082 (+)
tmem47 tmem47,LOC102234870,LOC103464126 coding downstream 121964 21182803 ~ 21189074 (+)
nexn nexn coding downstream 142093 21202932 ~ 21215185 (+)
G96871 NA non-coding upstream 26967 21005731 ~ 21009310 (+)
G96782 NA non-coding upstream 255359 20776558 ~ 20780918 (+)
G96777 NA non-coding upstream 286381 20749212 ~ 20749896 (+)
G96775 NA non-coding upstream 292502 20743067 ~ 20743775 (+)
G96758 NA non-coding upstream 334339 20701439 ~ 20701938 (+)
G96898 NA non-coding downstream 833 21061672 ~ 21062304 (+)
G96906 LOC103364786,LOC104920247 non-coding downstream 66224 21127063 ~ 21174307 (+)
G96963 LOC102235645,LOC103464121,LOC107392658,LOC103138531,LOC103371596,LOC106936986,LOC107100776,LOC101155672 non-coding downstream 250073 21310912 ~ 21314520 (+)
G97009 NA non-coding downstream 307279 21368118 ~ 21456800 (+)
G97011 dmap1 non-coding downstream 312102 21372941 ~ 21373533 (+)
prkacba prkacb other upstream 471453 20548999 ~ 20564824 (+)
G96513 NA other upstream 1504600 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 2250641 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 2371164 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 3176866 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 350497 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 494055 21554894 ~ 21557731 (+)
G97093 NA other downstream 630058 21690897 ~ 21782000 (+)
G97321 NA other downstream 1222807 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1424672 22485511 ~ 22491235 (+)

Expression


Co-expression Network