LOC120565392 (LOC103395674,LOC105891059,LOC101167724,LOC101068541,LOC105888650,LOC105896821,LOC106527799)


Basic Information

Item Value
gene id LOC120565392
gene name LOC103395674,LOC105891059,LOC101167724,LOC101068541,LOC105888650,LOC105896821,LOC106527799
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4344659 ~ 4345129 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811201.1
TTTCTTTAGCTGTGAacacagagaagacagagacGCTAAAATGGCCAGAACCAAGCAGACCGCCCGTAAATCCACCGGAGGAAAAGCTCCCAGGAAGCAGCTGGCCACCAAGGCTGCCCGTAAGAGCGCCCCGGCCACCGGCGGAGTGAAGAAGCCTCACCGTTACAGGCCCGGTACCGTGGCTCTGAGAGAGATCCGTCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGAGGGAGATCGCTCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCTCCGCCGTCATGGCTCTGCAGGAGGCCAGCGAGGCTTACCTGGTCGGCCTCTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGAGGGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGCATCCGCGGAGAGAGGGCTTAAACTCACCCAGCACCAAACCA

Function

NR:

description
PREDICTED: histone H3-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007596 blood coagulation biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811201.1 True 471 mRNA 0.61 1 4344659 4345129

Neighbor

gene id symbol gene type direction distance location
LOC120565402 LOC106958509,LOC103391927,LOC106963510,LOC107690788 coding upstream 183217 4160909 ~ 4161442 (+)
LOC120565404 si:ch73-368j24.3,LOC108247233,LOC102383489,LOC105916187,LOC107569590 coding upstream 193656 4146493 ~ 4151003 (+)
LOC120565396 LOC108262407,LOC104935308,LOC104932967 coding upstream 202553 4141578 ~ 4142106 (+)
LOC120565394 LOC104935534,LOC103395676,LOC104932847,LOC103395770 coding upstream 212086 4131863 ~ 4132573 (+)
LOC120565880 LOC104960898 coding upstream 489849 3826863 ~ 3854810 (+)
LOC120565398 LOC108262407,LOC104935308,LOC104932967 coding downstream 20993 4366122 ~ 4366561 (+)
LOC120564977 zgc:110434,LOC102204254,LOC103462478,LOC107386469,LOC101485372,LOC103381127,LOC103379246,LOC103395676 coding downstream 28697 4373826 ~ 4374754 (+)
prpf38a prpf38a,LOC107731643,LOC107684051 coding downstream 63514 4408643 ~ 4419781 (+)
LOC120565669 NA coding downstream 94211 4439340 ~ 4443524 (+)
LOC120565674 NA coding downstream 169923 4515052 ~ 4519593 (+)
LOC120565406 NA non-coding upstream 4061 4332961 ~ 4340598 (+)
G93170 NA non-coding upstream 44901 4281451 ~ 4299758 (+)
G93169 NA non-coding upstream 61364 4282869 ~ 4283295 (+)
LOC120565405 NA non-coding upstream 79294 4235808 ~ 4265365 (+)
G93151 NA non-coding upstream 146687 4168321 ~ 4197972 (+)
G93191 NA non-coding downstream 9613 4354742 ~ 4376530 (+)
G93281 NA non-coding downstream 68132 4413261 ~ 4413921 (+)
G93294 NA non-coding downstream 115142 4460271 ~ 4465434 (+)
G93293 NA non-coding downstream 116000 4461129 ~ 4467311 (+)
G93288 NA non-coding downstream 150924 4496053 ~ 4502052 (+)
LOC120565391 NA other upstream 31144 4284755 ~ 4313515 (+)
G93150 NA other upstream 126833 4174602 ~ 4217826 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other upstream 520877 3714919 ~ 3823782 (+)
G92848 NA other upstream 737834 3600978 ~ 3606825 (+)
LOC120565459 NA other upstream 749271 3540034 ~ 3595388 (+)
trmt1l trmt1l other downstream 340095 4685224 ~ 4713233 (+)
G93613 NA other downstream 1690240 6035369 ~ 6051520 (+)
G93638 NA other downstream 1856956 6202085 ~ 6214017 (+)
rhpn1 rhpn1 other downstream 2009763 6354892 ~ 6381598 (+)
G93938 NA other downstream 3004681 7349810 ~ 7350587 (+)

Expression


Co-expression Network