alg6 (alg6,LOC102784959)


Basic Information

Item Value
gene id alg6
gene name alg6,LOC102784959
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12670221 ~ 12690258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811305.1
ACAGTGACGtatacaggaaatgaaaacgTGTTCCAAAAAGCAGACAGATTTTTAGCTTTTATTTCTCCTCTTTAAGCTAATTTTAACGGTCGAAGTCATGCAAACGTGGAGTCTCGTATCAATGTGTGTGTTGCTAGGTATTGTTGTGAGATGGGGCGTTTCGTTAAATTCATATTCAGGGGCGGGGAAACCTCCAATGTTTGGCGATTATGAAGCTCAAAGGCACTGGCAAGAAGTAACCTACAACCTCCCTCTCCAGGAATGGTACTTTAACACCAGTGAGAATGACTTGAACTACTGGGGTCTTGACTACCCTCCTCTCACTGCTTACCACAGCCTGGTCTGTGCTTACGTAGCCAAAACGATAAACCCTGAATGGGTGGATCTCCACAAATCCAGAGGTTATGAAAGTCCAGCGCACAAGTTATTCATGAGAGCTACAGTCCTGGTGGCAGATTTGTTCATATACATCCCTGCTGtggttttatactgtttatACCTGACTGACGGGTCCACTAAAAAAAAGgttTGCACTGTGTTCTGCTTCCTTCTATACCCAGGCCTAATTCTCATTGACTATGGTCATTTCCAGTACAATGGAGTGAGTCTGGGCTTTGCCCTGTGGGGGGTTCTGGCTCTGGGACTGGGCTGGGATGCGTTGGGCTCACTGGCCTTTTGCCTGGCTCTCAACTACAAACAGATGGAGCTGTACCATGCTCTGCCCTTCTTCTGCTACTTGCTGGGGAAGAGTTTCAAACTGGGCCTGATGGGGCGAGGGCTTTTCCTGTTGGTGAGAATTGCTTCAACAGTGTTGGTGACTTTTGCCCTCTGCTGGCTGCCCTTCCTGTCTGACCCCGGTGACGCCATGCAGGTGGTCAGGAGGATCTTTCCCGTGGCTCGCGGCCTGTTTGAGGATAAGGTGGCCAACACATGGTGCAGCTTGAACATCCTGATAAAGATCAGATCCATTCTGTCCATTGACTCCCAGATCTACATCAGtTTTGCCTGCACTCTCCTGGCAGTCCTACCTTCCTGCGTCAGACTTCTGATGAAGCCCACCTTCTGGCAGTTTAAACTGGCCTTGGTCAATTCATCTCTGgcgtttttcctcttctcctatCAAGTCCACGAGAAGTCTATCCTCTTGGCTGCCTTGCCCGCCTGCCTCTTGCTGAATGATCTCCCCTTGATGGTTATCTGGTTCCTGCAGGCCTCTACTTTCAGCATGCTGCCTCTGTTTCTGAAGGACGGCCTGCTGGTGCCCTATGCTGTGACCTCGCTGGCCTTCCTCTTCTTCAGCATCTATCTCCTGTCTGCACTGGAGCACTGTTCAGAGGAAGAGCTGAGACTGGGAGCCTACCACGGGCTGTTGTTCTGCCTACCCAAACTGGACCTGGCCTGGATTGTAAGATGGAAGTTCTACATCAGCGTCTCAGCCATGGCTGGTCTGAGTGTCGTGACTGTAGCTCTGGTTCCTCCAACACATCTACCCGACTTGTTTCCAATGTTGGTGTCTTCTACTGCTTTCCTGCACTTCTTAGGAACATTTATATACTTCAACATTGTCCAGTTCAGCGAGCCACCCAGCAGAAAGAGCCAGAAGAAGAACGACTGAATGGTGCCAAAGACTGTGATATGcacagcactttttttttcttttctaaaccTAATTTTGTTTCAGGGAAGCCAGCGTCGCACCATGGGACATGTTAATGTGCATGAAGGCTTTCACTCGTGCCATCATGTCCCCAGTGCAAATAGCACACATGTAGAACTGTAACGACAAGTCGATCGAAAGAGAATGAATTGGCAACggttttgataatcaattaatcattgaAGTCAATTTTCAAGCAAAAAGGCCAAACATTTGATGGGTCCAGGTTCTCAAATATGACAATTTTCTGTTTCCTCTTCCTGCATTATAGTAAATTAAGACATTTGATGACATCACCTTGGGCTTTCGGAAATTGTGACAGGCATTTTCAGTTTTCTGAACTTTTATAGACCAagtgattaatcgagaaaatctgcagattaataGTTAAGGCAAATAATTTTTAGTTGCAGCCCAACATATGCTTATTAAAGAGATGTTGTGGGCTGAAAAATCATTATACTACAAAATGGCAACTCGGAAGATGTGACATCaaaggaaagaagaggaaaatgATATTTCTCCAGTTTGGACCAAATAAATTTCAGAAATCAGTCCTCTCTGTTACTAAAACAGAATCTCGGTTAACCTCTTTTCTTTAATTCTTTTCATTGGCCACTCTTCAAACTACACCATTGCTGGCTAATCTCACAAGTACATATAGACAAGCAGTGTGCAGCCTACACATTTGACCTTACATAACTTTGTGCCTGTATGCTCAAGCTACAGACGGTGGCCACAATAACAGGAACGCCTGTTGTAAAGTTTAGTTATTGTTAAGACCACGGGGAGAGGTGTCGATTTAATTTTGTGGTCACTTTTAAAGCCATAGCTGTTGGTGCAGCTATACTTATTGATATTGTAAGGCATTCCTGTTATTTTGTCAACCCTCAGTACCTCCTCTGGGAAATGTGATGAAAACACGTACGTAACTGTTAATCATTATTCATGTgaacttttaatgtttttctactgtatatttttatcATTCAAAGTTCTTTTGTACAAACTtagtttttgtgaaaataaattaaaatgtctcaatGACCTAAAATGAA
>XM_039811306.1
TCGTTAAATTCATATTCAGGTAGGAAGAGCGTGGAGTTCAACGTTAACATGCTACAGTCATCTTTGCTACATTGCTGCTCGTTTCAGTGTAACGGGCGGGGAAACCTCCAATGTTTGGCGATTATGAAGCTCAAAGGCACTGGCAAGAAGTAACCTACAACCTCCCTCTCCAGGAATGGTACTTTAACACCAGTGAGAATGACTTGAACTACTGGGGTCTTGACTACCCTCCTCTCACTGCTTACCACAGCCTGGTCTGTGCTTACGTAGCCAAAACGATAAACCCTGAATGGGTGGATCTCCACAAATCCAGAGGTTATGAAAGTCCAGCGCACAAGTTATTCATGAGAGCTACAGTCCTGGTGGCAGATTTGTTCATATACATCCCTGCTGtggttttatactgtttatACCTGACTGACGGGTCCACTAAAAAAAAGgttTGCACTGTGTTCTGCTTCCTTCTATACCCAGGCCTAATTCTCATTGACTATGGTCATTTCCAGTACAATGGAGTGAGTCTGGGCTTTGCCCTGTGGGGGGTTCTGGCTCTGGGACTGGGCTGGGATGCGTTGGGCTCACTGGCCTTTTGCCTGGCTCTCAACTACAAACAGATGGAGCTGTACCATGCTCTGCCCTTCTTCTGCTACTTGCTGGGGAAGAGTTTCAAACTGGGCCTGATGGGGCGAGGGCTTTTCCTGTTGGTGAGAATTGCTTCAACAGTGTTGGTGACTTTTGCCCTCTGCTGGCTGCCCTTCCTGTCTGACCCCGGTGACGCCATGCAGGTGGTCAGGAGGATCTTTCCCGTGGCTCGCGGCCTGTTTGAGGATAAGGTGGCCAACACATGGTGCAGCTTGAACATCCTGATAAAGATCAGATCCATTCTGTCCATTGACTCCCAGATCTACATCAGtTTTGCCTGCACTCTCCTGGCAGTCCTACCTTCCTGCGTCAGACTTCTGATGAAGCCCACCTTCTGGCAGTTTAAACTGGCCTTGGTCAATTCATCTCTGgcgtttttcctcttctcctatCAAGTCCACGAGAAGTCTATCCTCTTGGCTGCCTTGCCCGCCTGCCTCTTGCTGAATGATCTCCCCTTGATGGTTATCTGGTTCCTGCAGGCCTCTACTTTCAGCATGCTGCCTCTGTTTCTGAAGGACGGCCTGCTGGTGCCCTATGCTGTGACCTCGCTGGCCTTCCTCTTCTTCAGCATCTATCTCCTGTCTGCACTGGAGCACTGTTCAGAGGAAGAGCTGAGACTGGGAGCCTACCACGGGCTGTTGTTCTGCCTACCCAAACTGGACCTGGCCTGGATTGTAAGATGGAAGTTCTACATCAGCGTCTCAGCCATGGCTGGTCTGAGTGTCGTGACTGTAGCTCTGGTTCCTCCAACACATCTACCCGACTTGTTTCCAATGTTGGTGTCTTCTACTGCTTTCCTGCACTTCTTAGGAACATTTATATACTTCAACATTGTCCAGTTCAGCGAGCCACCCAGCAGAAAGAGCCAGAAGAAGAACGACTGAATGGTGCCAAAGACTGTGATATGcacagcactttttttttcttttctaaaccTAATTTTGTTTCAGGGAAGCCAGCGTCGCACCATGGGACATGTTAATGTGCATGAAGGCTTTCACTCGTGCCATCATGTCCCCAGTGCAAATAGCACACATGTAGAACTGTAACGACAAGTCGATCGAAAGAGAATGAATTGGCAACggttttgataatcaattaatcattgaAGTCAATTTTCAAGCAAAAAGGCCAAACATTTGATGGGTCCAGGTTCTCAAATATGACAATTTTCTGTTTCCTCTTCCTGCATTATAGTAAATTAAGACATTTGATGACATCACCTTGGGCTTTCGGAAATTGTGACAGGCATTTTCAGTTTTCTGAACTTTTATAGACCAagtgattaatcgagaaaatctgcagattaataGTTAAGGCAAATAATTTTTAGTTGCAGCCCAACATATGCTTATTAAAGAGATGTTGTGGGCTGAAAAATCATTATACTACAAAATGGCAACTCGGAAGATGTGACATCaaaggaaagaagaggaaaatgATATTTCTCCAGTTTGGACCAAATAAATTTCAGAAATCAGTCCTCTCTGTTACTAAAACAGAATCTCGGTTAACCTCTTTTCTTTAATTCTTTTCATTGGCCACTCTTCAAACTACACCATTGCTGGCTAATCTCACAAGTACATATAGACAAGCAGTGTGCAGCCTACACATTTGACCTTACATAACTTTGTGCCTGTATGCTCAAGCTACAGACGGTGGCCACAATAACAGGAACGCCTGTTGTAAAGTTTAGTTATTGTTAAGACCACGGGGAGAGGTGTCGATTTAATTTTGTGGTCACTTTTAAAGCCATAGCTGTTGGTGCAGCTATACTTATTGATATTGTAAGGCATTCCTGTTATTTTGTCAACCCTCAGTACCTCCTCTGGGAAATGTGATGAAAACACGTACGTAACTGTTAATCATTATTCATGTgaacttttaatgtttttctactgtatatttttatcATTCAAAGTTCTTTTGTACAAACTtagtttttgtgaaaataaattaaaatgtctcaatGACCTAAAATGAA

Function

symbol description
alg6 Predicted to enable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity. Predicted to be involved in oligosaccharide-lipid intermediate biosynthetic process and protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ic. Orthologous to human ALG6 (ALG6 alpha-1,3-glucosyltransferase).

NR:

description
dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K03848 ALG6; alpha-1,3-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811305.1 True 2715 mRNA 0.44 14 12670221 12690258
XM_039811306.1 False 2629 mRNA 0.44 14 12670381 12690258

Neighbor

gene id symbol gene type direction distance location
foxd3 foxd3,LOC102785247 coding upstream 6328 12661919 ~ 12663893 (+)
atg4c atg4c coding upstream 147787 12512606 ~ 12522434 (+)
angptl3 angptl3 coding upstream 171174 12494754 ~ 12499047 (+)
usp1 NA coding upstream 211076 12450052 ~ 12459145 (+)
ebna1bp2 NA coding upstream 608596 12056138 ~ 12061625 (+)
efcab7 efcab7 coding downstream 12886 12703144 ~ 12717685 (+)
pgm1 pgm1 coding downstream 29833 12720091 ~ 12730969 (+)
cachd1 cachd1 coding downstream 206029 12896287 ~ 12994764 (+)
ak4 ak4,LOC102785469 coding downstream 459592 13149850 ~ 13158641 (+)
dnajc6 dnajc6,LOC102786137 coding downstream 473447 13163705 ~ 13204369 (+)
G94813 NA non-coding upstream 750184 11916631 ~ 11920037 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding upstream 1011149 11651522 ~ 11659072 (+)
G94747 NA non-coding upstream 1092960 11576788 ~ 11577261 (+)
G94706 NA non-coding upstream 1429984 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 1475291 11194647 ~ 11194930 (+)
G94997 NA non-coding downstream 175654 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 304977 12995235 ~ 12995654 (+)
G95027 jak1,LOC102785183 non-coding downstream 417431 13107689 ~ 13112320 (+)
G95040 NA non-coding downstream 456047 13146305 ~ 13146795 (+)
LOC120564967 NA non-coding downstream 682186 13372444 ~ 13375668 (+)
lrp8 LOC103355569 other upstream 227141 12161638 ~ 12443080 (+)
znhit6 znhit6,LOC102790327 other upstream 848339 11789135 ~ 11821882 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other upstream 1212075 11359690 ~ 11458146 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 1721905 10946932 ~ 10948316 (+)
G94598 NA other upstream 1728977 10916925 ~ 10941244 (+)
ror1 ror1 other downstream 52547 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 315310 13005568 ~ 13100445 (+)
G95046 NA other downstream 482767 13173025 ~ 13220372 (+)
LOC120565776 NA other downstream 645476 13335734 ~ 13342098 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other downstream 689140 13379398 ~ 13382747 (+)

Expression


Co-expression Network