wdr18 (wdr18)


Basic Information

Item Value
gene id wdr18
gene name wdr18
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 832241 ~ 854498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811564.1
CCGGAAGTGACGTATCAGTGCTGCCCGCGGCGCGCCGGGTCTCTTCTCCGCGTGTGTGTCTTGTTGTGGTGTATGCAACATGGCGGCTCCTCTGGAGGTAATAGTTAGCAGCGACTCCGCAGCGCAGATGTGGAACAGCACCGTGTTCGACCTGCACAGCGGCTCGAGCCTGCTGTCGTACCGGGGCGGGAACAGCACGGCCCGGACCCTCACCGTGCTCCGCGGGGAGTACCTGCTGTCCGCGCAGCTCGGCAAGAACTTCATCAACGTGTGGGAGATCCAGAGGAAGGACCAGCTGCAGCAGAAGCTGCTGTGTCCAGGTGTGGTCACCTGTCTCTCTGCATCTCCTAACGGGCTCTTCCTCGCCGCCGGGGTCGCAGAGGCCCTTTACCTGTGGGAGgtGTCGACGGGGAAGCTGCTGTCCGTCCTCAGTCGTCACTATCAGGACGTCACGTGTCTGAAGTTCACAGACGACGGCAGCCATTTTGTTTCTGGAGGAAAAGATAACCTGGCTCTGGTGTGGAGTCTGGCCagtgtgatCCAGCTGGATTTAAGCCACACCCCCGAGCCGCGTCATGTCCTGTCTCGTCACTCTCTACCAATCACAGACCTGCACTGCGGCATGATGGGAGCTCAGGCCAGAGTGGCCACCTCCTCCTTAGACCAAACCGTCAAGGTTTGGGAGTTGTCTTCTGGTGAGTTGCTGCTGTCCGTCCTGTTTGACGTGGAGATCATGtctgtgacctttgacccctgcGAGTACTTCCTGTTCTGTGGAGGAAGTGACGGAAACATCTTCCAGGTGTCTCTGTGCAGTCAGAGTCTCAGTCGGGACAAATCCTTCCAGTCCGACAACGACGGGAACCAGATCTTCAAGGGACACAGGAACTTGGTGACGTGTCTGTCGGTGTCGATGGACGGGACGTTGCTTCTCTCTGGCTCTCACGATGAGACTGTTCGACTCTGGGACATCCAGAGCAAACAGAGCATCCGCTGCCTCGCACACAAAGgTGCGGTGACTAACGCCATCATCATGCCGGCTCCGGCGAACATGTTCCTGCCCGACAGCCGGCCGGCCGTCCCACTGCCGCGCTTCAGCCGCCACTTACACACCGCGGACGGCGCCGAGGCCGCGGACGTCTGCGTCCGCATCGGACTCTACACACAGgAGGAAGAGAATTCGTACCTGCAGAAAGTTGACAGGCTGAACTCTCTGATGAACGCCGTGACGGACAAGTCGGTATTTGGAGACGGCGAGAACACGAAGGTTCGAGTCGCCGAACTGGAAGAAGAAGTTCAGACTCTGAAGAAGGTCAATAAAGATCTGTACGACTTCTCCAGTCAGCTGCTCACTAAAcctacatagacacacacacagacacacacacagacacacacacacacacacacacacacacatttgaactCTGTAATAATTTTTGTtgttggaaaataaaagtcttgtTTTGGTAGGA

Function

symbol description
wdr18 Acts upstream of or within Kupffer's vesicle development and determination of left/right symmetry. Predicted to be located in dynein axonemal particle. Predicted to be part of Rix1 complex and nuclear pre-replicative complex. Is expressed in Kupffer's vesicle; forerunner cell group; liver; and pancreas. Orthologous to human WDR18 (WD repeat domain 18).

NR:

description
WD repeat-containing protein 18

GO: NA

KEGG:

id description
K14829 IPI3; pre-rRNA-processing protein IPI3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811564.1 True 1475 mRNA 0.57 10 832241 854498

Neighbor

gene id symbol gene type direction distance location
stx6 stx6 coding upstream 24002 784199 ~ 808239 (+)
LOC120565732 NA coding upstream 44367 786702 ~ 787874 (+)
LOC120565788 LOC100695038,LOC103366337,LOC107380922,LOC107082714,LOC105918713,LOC105028844,LOC106604646,LOC106611650 coding upstream 672784 141925 ~ 159457 (+)
grin3bb grin3b coding downstream 31861 886359 ~ 955236 (+)
med16 med16 coding downstream 129153 983651 ~ 1009213 (+)
plppr3b NA coding downstream 156249 1010747 ~ 1025143 (+)
LOC120566171 LOC108248660 coding downstream 467907 1322405 ~ 1380914 (+)
LOC120565564 LOC102210819 coding downstream 683501 1537999 ~ 1574777 (+)
G92029 NA non-coding upstream 6195 824574 ~ 826046 (+)
G92027 NA non-coding upstream 13916 816582 ~ 818325 (+)
G92018 LOC103369104,LOC104936604,LOC101078280 non-coding upstream 58284 722115 ~ 773957 (+)
G92022 LOC104936604,LOC103369104 non-coding upstream 63567 765454 ~ 768674 (+)
G92015 NA non-coding upstream 137491 694433 ~ 694750 (+)
G92062 NA non-coding downstream 5975 860473 ~ 860703 (+)
G92066 NA non-coding downstream 45723 900221 ~ 984045 (+)
G92093 NA non-coding downstream 110270 964768 ~ 965650 (+)
G92094 NA non-coding downstream 114493 968991 ~ 1063760 (+)
G92095 NA non-coding downstream 116375 970873 ~ 971521 (+)
G92019 NA other upstream 73265 722373 ~ 758976 (+)
G91903 bmpr1a other upstream 238364 580807 ~ 593877 (+)
G91887 NA other upstream 265775 455709 ~ 566466 (+)
G91897 NA other upstream 289332 541691 ~ 542909 (+)
G91842 NA other upstream 489549 257904 ~ 342692 (+)
G92146 NA other downstream 314323 1168821 ~ 1170046 (+)
G92157 NA other downstream 348389 1202887 ~ 1204046 (+)
trmt13 NA other downstream 366312 1220810 ~ 1228679 (+)
G92169 dbt,LOC102778223 other downstream 386889 1241387 ~ 1256194 (+)
LOC120565410 camk4,LOC102194929,LOC102785978 other downstream 609221 1463719 ~ 1535856 (+)

Expression


Co-expression Network