grin3bb (grin3b)


Basic Information

Item Value
gene id grin3bb
gene name grin3b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 886359 ~ 955236 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811565.1
ATCATCAGGGTTTTCCAGAGGAGCGGCAGAGCGATGCAGAGCGTGTGGCAGgatgtctctctcctcctcctccctgtgcACCTCCCGGCTGTCTCTCTTCTCCgtcctccccctcttcctccccctcctcatCTCCCTCTTGCCTCCTTGCCTCCTCCACCCGCAGCCGTGTCTCCTCCTGGCTCAGATCGGACACTCGGTGAGGGTTGGCGCGCTGCTGCCTGCGCAGCGGGCGGCGAGCGTGCACGTGCAGGCGGCTCTGAGCCGCGCGGTGAAAGAGCAGGAGACCTCGCTGCCCTACAACCTGAGTCTGCAGCTGGTGACCCTGCAGCCGGCCGCCGCCGACCCGGAGTCCGTGCTGCGCTGCGTGTGTCAGGGCGCCGCCACGGTGTCAGCCATGCTCGCCTTCCCACAGAGCCGCGAGGAGCTGCTGCACGTGGACCTCATGGCCGCCTTCCTGCAGATCCCGTTCATCAGCGTCCTGGAGACCGGAGAGACACTCAACACACAGAACCGGTTCCACCTGCAGATGGCGATGGGCGTTCCAGACTCGGCCCTGTCAGCGCTGCTGTTGGCGGTGTTGCGGCGTTCCGGTTGGCTGGAGGGAACCGTGGTTCTGTGCCGGGGCTGGGAGGAGGCCCGCGGGCTGCTGAGGCGGCTGGACGACGCCGGTGACAGCAGAGCATCATGGGACGGTGGCGGGCCCGGCTGGCACGTTCGCGCCGTCCTGAACCTGACGCAGTCGGCGCACGACGACACGCAGATCCACGACTTTCTCTCGCGCCACTTCGGGCAGAACCCAGCGGTCCCGGCGGCTGTGCTGCTGTTCGGCGCTGAGCCGCAGTGCGCGGCGGCCGTACTGCGTGGCGCCCAGGATCTGGGCCTCACGCTACCCATGATGCACTGGGTGCTGGGCCAGCCGCTGCGGCCCGACGCGCTGCACGCCATCGGCCTGCCGCTCGGCCTGCTGGCCTACGGAGAGGTGGAGCGCAAGCCGCTGGACTTCTACGTCACAGACGCTCTGATGCTCGTCAGCCGAGCAGTCGGCGCCGCGGCCGCCGTTAGGCCGGACCTGGCGCTGAGCCAGAACACGCTGCGCTGCCACGACACACCGCCGCCCGGAGGGCACTTCCTGTCCAGGTTCCTGTCCAACACATCGTTCTCCGGGCTGACTGGTACGGTGCGAGTGCATCCGAACCGCTCGGAGGTTGTGAACTCGCAGCAGTTCCACATCTGGAGTCTGCGGCGTGACGCGCTGGGCCAGCCCAGCTGGGTAACGGTGGGCCGCTGGGCTGCCGGCCGCCTCACCGTGGAGGAACAGGAAGTGTGGCGTGGACCCAAACCTCGGCAGCGCCCCGAGGGGCCGGACGGGGACACCCGGCGGCGCTGGAGGCCGGGCACGCCGGCCGCGGGGAGCTGGGTCCGGGTGGTCACGCTGGTGGAGCATCCCTTCGTGTTCACGCGGGACGTGGACGACGAGGGCCGCTGCCCCGCCGGACAGTTCTGCCTGGACGCCGGCGCCAACAGCTCCGATGCTCTGGAGAGATACTTCCGGGACGTGGCGGGCGGGAACAGCAGCTTCCTGCCTGCAGGGTTCAGCAAGTGTTGCTATGGTTACTGCGTGGACCTGCTGGAGAAGCTGGCGGAGGATCTGGGCTTCCAGTTCGAGCTTTACATCGTGGGAGATGGGAAGTATGGCGCGTGGAAgggcgggcgctggacggggcTGGTGGGGGATCTGCTGGGCGGGCTGGCAGACATGGCCGCCGCCTCCTTCAGCATCAACTCAGCGCGCAGCCGCGTCATCGACTTCACCTCGCCCTTCTTCTCCACCAGCCTGGGCATCCTGGTGCGCAGCAAGGACACGGCGGCACCCATCGGCGCCTTCATGTGGCCGCTGCACTGGTCGATGTGGGTGGGCATCTTCGCGGCGCTGCACATCACCGCGCTCTTCCTCACGCTGTACGAGTGGAAGAGTCCATACGGCATGACTCCGCATGGACGTAACCGCATCCGTGTTTTCTCGTACTCCTCGGCGCTGAACCTGTGCTACGCCATCCTGTTTGGACGCACCGTGGCCTCGAAGACACCAAAGTGTTGGACGGGCCGGTTCCTGATGAACCTGTGGGCCATCTTCTGCCTGCTGGTGCTGTCCAGCTACACCGCCAACCTCGCTGCCGTCATGGTAGGAGAGAAAACCTTTGAGGAAGTGTCGGGGATCCACGACGCAAAGCTGCACCATTCGTCGCGGGGTTTCCGTTTCGGGACAGTGAGGGAGAGCAGCGCCGAGGATTACATGAAGAAGAGTTTCCCCGAGATGCACGAGTACATGAGGCGCTTCAACGAGCCGACCACGCCGCAAGGAGTCGCCACGCTCAAGACAGATCCTCCCCAGCTGGACGCCTTCATCATGGACAAAGCTCTGCTGGACTACGAGGTCTCCATCGACGCCGACTGCAAACTGGCAACAGTCGGGAAACCGTTCGCCATCGAGggtTACGGTATCGGTCTCCCCCAGAACTCTCCTCTGACCTCCAACGTCTCGGAGTTCATCAGCAGATATAAGTCGGAGGGTTTCATGGATCTGCTGCACGACAAGTGGTACAAAGTGGTTCCCTGTGGAAACCGCGTGTTCGCCGTCACTGAGacTCTCCAGATGGGGATCAGCCATTTCTCGGGTCTGTTCGTGTTGCTGTGTGTGGGCGTGGCTGGAGCACTGTTGACCCTCGCCGGAGAACACGCCTTCTACCAACTCGTCCTGCCGCACATCCGTCGGCGCCAGAACCTCAAATACTGGCTGCACACATCACagaAGATTCACCGTGCTCTGAACATGACGTATGAAGACGTGAAGAGGCAGCGAGCCGACAAAGACAAAAGCTGTAACCTGGAGAAGTCTCAGCCCCCCCCaggcccccccgcccccccaccccccggaGCGTCGGCCAAGTGGAACAACGAGGCCAGTAAGGACGCTGCCGCCACTGCCGCCGCTAAGGATGCCCGAGACTTCAAGCGAGTCCACTTCAACCTGGAGACCCTCAACACGCGCCGCCTGCTCGCTCGCATCGCTACTTCTGAAGCCAAGGGAGGCGTGGCCAAGCCTGACGGGATGGGGGCAGCCACGCTGAGGGCGGGGCCTAACAGCAGACTGGGGGAAGCAGCGGGGCCTAACAGCAGACTGTGTGAGAACGGAGGACCGGGTGCTTCTCTGGCCAGCCTGGTGCTctcccttccctcctcctcctcctcctctacttccTGCTCCACCCGCCACAGTTTACCCAACACGTCTACGGCTGGAGCCCCGCCCCCAGCGGCTGGAGCCCCGCCCCCAGTGGCGATGGAGCCGCCGCGGCCCGGCGAGCTTCAGGAGCTGCAGGAACAGATCGATGAAATGAGGGACAAACTGAGGACGGCATTAGCCAGGAGGGCCCACATCCAGACTTCTCTGAACAAACCTGTTGCCACGGTGACAGACAACATGACAACAGCAGTAGGAGCAGCGTCCGCTGGCGCCCCGCCCGCTGGCGCCTCGCCCGCTTGCGCCACGCCCGCATGCGCCACGCCCACTGGCGCCCCGGTAACACCTTTCCCTGCTAACATGAAAAGCGTGACGACCATGACGGACCCGCCTCACAAAGTCCTGTCCAAAGTCCGGCCCTTCCACAGCAGAACGACCAATCAGAGGAGGTGATGCTCACTGTACCTGGCGCCCATTTTAAACTGTGATCCAGAATTAAAACCTGCAGAATTCAGCAGACTGTTTTTCTGCTCTGGGTGGCGATGTGTTAACATGTTTGATTTCATTTGGTTTTtgaatgtatttaaaatgtgtgtgagttCCGTGTGGCCGTGCTCATCAACCTTTACACAAGGTGGACATTTTAAACTTGCGGA
>XM_039811566.1
TGAGCCGTGATGTCTGCAGGGACAGAAGGGATAAAGCCAGCGGTTTGTAACTAAACCAGCCGAGAGCGGAGATGTCAGCAGGGACAGACGAGAGGAAACAGAGGTAAACAGAGAACCGGTTCCACCTGCAGATGGCGATGGGCGTTCCAGACTCGGCCCTGTCAGCGCTGCTGTTGGCGGTGTTGCGGCGTTCCGGTTGGCTGGAGGGAACCGTGGTTCTGTGCCGGGGCTGGGAGGAGGCCCGCGGGCTGCTGAGGCGGCTGGACGACGCCGGTGACAGCAGAGCATCATGGGACGGTGGCGGGCCCGGCTGGCACGTTCGCGCCGTCCTGAACCTGACGCAGTCGGCGCACGACGACACGCAGATCCACGACTTTCTCTCGCGCCACTTCGGGCAGAACCCAGCGGTCCCGGCGGCTGTGCTGCTGTTCGGCGCTGAGCCGCAGTGCGCGGCGGCCGTACTGCGTGGCGCCCAGGATCTGGGCCTCACGCTACCCATGATGCACTGGGTGCTGGGCCAGCCGCTGCGGCCCGACGCGCTGCACGCCATCGGCCTGCCGCTCGGCCTGCTGGCCTACGGAGAGGTGGAGCGCAAGCCGCTGGACTTCTACGTCACAGACGCTCTGATGCTCGTCAGCCGAGCAGTCGGCGCCGCGGCCGCCGTTAGGCCGGACCTGGCGCTGAGCCAGAACACGCTGCGCTGCCACGACACACCGCCGCCCGGAGGGCACTTCCTGTCCAGGTTCCTGTCCAACACATCGTTCTCCGGGCTGACTGGTACGGTGCGAGTGCATCCGAACCGCTCGGAGGTTGTGAACTCGCAGCAGTTCCACATCTGGAGTCTGCGGCGTGACGCGCTGGGCCAGCCCAGCTGGGTAACGGTGGGCCGCTGGGCTGCCGGCCGCCTCACCGTGGAGGAACAGGAAGTGTGGCGTGGACCCAAACCTCGGCAGCGCCCCGAGGGGCCGGACGGGGACACCCGGCGGCGCTGGAGGCCGGGCACGCCGGCCGCGGGGAGCTGGGTCCGGGTGGTCACGCTGGTGGAGCATCCCTTCGTGTTCACGCGGGACGTGGACGACGAGGGCCGCTGCCCCGCCGGACAGTTCTGCCTGGACGCCGGCGCCAACAGCTCCGATGCTCTGGAGAGATACTTCCGGGACGTGGCGGGCGGGAACAGCAGCTTCCTGCCTGCAGGGTTCAGCAAGTGTTGCTATGGTTACTGCGTGGACCTGCTGGAGAAGCTGGCGGAGGATCTGGGCTTCCAGTTCGAGCTTTACATCGTGGGAGATGGGAAGTATGGCGCGTGGAAgggcgggcgctggacggggcTGGTGGGGGATCTGCTGGGCGGGCTGGCAGACATGGCCGCCGCCTCCTTCAGCATCAACTCAGCGCGCAGCCGCGTCATCGACTTCACCTCGCCCTTCTTCTCCACCAGCCTGGGCATCCTGGTGCGCAGCAAGGACACGGCGGCACCCATCGGCGCCTTCATGTGGCCGCTGCACTGGTCGATGTGGGTGGGCATCTTCGCGGCGCTGCACATCACCGCGCTCTTCCTCACGCTGTACGAGTGGAAGAGTCCATACGGCATGACTCCGCATGGACGTAACCGCATCCGTGTTTTCTCGTACTCCTCGGCGCTGAACCTGTGCTACGCCATCCTGTTTGGACGCACCGTGGCCTCGAAGACACCAAAGTGTTGGACGGGCCGGTTCCTGATGAACCTGTGGGCCATCTTCTGCCTGCTGGTGCTGTCCAGCTACACCGCCAACCTCGCTGCCGTCATGGTAGGAGAGAAAACCTTTGAGGAAGTGTCGGGGATCCACGACGCAAAGCTGCACCATTCGTCGCGGGGTTTCCGTTTCGGGACAGTGAGGGAGAGCAGCGCCGAGGATTACATGAAGAAGAGTTTCCCCGAGATGCACGAGTACATGAGGCGCTTCAACGAGCCGACCACGCCGCAAGGAGTCGCCACGCTCAAGACAGATCCTCCCCAGCTGGACGCCTTCATCATGGACAAAGCTCTGCTGGACTACGAGGTCTCCATCGACGCCGACTGCAAACTGGCAACAGTCGGGAAACCGTTCGCCATCGAGggtTACGGTATCGGTCTCCCCCAGAACTCTCCTCTGACCTCCAACGTCTCGGAGTTCATCAGCAGATATAAGTCGGAGGGTTTCATGGATCTGCTGCACGACAAGTGGTACAAAGTGGTTCCCTGTGGAAACCGCGTGTTCGCCGTCACTGAGacTCTCCAGATGGGGATCAGCCATTTCTCGGGTCTGTTCGTGTTGCTGTGTGTGGGCGTGGCTGGAGCACTGTTGACCCTCGCCGGAGAACACGCCTTCTACCAACTCGTCCTGCCGCACATCCGTCGGCGCCAGAACCTCAAATACTGGCTGCACACATCACagaAGATTCACCGTGCTCTGAACATGACGTATGAAGACGTGAAGAGGCAGCGAGCCGACAAAGACAAAAGCTGTAACCTGGAGAAGTCTCAGCCCCCCCCaggcccccccgcccccccaccccccggaGCGTCGGCCAAGTGGAACAACGAGGCCAGTAAGGACGCTGCCGCCACTGCCGCCGCTAAGGATGCCCGAGACTTCAAGCGAGTCCACTTCAACCTGGAGACCCTCAACACGCGCCGCCTGCTCGCTCGCATCGCTACTTCTGAAGCCAAGGGAGGCGTGGCCAAGCCTGACGGGATGGGGGCAGCCACGCTGAGGGCGGGGCCTAACAGCAGACTGGGGGAAGCAGCGGGGCCTAACAGCAGACTGTGTGAGAACGGAGGACCGGGTGCTTCTCTGGCCAGCCTGGTGCTctcccttccctcctcctcctcctcctctacttccTGCTCCACCCGCCACAGTTTACCCAACACGTCTACGGCTGGAGCCCCGCCCCCAGCGGCTGGAGCCCCGCCCCCAGTGGCGATGGAGCCGCCGCGGCCCGGCGAGCTTCAGGAGCTGCAGGAACAGATCGATGAAATGAGGGACAAACTGAGGACGGCATTAGCCAGGAGGGCCCACATCCAGACTTCTCTGAACAAACCTGTTGCCACGGTGACAGACAACATGACAACAGCAGTAGGAGCAGCGTCCGCTGGCGCCCCGCCCGCTGGCGCCTCGCCCGCTTGCGCCACGCCCGCATGCGCCACGCCCACTGGCGCCCCGGTAACACCTTTCCCTGCTAACATGAAAAGCGTGACGACCATGACGGACCCGCCTCACAAAGTCCTGTCCAAAGTCCGGCCCTTCCACAGCAGAACGACCAATCAGAGGAGGTGATGCTCACTGTACCTGGCGCCCATTTTAAACTGTGATCCAGAATTAAAACCTGCAGAATTCAGCAGACTGTTTTTCTGCTCTGGGTGGCGATGTGTTAACATGTTTGATTTCATTTGGTTTTtgaatgtatttaaaatgtgtgtgagttCCGTGTGGCCGTGCTCATCAACCTTTACACAAGGTGGACATTTTAAACTTGCGGA

Function

symbol description
grin3b Predicted to enable several functions, including glycine binding activity; ion channel activity; and neurotransmitter binding activity. Predicted to contribute to NMDA glutamate receptor activity and calcium channel activity. Predicted to be involved in ionotropic glutamate receptor signaling pathway; protein insertion into membrane; and regulation of calcium ion transport. Predicted to be located in neuronal cell body. Predicted to be part of NMDA selective glutamate receptor complex. Predicted to be active in hippocampal mossy fiber to CA3 synapse and plasma membrane. Predicted to be integral component of postsynaptic density membrane.

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 3A-like isoform X3

GO: NA

KEGG:

id description
K05214 GRIN3B; glutamate receptor ionotropic, NMDA 3B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811565.1 True 3900 mRNA 0.64 10 886359 955236
XM_039811566.1 False 3502 mRNA 0.63 10 891578 955236

Neighbor

gene id symbol gene type direction distance location
wdr18 wdr18 coding upstream 31861 832241 ~ 854498 (+)
stx6 stx6 coding upstream 78120 784199 ~ 808239 (+)
LOC120565732 NA coding upstream 98485 786702 ~ 787874 (+)
LOC120565788 LOC100695038,LOC103366337,LOC107380922,LOC107082714,LOC105918713,LOC105028844,LOC106604646,LOC106611650 coding upstream 726902 141925 ~ 159457 (+)
med16 med16 coding downstream 28415 983651 ~ 1009213 (+)
plppr3b NA coding downstream 55511 1010747 ~ 1025143 (+)
LOC120566171 LOC108248660 coding downstream 367169 1322405 ~ 1380914 (+)
LOC120565564 LOC102210819 coding downstream 582763 1537999 ~ 1574777 (+)
LOC120565565 LOC108250349,LOC108249964 coding downstream 670338 1625574 ~ 1630680 (+)
G92062 NA non-coding upstream 25656 860473 ~ 860703 (+)
G92029 NA non-coding upstream 60313 824574 ~ 826046 (+)
G92027 NA non-coding upstream 68034 816582 ~ 818325 (+)
G92018 LOC103369104,LOC104936604,LOC101078280 non-coding upstream 112402 722115 ~ 773957 (+)
G92022 LOC104936604,LOC103369104 non-coding upstream 117685 765454 ~ 768674 (+)
G92093 NA non-coding downstream 9532 964768 ~ 965650 (+)
G92094 NA non-coding downstream 13755 968991 ~ 1063760 (+)
G92095 NA non-coding downstream 15637 970873 ~ 971521 (+)
G92102 NA non-coding downstream 53486 1008722 ~ 1112847 (+)
G92109 NA non-coding downstream 90427 1045663 ~ 1046099 (+)
G92019 NA other upstream 127383 722373 ~ 758976 (+)
G91903 bmpr1a other upstream 292482 580807 ~ 593877 (+)
G91887 NA other upstream 319893 455709 ~ 566466 (+)
G91897 NA other upstream 343450 541691 ~ 542909 (+)
G91842 NA other upstream 543667 257904 ~ 342692 (+)
G92146 NA other downstream 213585 1168821 ~ 1170046 (+)
G92157 NA other downstream 247651 1202887 ~ 1204046 (+)
trmt13 NA other downstream 265574 1220810 ~ 1228679 (+)
G92169 dbt,LOC102778223 other downstream 286151 1241387 ~ 1256194 (+)
LOC120565410 camk4,LOC102194929,LOC102785978 other downstream 508483 1463719 ~ 1535856 (+)

Expression


Co-expression Network