pdcb (pdc,LOC104921827,LOC102780712)


Basic Information

Item Value
gene id pdcb
gene name pdc,LOC104921827,LOC102780712
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14024755 ~ 14028859 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811907.1
TAAGACCAATTTCATTGGCTGGAAGTGACACACACCATCCAGCAACAGATAGCTCAGTGAAGTGATCGAGTGTAGACCAGTGCAAGGTTAGCTACTGACACAAAGGGAGGACTTCACTGTGACTGTGGGAGGTAGCGAACAAGAAAAATGTCTGACAGAATGATTGATTTGGAAGAGACCGCAACCCAAACAGGTCCAAAAGGAGTCATCAATGACTGGAGGAGGTTTAAGCTGGAAAGTATGGATCAGGAAAACTTGCCACCTGCAAAAAAGGAACTGCTGAGACAAATGTCATCCCCGAGCAAGCCAAAAGATGACACCAGATCAAACCTTAACCGCAAGATGAGTGTCCAAGAGTATGAGCTGCTtaaggaggaggatgagggatGTCTAAAGAAATACAGAAAGCGGTGCATGCAGGAGATGCATGATAAACTCAGCTTTGGGCCCAGGTTTGAAGGTGTGCATGACCTGGCCAGTGGAGAGGCCTTCCTAGAAGTCATCGAGAAGGAACATTACAGCACGGTGGTGGTTGTCCACATCTACAAGGTTGGGGTCAAAGGTTGTGAGGAACTCAACAACTGCTTTGACTGCCTGGCCACTGAGTACCCCACTGTAAAGTTCTGCAGGATTGATGCCGTCGCATCCGGTGCTTCCGAGCGGTTCTCAGATGAGGTTTTGCCTACGCTGCTGGTGTACAAGGCTGGAGAACTATTAGGAAACTTCCTGGCCTGCACGCAGCACCTAAACGAGGAGTTCTTCGCCACTGATGTGGAGGCCTTCCTCAACAGCTATGGCCTGTTGCCAGAGAAAGAGCTGGCCAGCATGGAAGATGAAGAGGAAAACGATGTAGAGTAAACAAAGAGTTTGCCTgctgaggaagaaagaaagCTGTCTCGGAGGGCTGGATAGAGAGCAATGAAAGACAATTCATGATATCAGACAAGTTGTTCTTTTGTAAAGAATAGTTCTATAAAAAGCTATAACATCTCCACTAGTTCACTAGTGTTTGAGGATTGCTCTCTAAAGGATAAATTTTACAAGCAGTTAGAGAAACCATGATGTCCCACATATGGGTGCTCTCAAATATGATGTAAAGTAAGGTGAGAAGATAGAGCGATTCTTTTTGAAAATATATCACAAATTACCTCTCCACCACCCAAAGAAAAGCCAAACCAGCTAActgtaatttaaaataattacaaTATTCTTTTTTGTAACAATAGACAATATTACATGCTGTAAGtacttgtaaaaaatattaatttgaaTACTTTTTTGTAGCATTAGTTTGGGTTGATCTGTACAAAAGTTATTTATAAATCCAGggtttgtacagagtgaaatcctcaaatgtcaacaatatttaaACACATGTATACTGTGTAGGTCTCTGTGGTGTTTTTgccatgatttaaaaaataaatactttaacaGGCTAAGTAGGACAGGGACTAAGAAGAGGCAAAATCATTATGGATGTGGAAAAAATTTTGTGTAAACATGTCTTCCATCTGTCCAGTACAACATACGCTTGCTTCTTAAGCCAATGTGGTGtctggaaaaaaacattcatgaGCCTCTGGTATTTTACCATCAACAGTGAAACATCATCAGTGAGGAGTTCATCCATGTCTGTGTATTTCCTATTGTGAAAGTGGGAGAAAGTCATGGAAATATACAAAAAAGAAATCAGAGTCTTGGGCTTTCTTAGTGACTCAGCACGACggtcaatatcatcatcatcatatttgattttattaAGGATTTGTTAACTGCGTGTTGGAATATGTTGAAACATAGCCTACTATAGATGTtgttaagaataaaaaaaataataataataaaatgacataaaatagcAAA
>XM_039811908.1
ATAAGACCAATTTCATTGGCTGGAAGTGACACACACCATCCAGCAACAGATAGCTCAGTGAAGTGATCGAGTGTAGACCAGTGCAAGGTTAGCTACTGACACAAAGGGAGGACTTCACTGTGACTGTGGGAGTTTTTATCTTACAGGTAGCGAACAAGAAAAATGTCTGACAGAATGATTGATTTGGAAGAGACCGCAACCCAAACAGGTCCAAAAGGAGTCATCAATGACTGGAGGAGGTTTAAGCTGGAAAGTATGGATCAGGAAAACTTGCCACCTGCAAAAAAGGAACTGCTGAGACAAATGTCATCCCCGAGCAAGCCAAAAGATGACACCAGATCAAACCTTAACCGCAAGATGAGTGTCCAAGAGTATGAGCTGCTtaaggaggaggatgagggatGTCTAAAGAAATACAGAAAGCGGTGCATGCAGGAGATGCATGATAAACTCAGCTTTGGGCCCAGGTTTGAAGGTGTGCATGACCTGGCCAGTGGAGAGGCCTTCCTAGAAGTCATCGAGAAGGAACATTACAGCACGGTGGTGGTTGTCCACATCTACAAGGTTGGGGTCAAAGGTTGTGAGGAACTCAACAACTGCTTTGACTGCCTGGCCACTGAGTACCCCACTGTAAAGTTCTGCAGGATTGATGCCGTCGCATCCGGTGCTTCCGAGCGGTTCTCAGATGAGGTTTTGCCTACGCTGCTGGTGTACAAGGCTGGAGAACTATTAGGAAACTTCCTGGCCTGCACGCAGCACCTAAACGAGGAGTTCTTCGCCACTGATGTGGAGGCCTTCCTCAACAGCTATGGCCTGTTGCCAGAGAAAGAGCTGGCCAGCATGGAAGATGAAGAGGAAAACGATGTAGAGTAAACAAAGAGTTTGCCTgctgaggaagaaagaaagCTGTCTCGGAGGGCTGGATAGAGAGCAATGAAAGACAATTCATGATATCAGACAAGTTGTTCTTTTGTAAAGAATAGTTCTATAAAAAGCTATAACATCTCCACTAGTTCACTAGTGTTTGAGGATTGCTCTCTAAAGGATAAATTTTACAAGCAGTTAGAGAAACCATGATGTCCCACATATGGGTGCTCTCAAATATGATGTAAAGTAAGGTGAGAAGATAGAGCGATTCTTTTTGAAAATATATCACAAATTACCTCTCCACCACCCAAAGAAAAGCCAAACCAGCTAActgtaatttaaaataattacaaTATTCTTTTTTGTAACAATAGACAATATTACATGCTGTAAGtacttgtaaaaaatattaatttgaaTACTTTTTTGTAGCATTAGTTTGGGTTGATCTGTACAAAAGTTATTTATAAATCCAGggtttgtacagagtgaaatcctcaaatgtcaacaatatttaaACACATGTATACTGTGTAGGTCTCTGTGGTGTTTTTgccatgatttaaaaaataaatactttaacaGGCTAAGTAGGACAGGGACTAAGAAGAGGCAAAATCATTATGGATGTGGAAAAAATTTTGTGTAAACATGTCTTCCATCTGTCCAGTACAACATACGCTTGCTTCTTAAGCCAATGTGGTGtctggaaaaaaacattcatgaGCCTCTGGTATTTTACCATCAACAGTGAAACATCATCAGTGAGGAGTTCATCCATGTCTGTGTATTTCCTATTGTGAAAGTGGGAGAAAGTCATGGAAATATACAAAAAAGAAATCAGAGTCTTGGGCTTTCTTAGTGACTCAGCACGACggtcaatatcatcatcatcatatttgattttattaAGGATTTGTTAACTGCGTGTTGGAATATGTTGAAACATAGCCTACTATAGATGTtgttaagaataaaaaaaataataataataaaatgacataaaatagcAAA

Function

symbol description
pdc Predicted to enable phospholipase inhibitor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and phototransduction. Predicted to be located in several cellular components, including cytosol; photoreceptor inner segment; and photoreceptor outer segment.

NR:

description
phosducin

GO: NA

KEGG:

id description
K08327 PDC; phosducin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811907.1 False 1866 mRNA 0.40 4 14024756 14028859
XM_039811908.1 True 1881 mRNA 0.40 4 14024755 14028859

Neighbor

gene id symbol gene type direction distance location
ptgs2b ptgs2 coding upstream 24801 13995495 ~ 13999954 (+)
hmcn1 hmcn1 coding upstream 76776 13857034 ~ 13947979 (+)
swt1 LOC102799620 coding upstream 204747 13796094 ~ 13820008 (+)
insl5a LOC104957723,LOC104925860,LOC103372744 coding upstream 608756 13413361 ~ 13415999 (+)
LOC120565922 NA coding upstream 655748 13367294 ~ 13369007 (+)
tprb tpr coding downstream 5398 14034257 ~ 14065550 (+)
fcho1 NA coding downstream 52697 14081556 ~ 14144941 (+)
acsbg2 acsbg2,LOC103367493 coding downstream 144860 14173719 ~ 14203364 (+)
LOC120564948 zap70 coding downstream 316722 14345581 ~ 14361643 (+)
mob3a LOC104921817,LOC103368804,LOC101067073,LOC100699828,LOC104944351,LOC107392871,LOC108238466,LOC103137270 coding downstream 333936 14362795 ~ 14368554 (+)
G95239 NA non-coding upstream 53616 13968931 ~ 13971139 (+)
G95236 arpc5,LOC104921830,LOC103367487,LOC103137250 non-coding upstream 69871 13953149 ~ 13954884 (+)
G95179 NA non-coding upstream 189497 13830850 ~ 13835258 (+)
G95177 ivns1abp non-coding upstream 196274 13825457 ~ 13828481 (+)
G95173 ivns1abp non-coding upstream 199486 13822853 ~ 13825269 (+)
G95287 NA non-coding downstream 116146 14145005 ~ 14145318 (+)
G95297 NA non-coding downstream 177480 14206339 ~ 14208562 (+)
G95299 NA non-coding downstream 191712 14220571 ~ 14222594 (+)
LOC120565959 NA non-coding downstream 229426 14258285 ~ 14263886 (+)
G95372 NA non-coding downstream 340063 14368922 ~ 14369226 (+)
LOC120564965 LOC102299696 other upstream 625011 13390823 ~ 13399744 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 642008 13379398 ~ 13382747 (+)
LOC120565776 NA other upstream 682657 13335734 ~ 13342098 (+)
G95046 NA other upstream 804383 13173025 ~ 13220372 (+)
raver2 raver2 other upstream 924310 13005568 ~ 13100445 (+)
G95460 NA other downstream 590499 14619358 ~ 14621413 (+)
LOC120565380 NA other downstream 660523 14689382 ~ 14704353 (+)
dennd1b NA other downstream 781509 14810368 ~ 14923845 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 1495070 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 2260964 16289823 ~ 16301000 (+)

Expression


Co-expression Network