LOC120566020 (LOC103374322,LOC104940880,LOC103131468,LOC106964853)


Basic Information

Item Value
gene id LOC120566020
gene name LOC103374322,LOC104940880,LOC103131468,LOC106964853
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9589156 ~ 9603575 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812221.1
AGGGGGCCCAGTTTCCATCTCTGACCACAGGAAATCTGTGTGTGGTTCAAATGCAAGCAAGTCCAAGTCGCTTTTTGCAGtctacttgtgtgtgtgaggaacaTACGGCAGCATGACCAGCCATGTGGAGCATCCTGCTGCAGGCTACAGGAAGATCTTTGAGACCGTGGAAGAGCTGAACGAACCTATACCTGCTAAGATCTCTGgtgtgatACCTTCATGGCTGGGCGGCAGTCTTCTCAGGATGGGTCCAGGTCTTTTCGAGGTGGGAGATGAACCTTTCTACCACCTGTTCGATGGACAGGCTCTCATGCACAAGTTTGACCTGAAGGATGGTCAGGTGACCTACTACAGGAAGTTCATCAGGACGGATGCGTATGTTCGTGCCATGACAGAGAACAGAATAGTCATCACTGAGTTTGGAACAGCAGCCTACCCAGACCcatgcaaaaacatcttttccagatTCTTCACTTACTTCAGAGGCATTGAGGTGACTGATAACTGCGTAGTGAACGTCTATCCAATCGGTGAGGACTTCTACGCTGTCACGGAGACCAATTACATCACTAAAGTTGACCCTGATTCCCTGGAGACTTTAAAGAGGGTGGACCTGTGTAAGTACCTCTCAGTGAATGGGGTGACTGCGCACCCCCACACTGACACAGACGGTACAGTCTATAATATCGGCAACTGCTTTGGCAAGAACATGAGTCTGGCTTACAACATTGTCAAGATCCCACCGGCTCAGAACGACAATTCCGATCCCCTGGAGAAATCCCAGGTTGTCGTTCAGCTACCCAGCAGTGAGAGGTTAAAACCCTCCTACGTACACAGTTTCGGTATGACAGAcaattattttgtgtttgtggagCAGCCGGTGAAGATCAACCTGCTCAAGTTCCTGTCGGCTTGGAGCGTCAGAGGAGCCACATACATGGACTGCTTTGAATCCAACGACAGCATGGGGACATGGTTCCACCTGGCCACTAAGGACCCAGCAGATTACCTGAGCAGCCACAAGTTCAGAACATCAGCTTTCAACCTCTTTCACCATATCAACACCTATGAGGACCAGGGATTCATCGTGGTCGACCTCTGCACGTGGAAAGGTCATGACTTTGTGTATAACTACCTGTACCTGGCCAACATAAGGGAGGAGTGGGAGGAAGTGAAGAAAGCTGCGATGAGAGCTCCTCAGCCTGAGGTCAGACGATACGTACTGCCGCTGGATATACACAGGGAAGAGCAGGGAAAGAATCTGGTGTCTCTGCCCTACACTACAGCAACAGCTGTCCTTCACAGTGACGGCACCATCTGGCTCGAACCTGAAGTCCTCTTTTCTGGACCTAGACAggCCTTTGAGTTTCCACAGATTAACTACTCTCTGTGTCGTGGACAGAAGTATTCCTTTGCCTACGGTCTGGGACTCAACCACTTCATCCCTGACAGGATAGTCAAGCTGAACGTGCAGACCAAACAGACCTGGGTGTGGCAGGAGGAAGAGTGTTACCCATCAGAGCCGCTGTTCGTACCAACACCTGGAGCCACAGAGGAGGACGATGGTGTGCTGCTGAGCATCGTGGTGAAGCCAGGCACAGAGAGACCGGGCTTCCTGCTGGTGCTGGATGCCATGACACTGACAGAGCTGGCCAGGGCCGAGGTCAACGCCATCATCCCCGTGACCCTCCACGGCATGTACAAACCATGATCCACACGTTGACCCCAACCCAGCCAAGACATATCCTTAACCCTCCTTCTCGTCAAGCGTGCACCTGTTGTCCTCCGGTTTGGTTTACCTGTTTATAAAGCTTAAAGTAGCCTCTTTATGATTACCCAATTGTATGTTATATCATTTTAAGCCAACTTCATAAGTtgttaccactagttttacacttctttATGGAATTGATGGTGATAAACAtcatttacatgaaattatCGGTAATCTTTGAGTAAAATGAGCAGAAATTAGGAATTATCTCGACTAATAGTTAAGGTCAGAGAAACATATGTTTATGGATGATCACAGATTTTCACCCGGTTAGACCATAAAAGTAATGATCAATAAGTggatggaaccatccatgttatttttgggaacTTTGGTTGAAAAGAAAGCCATATTTCTAatgtagaaactttgaaaacaggtcaaatttgaccagaggacaacatgagggttaaatagGCTACACCGCCTTCACTTCCCTGTCAGCCAACTACAAAGTTGTGAGTGTCTTTTGATTGGAATGTAAAAACGGTTTCTTCTTATAGACAATTGAACAGCGTCTTGTAGCTGGTGGATAAAAACAGTGCCTGTGTA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: retinal Mueller cells isomerohydrolase-like

GO: NA

KEGG:

id description
K11158 RPE65; retinoid isomerohydrolase / lutein isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812221.1 True 2326 mRNA 0.48 14 9589156 9603575

Neighbor

gene id symbol gene type direction distance location
depdc1a depdc1 coding upstream 1487 9575258 ~ 9587669 (+)
trnah-gug_12 NA coding upstream 16787 9572298 ~ 9572369 (+)
LOC120566012 NA coding upstream 83229 9406710 ~ 9505927 (+)
LOC120566014 NA coding upstream 115782 9462445 ~ 9473374 (+)
LOC120564889 rgs2,LOC103367537 coding upstream 505299 9080859 ~ 9083857 (+)
fnbp1l fnbp1l,LOC102783810 coding downstream 11220 9614795 ~ 9671788 (+)
hps3 hps3 coding downstream 162501 9766076 ~ 9785140 (+)
LOC120565507 NA coding downstream 182217 9785792 ~ 9796989 (+)
LOC120565621 NA coding downstream 247550 9851125 ~ 9865455 (+)
fxr1 fxr1,LOC106531534 coding downstream 363779 9967354 ~ 9979742 (+)
G94238 NA non-coding upstream 37465 9547714 ~ 9551691 (+)
G94231 NA non-coding upstream 48097 9540537 ~ 9541059 (+)
LOC120566016 NA non-coding upstream 93799 9493981 ~ 9495357 (+)
G94232 NA non-coding upstream 103191 9484003 ~ 9485965 (+)
LOC120566015 NA non-coding upstream 151535 9434721 ~ 9437621 (+)
G94259 NA non-coding downstream 58557 9662132 ~ 9679737 (+)
G94266 bcar3,LOC102779191,LOC102207586,LOC101480816 non-coding downstream 88354 9691929 ~ 9693033 (+)
G94373 NA non-coding downstream 297620 9901195 ~ 9902122 (+)
LOC120565916 NA non-coding downstream 305332 9908907 ~ 9912100 (+)
G94400 NA non-coding downstream 377847 9981422 ~ 9983844 (+)
G94239 NA other upstream 31588 9552296 ~ 9557568 (+)
LOC120566011 NA other upstream 45621 9384505 ~ 9543535 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other upstream 420279 9147162 ~ 9168877 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other upstream 1302720 8237370 ~ 8286436 (+)
LOC120565614 NA other upstream 1683909 7896145 ~ 7905247 (+)
G94281 NA other downstream 214046 9817621 ~ 9879198 (+)
LOC120565620 NA other downstream 240696 9844271 ~ 9846275 (+)
G94376 NA other downstream 298710 9902285 ~ 9903189 (+)
ttc14 ttc14 other downstream 330038 9933613 ~ 9948237 (+)
LOC120565490 NA other downstream 382144 9985719 ~ 10159881 (+)

Expression


Co-expression Network