foxf2b (foxf2,LOC102792585)


Basic Information

Item Value
gene id foxf2b
gene name foxf2,LOC102792585
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7586141 ~ 7590299 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812331.1
GGTGGCTCTATATTCGTCACTGATTTCAGGGAGATTTGCAGGCGCACAGTGTGGATGAGGAGAAGGGGTGGGGGGCTCTCGCAGAGGGAAGAAAGATTTATGAAATGATAGGTGGTCGAGCTTTGTTTGGCTGGACTTTTGCGCGCAATAAGTcgactttttttgtgtttcctCCACTTGAGGGATTATTAACGCGGTCGATGGCCACCCGGCGCGCCACACAGCACCACTTAGCGCCGCTGTGACACAACAGTGGAGCCCCCGTGTCGAGCTAAAGCCCTGGACACTCAGTCTCCAGTGGATAACCAGCTCCCCccactctctcttcctcttcctctctctgtcagtgCGTACTCGCCGTGCGTTCTGCATGCGTCAAGGGAGCACCGTGCGTAACTGGAGACTCGTGCGTAACTGGAGACAGATTTCACTCCATTTTGCGCTGGGATTCTGAGGACCACTGGCGGTGTAACGCTCACTTGCAAGGACACTGACCACTGGATCCCGATTTATTTCTCTTTTGAAACATCTCACGGTTCgtcttttctccctccctctcttcactcTACGCCAGTCGTACGTCAGAGCTGACATGACGACCGAGACCCCTCAGCAGCAGCTGGACCCTCCGCCTCCTCTGAGATCCAGCCCGGCGTCCGGCGCCCTGCACCCCGCCATGCTGAGCCCACAAGCCGCCACAGAAAGTTCGTCCACCGCCATTAAAGGAAAGAAGACGAGCTCCGGTTTACGGCGACCGGAAAAGCCGCCGTACTCCTACATCGCTCTCATCGTTATGGCAATACAGAGCTCCCCCACCAAACGACTGACACTCAGTGAGATCTACCAGTTCCTCCAGGCTCGCTTCCCATTCTTCAGGGGCTCATATCAGGGCTGGAAGAACTCGGTCCGGCATAATCTTTCGCTGAACGAGTGTTTCATCAAGCTGCCCAAAGGGCTGGGCAGGCCGGGGAAAGGCCATTACTGGACCATCGATCCGGGCAGCGAGTTCATGTTTGAGGAAGGCTCGTTTCGTCGCAGACCCAGAGGCTTCAGAAGAAAATGTCAAGCTCTGAAGCCCATGTATCGGATGATGAACGGAATAGGCTTCGGCACCTCCATTCTCCCGCAGAGTTTTGACTTTCAATCTCCATCCGCCACTCTCGCCTGTCACGGCAACAGCTACAACTTGGACATGATGAGCAATTCAATGGCCGGGGGATACGACGGGCTAAGCAGCGGCCACCACGTACCCCACATGTCCCCGAGCCCAGGCTCCACATACATGGCGAGCTGTCCTGTGCCGTCTAACGGGGAGTACGGaccagacagcagcagcagccccgTACCGTCCTCTCCAGCCATGGCCAGCGCGCTGGACGGCCACTCCCCGTACGCCAGTACATCCGCACACTGGGCGTCCTCCGGTGGGTCCCCCTACATCAAACAGCAGCCTATAACCTCCAGCAGCCCCGCATCCTCTGGTTTACACTCCGGCATGTCGCCTTACTCCCTGGAGCAGAGCTATCTTCACCAGAACGGCAGGGACAGCCACAGCACCGACATATCAGTGGGGATTCCACGCTATCAGAGCCATTCCTCGGTGTGCGACAGGAAAGATTTTGTGTTAAACTTTAACGGCATCTCGTCCTTCCACCCCTCGGCTGGCGGCTCCTActaccaccatcaccaccatcaccatCCCCAGAGCGTCTGCCAGGACATCAAACCCTGCGTGATGTGAGACACACGGGCACGCTCAAACTGCAGCTCTGTCACAGGAGAACAAAGCGAACATTTGTAatttctacttcttttttttctttttttttggaggaTTCATACGAGGATGTTTCATGGCGTCCGCTCTCACATGTTCGCCTCCTACATGCAGCCAAAGTAGCTTTTCTTGGTTGGACTTGAGAAACTTATGCATTGAaggaaatgaatgaagaaattCCCAGATgccttgaaaaagaaaaaaaaaaagaaaaaaaccacTCTGCCAATATGAACCCTGACAAGCGCTTTCTTCTTCTACAAAAGAAGCTTCAGAAAcacgacttttttttttatgtgtgtttgctCTTGTAACACGTGCAAACTAATTATATTCTATGTAACTATGTTCTATCCTATTCGAGTAACTACACACACGACGCTTTAGGCTAACATGAACTGCAACAAACCTTGCACTTATTGTATAACCCTTTGCCAACTTTTTTGTCCTGTAAAAGGTTTCAATAAAGCTGATATATATTTTAGGCTACA

Function

symbol description
foxf2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including genitalia development; regulation of cellular protein metabolic process; and roof of mouth development. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Part of transcription regulator complex.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: forkhead box protein F2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812331.1 True 2268 mRNA 0.52 2 7586141 7590299

Neighbor

gene id symbol gene type direction distance location
foxq1b foxq1,LOC104946962 coding upstream 4304 7580192 ~ 7581837 (+)
LOC120566212 irf4,LOC104941070 coding upstream 162321 7415441 ~ 7423820 (+)
LOC120566053 dusp22 coding upstream 172449 7398138 ~ 7413692 (+)
LOC120565797 slc22a23,LOC102794535 coding upstream 206797 7353848 ~ 7379344 (+)
LOC120565613 NA coding upstream 300382 7263547 ~ 7285759 (+)
LOC120564954 foxc1,LOC104932399,LOC104963658 coding downstream 13161 7603460 ~ 7605630 (+)
LOC120565646 LOC103354728,LOC102290039,LOC107394705 coding downstream 271915 7862214 ~ 7867728 (+)
LOC120565295 tsta3,LOC104953080 coding downstream 278292 7868591 ~ 7873986 (+)
rgs4 NA coding downstream 618154 8208453 ~ 8214500 (+)
LOC120564973 LOC103367494,LOC104965670,LOC104935957 coding downstream 1431218 9021517 ~ 9033680 (+)
G93985 NA non-coding upstream 60798 7524990 ~ 7525343 (+)
LOC120566054 NA non-coding upstream 190863 7394373 ~ 7395278 (+)
G93933 NA non-coding upstream 258455 7327171 ~ 7327686 (+)
G93932 LOC103399850 non-coding upstream 262715 7322066 ~ 7323426 (+)
G93931 NA non-coding upstream 264686 7318842 ~ 7321455 (+)
LOC120565893 NA non-coding downstream 301925 7892224 ~ 7895718 (+)
G94056 LOC104961454 non-coding downstream 363116 7953415 ~ 7955102 (+)
G94057 NA non-coding downstream 400989 7991288 ~ 7991555 (+)
G94059 NA non-coding downstream 512694 8102993 ~ 8103363 (+)
G94060 NA non-coding downstream 513191 8103490 ~ 8103804 (+)
G93938 NA other upstream 235554 7349810 ~ 7350587 (+)
rhpn1 rhpn1 other upstream 1204543 6354892 ~ 6381598 (+)
G93638 NA other upstream 1372124 6202085 ~ 6214017 (+)
G93613 NA other upstream 1534621 6035369 ~ 6051520 (+)
trmt1l trmt1l other upstream 2872908 4685224 ~ 4713233 (+)
LOC120565294 pycrl other downstream 288620 7878919 ~ 7890177 (+)
LOC120565614 NA other downstream 305846 7896145 ~ 7905247 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other downstream 647071 8237370 ~ 8286436 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other downstream 1556863 9147162 ~ 9168877 (+)
LOC120566011 NA other downstream 1794206 9384505 ~ 9543535 (+)

Expression


Co-expression Network