tmem38a (tmem38a)


Basic Information

Item Value
gene id tmem38a
gene name tmem38a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16022577 ~ 16031978 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812387.1
atgtaaACCTGCTGTCGTCTAAAAAGCGCAGCAGCTGGCACAGACCGCATAGGACGACGATGCTGCTGCTGAGGCTGGAGATGAGTGGTATTAATAGGAGGGCTTGAGTGTCACTGGCTTTCACTGTCGAGACCGGGGGGTTTGGTGGAGAGTCGGTGTACCGGGTTTGGGGGGGCTTCACGATCCAGACTGCGCAGTTGGAATaaaacaaactaacaaacaGGGACTCACTCTTAACAAACAGGCAACATGGAAGTGTTGGCAGTTCTTAATTTGGGCGATTTTGCCCAAGTTTTCTCCAAAATGGGAATGTTTCCCGTGTTTGATCTCGCTTATTACATCGTGTCCATCCTCTACCTCAAGTATGAGCCAGGCTCGGTGGAGGTTTCTCGCAGGAGTCCCGTGGCCTCCTGGCTCTGTGCCATGCTCTACTGCTTTGGTAGTTACATCCTGGCAGACATCATGCTTGGAAGCTCCCCCATCGACTATTTCCAATACAACAGCCACATCCTGCTGGCCTCAGCTGTCTGGTACCTCCTCTTTTACTGCCCACTGAACCTCTTCTATAAATGCGTGGCTTTCCTGCCCATCAAGCTGGTGTTGGTCGCCCTGAAGGAAGTTGTCCGCACTCGTAAGATCGCTGCAGGTGTTCACCACGCCCACCACGCCTACCACCACGGCTTCTTCATCATGGTCTTCGTTGGATACGTCAAAGGGTCTGGAGTGGCTCTCATTTCCAATTTTGAGCAGCTGCTGCGCGGTGTGTGGAGGCCCGACACCAATGAGATCCTCAACATGTCATTCCCAACCAAAGCCAGTCTGTACGGAGCCATCCTCTTCACCCTGCAGGAGGCTCACTGGCTGCCAGTGTCCAAGAGCACCCTCATCCTTGTCTTCACCCTCTTCATGGCCACATGCAAGGTGGTGATGACCGCCCGACACTCTCACGGCTCCCCCTTCGCCCTCATTGAGTCCTGGGTTTGCCATCTGCTGTTCGGCTCCCCTCTGGGTGGATCTGAGGAAGACCATCATCATCCTCCCGCCTCTGTCCCATCTTCACCTCTCAAAACCAAGGAGGAGCTGAGCGAAGGTACCCGCAAGAGGAAGGTCAAGAAAGCCGAGTAGGACGCCGAGCTGAAAACTGCATCATGGCCTCGACATGATGGGACCTCCCATTCCTAGGGAGAGGGGCAGTTTGATGTTTAACCAAATGAGACCCTTTCTATTAGAGCAAAATGGTGCTTTCTGCATTTTACACAGAACGAGGACTCTGTAAGTACCACGGCAAATGCTTCACACTTCAACCCAACCCGGACATTTGAAACCTATATATTTATGGGTTTGTGAACATCTGCATCTGTGCTCAACACTGTGTGGTGATCCAACTTCCTGTCTTTAAATAAAATCAAGAGAAACATTG

Function

symbol description
tmem38a Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in nuclear membrane and sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; musculature system; myotome; and somite. Orthologous to human TMEM38A (transmembrane protein 38A).

NR:

description
PREDICTED: trimeric intracellular cation channel type A

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016020 membrane cellular_component
GO:0005261 cation channel activity molecular_function

KEGG:

id description
K24013 TMEM38, TRIC; trimeric intracellular cation channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812387.1 True 1420 mRNA 0.52 6 16022577 16031978

Neighbor

gene id symbol gene type direction distance location
LOC120565334 LOC104959369 coding upstream 28411 15990550 ~ 15994166 (+)
LOC120564897 NA coding upstream 126155 15888576 ~ 15896422 (+)
gamt gamt,LOC102782137 coding upstream 247016 15771293 ~ 15775561 (+)
LOC120564991 NA coding upstream 299371 15720189 ~ 15723206 (+)
LOC120564879 NA coding upstream 500172 15513151 ~ 15522405 (+)
LOC120565290 comp coding downstream 2734 16034712 ~ 16047921 (+)
il12rb1 NA coding downstream 56768 16088746 ~ 16101551 (+)
mast3b mast3 coding downstream 99168 16131146 ~ 16165817 (+)
ndufa7 ndufa7 coding downstream 138485 16170463 ~ 16173569 (+)
LOC120565120 NA coding downstream 142930 16174908 ~ 16204745 (+)
G95877 NA non-coding upstream 41079 15980690 ~ 15981498 (+)
G95876 NA non-coding upstream 41951 15979752 ~ 15980626 (+)
G95873 NA non-coding upstream 48227 15973181 ~ 15974350 (+)
G95853 apba3,LOC104946396,LOC105938289,LOC107096970,LOC103395862,LOC107392810,LOC103143878 non-coding upstream 87997 15931028 ~ 15934580 (+)
G95844 NA non-coding upstream 126572 15895677 ~ 15896005 (+)
G95929 NA non-coding downstream 38376 16070354 ~ 16127940 (+)
G95952 NA non-coding downstream 134224 16166202 ~ 16169844 (+)
G96070 NA non-coding downstream 471167 16503145 ~ 16503811 (+)
G96075 NA non-coding downstream 560898 16592876 ~ 16593182 (+)
G96076 NA non-coding downstream 644229 16676207 ~ 16676577 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 389765 15523929 ~ 15632812 (+)
dennd1b NA other upstream 1098732 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 1318224 14689382 ~ 14704353 (+)
G95460 NA other upstream 1401164 14619358 ~ 14621413 (+)
LOC120564965 LOC102299696 other upstream 2622833 13390823 ~ 13399744 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 257845 16289823 ~ 16301000 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other downstream 288516 16320494 ~ 16376449 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 1823653 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 2614725 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 2750622 18782600 ~ 18785636 (+)

Expression


Co-expression Network