samd13 (samd13,LOC103130842)


Basic Information

Item Value
gene id samd13
gene name samd13,LOC103130842
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20564975 ~ 20568112 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812396.1
GAAGGAAGCTAAACCGATGAAGAAGGGCTAGTTGCCTTTACTTGATTAAATGTTGATTTTATTAGATGAATATCGCCTTTTATTAATGTGCAATATATCTCCGTGATTAGAACACTTTTTGTTATCCAAAGTACGCGTATAGCTCGGACGAACTGTGGTTGTCCAACAGGAATTATCTTTAATAAGTGAAGACGTCCAGTGAATGCCAGACTGCGAAAGAGAAACAATAATGGTGTTTGAGCTTTCAACCCATTAAGTTCTCCGAGAGAAGATATCTGATGAAAAATTACTGCAACGTTACAGATCCCGGCATGGAAGACAAGGCAAATGGCTCTGTTGACACCAAAAGCCCAGTGGAGAACGGCCAGCTGCCGGACCCTGCCAACTGGGGGGTCGCCGATGTCGTCAATTACTTCAAAGCAACAGGGTTCGAGGAGCAAGCCACAGCTTTCCAGGATCAGGAAATCGATGGCAAGTCCCTGCTTCTGATGACCCGTAACGATGTCCTGACAGGGCTGTCAATAAAGCTTGGCCCTGCACTTAAAATCTATGAGTATCACGTGAAGCCGCTGCAAACTCAACACCTGAAGAGCAATGCCTCGTAGCACCGCAGGCCGTCCCAAACAATGACAATCATCGTGTCAGGAGACCCCAGGTTAGCTGCCACTTCACAAAGACTCCTCTGGCCACAGTGGCACCTTAACAGGATTTGAATGCTGTATGTTTTTATAAGTGTGGACCCCAAAAATGGGTGGCACGTGGAGTTCACTCAGCTGTTTACCCTTTCAGCTATGCTTGAGATATGTATTttacttttgtgtgttttatttaaagaaGGAAATATGGGGTGAATACTCTGCGTGTGTACACATTTAAGTGTGTacgtatatgtgtgtttgtgtgcagagtGAATTAACCCatgttggtttaaaaaaaaaaaaagtatttgtataTAAGATTATATATAGTTTAAAACAGTGTATGTTGTCGTACCTGAACACTTTGATACATGCAGAAAATGAATGATTCTGGTGCATACAGTTTTGCCCTAAAATCTGTTTTTATGCTCTAAACTGTGCAGCCAAGTCCATGAAACGTCCTTAGCATGTAACAATGAAGCATTTTGTTATCCCAGACACAAAGAGCCAACCGAAAGCCTCATTGTCCCTGCACACCTACGTTATCTAGGCCAGAGGCTCTTGATATCAAAatatttatgtgtatatattctTATGTTCCTACCTGTGGTGCTTTCAGAATTGTCGCACAGACAACTGTATTGAAGTGTGTATGACCAATGTATATGTGCAACATAACACTGGAGTTTGAATATCTGAATCAAAGATTTGCAATAAATGGTGCTCTTTTCTCACAAAATAA
>XM_039812397.1
AGACGTCCAGTGAATGCCAGACTGCGAAAGAGAAACAATAATGGTGTTTGAGCTTTCAACCCATTAAGTTCTCCGAGAGAAGATATCTGATGAAAAATTACTGCAACGTTACAGATCGTAAGAGACTCACTTAGCTTACTATGGCTAAATTACTTTGTATATTAAAGCTCAATGACAGCACAGGCTTCCTTAATCACCGGTAGTCCAACCACAACATGGCTTCTGTTTGAAATAAACCACAGTTCGTGTTATAAAGAAGCTTATAAGCCAAGTTAAATTACTGCTGTAAGTTAGCCCCTCAGTTGGTAGCTTCATCATGAACTCATGTTTTGTGACACCAAGCACtgttaaaactaaactaaattaactctcagacttttttttaaacgaacACGCCAGTCTGAATTACAGCtaaatgtgtgtaaaatgatGCATAAAACTTAAATTACATAAGTTGTAAAACAATTATCTTGAATTTGAGTCTTTTACTCTAACTGCTAAAGCACGCAACTGCAGCATACACAGTGTATTTCGTGCTTGTGTAAAACCTATGGAAAACAAGTTTTACCTGTTTATGAAGTTATTTTATGTACAATTTGTGGGGAATATTGAGACCATTTGTTTTAAGTTGCTACatgttgtgttgtctgttttGTAGGGCAGCAACTAATACATAGTTGTATCATTGGTTGaatgtaataaaaagaaaaacatttttaatcgTTTAGTCTTTTAAACGTTCGAAAATATCGTAAAATGTCCAAGGTGAcgtgttttgtctgaccaaaacccaaagatgttCAGTTTACAATGAAATTGAACCGCAGAAACAGCAAATCCTTCacttttgagaagctggaaccagacaATGATAATTGACTTAAACCGTTTCGATTATCTGTCATCTATTTTCTGTTGATTGTCTAATTTATTATTGCCAAATCGTTTCATCTCTTTGAAGGTTTCTTAAGACAGAAATATGTGTAAAAAATGATGCACAAACCTTGAACTTCAATATTTTACTCAAATTGTGTCATAGTTTCAATTAACAACCATAACAAGCAGCTGCAGAATATACAGTGAACGTGGAAGGTTGGAAATAGTAGTTTAGTTTGACAGTTCATCTTAAGTCAAGGTCTACTTACTAGCTTTTCCTGGAGCTTTGAACCACATTTCACGATCTTCGTCAAAAGCCGGCATGGAAGACAAGGCAAATGGCTCTGTTGACACCAAAAGCCCAGTGGAGAACGGCCAGCTGCCGGACCCTGCCAACTGGGGGGTCGCCGATGTCGTCAATTACTTCAAAGCAACAGGGTTCGAGGAGCAAGCCACAGCTTTCCAGGATCAGGAAATCGATGGCAAGTCCCTGCTTCTGATGACCCGTAACGATGTCCTGACAGGGCTGTCAATAAAGCTTGGCCCTGCACTTAAAATCTATGAGTATCACGTGAAGCCGCTGCAAACTCAACACCTGAAGAGCAATGCCTCGTAGCACCGCAGGCCGTCCCAAACAATGACAATCATCGTGTCAGGAGACCCCAGGTTAGCTGCCACTTCACAAAGACTCCTCTGGCCACAGTGGCACCTTAACAGGATTTGAATGCTGTATGTTTTTATAAGTGTGGACCCCAAAAATGGGTGGCACGTGGAGTTCACTCAGCTGTTTACCCTTTCAGCTATGCTTGAGATATGTATTttacttttgtgtgttttatttaaagaaGGAAATATGGGGTGAATACTCTGCGTGTGTACACATTTAAGTGTGTacgtatatgtgtgtttgtgtgcagagtGAATTAACCCatgttggtttaaaaaaaaaaaaagtatttgtataTAAGATTATATATAGTTTAAAACAGTGTATGTTGTCGTACCTGAACACTTTGATACATGCAGAAAATGAATGATTCTGGTGCATACAGTTTTGCCCTAAAATCTGTTTTTATGCTCTAAACTGTGCAGCCAAGTCCATGAAACGTCCTTAGCATGTAACAATGAAGCATTTTGTTATCCCAGACACAAAGAGCCAACCGAAAGCCTCATTGTCCCTGCACACCTACGTTATCTAGGCCAGAGGCTCTTGATATCAAAatatttatgtgtatatattctTATGTTCCTACCTGTGGTGCTTTCAGAATTGTCGCACAGACAACTGTATTGAAGTGTGTATGACCAATGTATATGTGCAACATAACACTGGAGTTTGAATATCTGAATCAAAGATTTGCAATAAATGGTGCTCTTTTCTCACAAAATAA

Function

symbol description
samd13 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD13 (sterile alpha motif domain containing 13).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812396.1 False 1380 mRNA 0.41 5 20564975 20568112
XM_039812397.1 True 2267 mRNA 0.38 4 20565536 20568112

Neighbor

gene id symbol gene type direction distance location
adgrl2a adgrl2,LOC106923620 coding upstream 308381 20156410 ~ 20256594 (+)
cth cth coding upstream 978330 19574855 ~ 19586645 (+)
LOC120565772 srsf11,LOC103363396 coding upstream 1035481 19520942 ~ 19529494 (+)
fam43a fam43a,LOC102785697 coding upstream 1223919 19338866 ~ 19341056 (+)
htr2b htr2b coding upstream 1513007 19044010 ~ 19051968 (+)
dnase2b dnase2b,LOC108234386,LOC107392715 coding downstream 8411 20576523 ~ 20582264 (+)
LOC120565357 NA coding downstream 14394 20582506 ~ 20587615 (+)
rpf1 rpf1 coding downstream 20186 20588298 ~ 20595439 (+)
spata1 spata1,LOC102789799 coding downstream 30470 20598582 ~ 20605337 (+)
vtg2 NA coding downstream 52483 20620595 ~ 20630337 (+)
G96692 NA non-coding upstream 79089 20474807 ~ 20485886 (+)
LOC120565515 NA non-coding upstream 94228 20468553 ~ 20470747 (+)
LOC120565226 NA non-coding upstream 275594 20266651 ~ 20289381 (+)
G96653 NA non-coding upstream 515758 20047879 ~ 20049217 (+)
LOC120565691 NA non-coding upstream 517603 20047018 ~ 20047372 (+)
G96742 NA non-coding downstream 46820 20614932 ~ 20615202 (+)
G96753 NA non-coding downstream 103554 20671666 ~ 20674195 (+)
G96754 ssx2ip non-coding downstream 106145 20674257 ~ 20676737 (+)
G96758 NA non-coding downstream 133327 20701439 ~ 20701938 (+)
G96775 NA non-coding downstream 174955 20743067 ~ 20743775 (+)
prkacba prkacb other upstream 151 20548999 ~ 20564824 (+)
G96513 NA other upstream 1033298 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 1779339 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 1899862 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 2705564 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 843224 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 986782 21554894 ~ 21557731 (+)
G97093 NA other downstream 1122785 21690897 ~ 21782000 (+)
G97321 NA other downstream 1715534 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1917399 22485511 ~ 22491235 (+)

Expression


Co-expression Network