st3gal5


Basic Information

Item Value
gene id st3gal5
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 6032764 ~ 6077609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039813686.1
AATTAGACAAATATCAATCTAACTTTTCATTGTTGTTGAATTGAACACTCTTGTTGTTGAGTCAATTCCGAACAATCGGCTGTTAGATCAGTTGAGAGGAAGGCGTTTCCCATCATGCTccgggtcttgcagtcggtggagagCAAATGCTCCTGATGTCCTGAAGTTGTTGAATCAGACATGGAGAAACAACTCATTGTAGCTGTCTGTGAGCAGCCGGAGCTCTATAGGAACTCGTTTTTTGCAAAGAAACCGTACGAAAAAAGAGCTTTCCTAGGGAAAAGTATCCGGGGAAATTGGACTAACGTTATCTGGTGTGGGTTGGTACTGTGTATGGTTCTAGTTTTGCTGGTGTTGGTGATAGTCTTTGTACCATGGTTTGAGACAGAGACCAGCAAACCTCTGGCTTGGCACGTCAACAATGCACATAAAAAGCAGGTGCACGAGCACGTGCACAGAGTTTTGAAGAGTCCGTGTCGTCCCGGCAGCGCCAGGAGGAGCTTGTTAGCTCGACTTCGTGATACCACTCACATGACCCAGCCCTTCCTGTGGAGGGACGATCCGCTCCCTGATGACCTCTTCCTGTATCCGCCGCCATTTGGCTTCAGAAGTCTTCGGGGCAATGTAGAGGACCTGCTGAAGCTGCTGCCAGAAGGAGACTCCACGGCACCGCCTGAAAAGACGGATAAGTGTCGCCGCTGTGTGGTTATGGGAAATGGAGGCATTCTCAGAGGCCTGGAGCTGGGCCCACTGATCAACCGCTTTGACACCATTATCAGGTTAAACAGTGGCCCTCTGGGAGAGTTCAGTGTCGACGTCGGAAATAGAACCAGCATCAGGATGAGTTACCCAGAGGGAACACCGCACCGCTGGATCGACACAGACCCAGACACTGTGTTTGTAGCTGTGGTGTATAAACGTGTGGACATCAGCTGGATCTCTGCTATGATGAAGAAACTCACTGTGCCTCTGTGGGACTGGTTCTTCTTCTGGCAGAAGGTTCCAGATCAAATCCCTCTTGAGCCCCACAGGTTCAGACTTCTAAACCCAGAAATCATCAAAGAGACTGCGTTGGACCTGCTGGAATACCCTCCACCCAGACAACGCCTGTGGGGAAGCGACCAGaatgTGCCTACCATGGGTATCTCTGCACTGAATTTAGCCAGTCTGCTGTGTGACGAGGTGAGCCTGGCGGGCTTCAGCTACAACCTGTCCCGGCAGGGGGCGCCACTGCACTACTATGACCACCTGCACATAAACGCCATGCTGAAGCAGACTTCCCACAACGTGGACAGAGAGACGGAACTCCTGCTAAGCCTAGTGAGAGAGGGAGCCGTCACTGACCTGACACAGGGGATCCACTGCTCCTTCTGCCCCATATCAAAAGACATTCCTAGTAAGCAGACTAAACTGTACCAAACCTCTTCTTCCACTGGTGTTAAAGACGTATTGTCCACTTCCAAATAAAATGAGGTTAACAACAGAGCAAATGTATCGGTAATTAAAGTTCCAGAGGAATGTGATGAATGACTTACACGTGGCTTGATCTGCGAGATGCGTTTTAAGGACATTTTCGAAGCAGCTGTCAAATACATGAAGTATTTGAAAAATTATTCCTTCgcagtttaatttttttagttttaaaggttttaaatgtgttaagtTCATACTGGTATTTATCAGCACATCTATCTCATTCCATTATAAATTAGCAACATAACTTTACGGTTACTTTGTTTGTTCTGTCTATGGTTGTACAAATGCTGATTCACAAGAACTCtgatttgtgtatgtgtgtgtatatatatatatatatatatatatatatattaaacttGCTATGGtgcagtttatttttatttttctacgaCGTTTTTGGATTTGTGTCAGTCTTAATTCACTGTACTGCTGTTAGACAATGTAATtatgaaaatgtacatatgGGGGAAATAAATGCAAAGAGTAATTGAGTGTTTA
>XM_039813687.1
ATTAGACAAATATCAATCTAACTTTTCATTGTTGTTGAATTGAACACTCTTGTTGTTGAGTCAATTCCGAACAATCGGCTGTTAGATCAGTTGAGAGGAAGGCGTTTCCCATCATGCTccgggtcttgcagtcggtggagagCAAATGCTCCTGATGTCCTGAAGTTGTTGAATCAGACATGGAGAAACAACTCATTGTAGCTGTCTGTGAGCAGCCGGAGCTCTATAGGAACTCGTTTTTTGCAAAGAAACCGTACGAAAAAAGAGCTTTCCTAGGGAAAAGTATCCGGGGAAATTGGACTAACGTTATCTGGTGTGGGTTGGTACTGTGTATGGTTCTAGTTTTGCTGGTGTTGGTGATAGTCTTTGTACCATGGTTTGAGACAGAGACCAGCAAACCTCTGGCTTGGCACGTCAACAATGCACATAAAAAGCAGGTGCACGAGCACGTGCACAGAGTTTTGAAGAGTCCGTGTCGTCCCGGCAGCGCCAGGAGGAGCTTGTTAGCTCGACTTCGTGATACCACTCACATGACCCAGCCCTTCCTGTGGAGGGACGATCCGCTCCCTGATGACCTCTTCCTGTATCCGCCGCCATTTGGCTTCAGAAGTCTTCGGGGCAATGTAGAGGACCTGCTGAAGCTGCTGCCAGAAGGAGACTCCACGGCACCGCCTGAAAAGACGGATAAGTGTCGCCGCTGTGTGGTTATGGGAAATGGAGGCATTCTCAGAGGCCTGGAGCTGGGCCCACTGATCAACCGCTTTGACACCATTATCAGGTTAAACAGTGGCCCTCTGGGAGAGTTCAGTGTCGACGTCGGAAATAGAACCAGCATCAGGATGAGTTACCCAGAGGGAACACCGCACCGCTGGATCGACACAGACCCAGACACTGTGTTTGTAGCTGTGGTGTATAAACGTGTGGACATCAGCTGGATCTCTGCTATGATGAAGAAACTCACTGTGCCTCTGTGGGACTGGTTCTTCTTCTGGCAGAAGGTTCCAGATCAAATCCCTCTTGAGCCCCACAGGTTCAGACTTCTAAACCCAGAAATCATCAAAGAGACTGCGTTGGACCTGCTGGAATACCCTCCACCCAGACAACGCCTGTGGGGAAGCGACCAGaatgTGCCTACCATGGGTATCTCTGCACTGAATTTAGCCAGTCTGCTGTGTGACGAGGTGAGCCTGGCGGGCTTCAGCTACAACCTGTCCCGGCAGGGGGCGCCACTGCACTACTATGACCACCTGCACATAAACGCCATGCTGAAGCAGACTTCCCACAACGTGGACAGAGAGACGGAACTCCTGCTAAGCCTAGTGAGAGAGGGAGCCGTCACTGACCTGACACAGGGGATCCACTGCTCCTTCTGCCCCAGctga
>XM_039813688.1
CCGCTGATTGGCTCGCTGGCTGAAAGGAGGCTGCTAAGTGACGCTAGGATGAAGAGCTAACGGGATAAggtgatttattcattttaccGAAAGGATTCGTCATGGCGAAGCTGTGGAATCCATGGAAGGGACAAGATCCCTGAGAGCCAGGGGCTACCCGGCTTAATCACAGATACCAGAGGAGTTCCTAGATTCCACTGGGAAGGAGAACAACATGAGGCTCCCTAAACGCTGGGCAACATACAGGTGTGGGTTGGTACTGTGTATGGTTCTAGTTTTGCTGGTGTTGGTGATAGTCTTTGTACCATGGTTTGAGACAGAGACCAGCAAACCTCTGGCTTGGCACGTCAACAATGCACATAAAAAGCAGGTGCACGAGCACGTGCACAGAGTTTTGAAGAGTCCGTGTCGTCCCGGCAGCGCCAGGAGGAGCTTGTTAGCTCGACTTCGTGATACCACTCACATGACCCAGCCCTTCCTGTGGAGGGACGATCCGCTCCCTGATGACCTCTTCCTGTATCCGCCGCCATTTGGCTTCAGAAGTCTTCGGGGCAATGTAGAGGACCTGCTGAAGCTGCTGCCAGAAGGAGACTCCACGGCACCGCCTGAAAAGACGGATAAGTGTCGCCGCTGTGTGGTTATGGGAAATGGAGGCATTCTCAGAGGCCTGGAGCTGGGCCCACTGATCAACCGCTTTGACACCATTATCAGGTTAAACAGTGGCCCTCTGGGAGAGTTCAGTGTCGACGTCGGAAATAGAACCAGCATCAGGATGAGTTACCCAGAGGGAACACCGCACCGCTGGATCGACACAGACCCAGACACTGTGTTTGTAGCTGTGGTGTATAAACGTGTGGACATCAGCTGGATCTCTGCTATGATGAAGAAACTCACTGTGCCTCTGTGGGACTGGTTCTTCTTCTGGCAGAAGGTTCCAGATCAAATCCCTCTTGAGCCCCACAGGTTCAGACTTCTAAACCCAGAAATCATCAAAGAGACTGCGTTGGACCTGCTGGAATACCCTCCACCCAGACAACGCCTGTGGGGAAGCGACCAGaatgTGCCTACCATGGGTATCTCTGCACTGAATTTAGCCAGTCTGCTGTGTGACGAGGTGAGCCTGGCGGGCTTCAGCTACAACCTGTCCCGGCAGGGGGCGCCACTGCACTACTATGACCACCTGCACATAAACGCCATGCTGAAGCAGACTTCCCACAACGTGGACAGAGAGACGGAACTCCTGCTAAGCCTAGTGAGAGAGGGAGCCGTCACTGACCTGACACAGGGGATCCACTGCTCCTTCTGCCCCATATCAAAAGACATTCCTAGTAAGCAGACTAAACTGTACCAAACCTCTTCTTCCACTGGTGTTAAAGACGTATTGTCCACTTCCAAATAAAATGAGGTTAACAACAGAGCAAATGTATCGGTAATTAAAGTTCCAGAGGAATGTGATGAATGACTTACACGTGGCTTGATCTGCGAGATGCGTTTTAAGGACATTTTCGAAGCAGCTGTCAAATACATGAAGTATTTGAAAAATTATTCCTTCgcagtttaatttttttagttttaaaggttttaaatgtgttaagtTCATACTGGTATTTATCAGCACATCTATCTCATTCCATTATAAATTAGCAACATAACTTTACGGTTACTTTGTTTGTTCTGTCTATGGTTGTACAAATGCTGATTCACAAGAACTCtgatttgtgtatgtgtgtgtatatatatatatatatatatatatatatattaaacttGCTATGGtgcagtttatttttatttttctacgaCGTTTTTGGATTTGTGTCAGTCTTAATTCACTGTACTGCTGTTAGACAATGTAATtatgaaaatgtacatatgGGGGAAATAAATGCAAAGAGTAATTGAGTGTTTA

Function

NR:

description
lactosylceramide alpha-2,3-sialyltransferase isoform X1

GO: NA

KEGG:

id description
K03370 SIAT9; lactosylceramide alpha-2,3-sialyltransferase (sialyltransferase 9)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039813686.1 True 1977 mRNA 0.45 8 6051416 6077609
XM_039813687.1 False 1382 mRNA 0.52 7 6051417 6076412
XM_039813688.1 False 1909 mRNA 0.47 9 6032764 6077609

Neighbor

gene id symbol gene type direction distance location
polr1a polr1a coding upstream 4323 5974663 ~ 6028441 (+)
LOC120567500 NA coding upstream 31851 6000777 ~ 6000913 (+)
LOC120567495 NA coding upstream 37550 5995078 ~ 5995214 (+)
LOC120567493 NA coding upstream 42372 5990256 ~ 5990392 (+)
LOC120567494 NA coding upstream 44120 5988508 ~ 5988644 (+)
LOC120567168 LOC103373597 coding downstream 1478 6079087 ~ 6109155 (+)
cenpu NA coding downstream 33485 6111094 ~ 6123585 (+)
LOC120566943 NA coding downstream 78870 6156479 ~ 6168532 (+)
LOC120567385 LOC107574244 coding downstream 470318 6547927 ~ 6552607 (+)
trnaf-gaa_30 NA coding downstream 471120 6548729 ~ 6548801 (+)
G103631 NA non-coding upstream 112224 5917239 ~ 5920540 (+)
G103630 NA non-coding upstream 115900 5916553 ~ 5916864 (+)
G103620 NA non-coding upstream 137676 5894819 ~ 5895088 (+)
LOC120567187 NA non-coding upstream 169303 5861576 ~ 5863461 (+)
LOC120566355 NA non-coding upstream 226523 5805843 ~ 5806241 (+)
G103734 NA non-coding downstream 291256 6368865 ~ 6369190 (+)
G103739 NA non-coding downstream 404987 6482596 ~ 6482915 (+)
G103742 NA non-coding downstream 429257 6506866 ~ 6507167 (+)
trnaf-gaa_9 NA non-coding downstream 431927 6509536 ~ 6509608 (+)
trnaf-gaa_10 NA non-coding downstream 433577 6511186 ~ 6511258 (+)
G103305 NA other upstream 1963150 4068811 ~ 4069614 (+)
smad5 LOC103363483,LOC104920560,LOC103391130,LOC101064562 other upstream 2159931 3860635 ~ 3872833 (+)
G103034 NA other upstream 2517047 3514023 ~ 3515717 (+)
zgc:110843 cisd1 other upstream 2781133 3247545 ~ 3251631 (+)
mospd1 mospd1 other upstream 3143012 2885613 ~ 2889752 (+)
irf2 irf2 other downstream 100387 6177996 ~ 6190564 (+)
trnam-cau_9 NA other downstream 778573 6856182 ~ 6856254 (+)
G103836 NA other downstream 1544029 7621638 ~ 7643183 (+)
LOC120567362 NA other downstream 2261807 8339416 ~ 8346534 (+)
LOC120567404 LOC104951845 other downstream 2397007 8474616 ~ 8476449 (+)

Expression


Co-expression Network