popdc2 (popdc2)


Basic Information

Item Value
gene id popdc2
gene name popdc2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 26718505 ~ 26731164 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818084.1
ATCCCTTCTCTTCCAGCTGTTGGCTCTACAATGCAGGCCGGATGGGTGAGAGAAATAGACAGAAAAGCTACAGcaagagagacaacaggaagaCTCGGAAGGGAAAGACGGagtacagagagagggaggaagggacgCATAATGAGACAAGACGAAGAAACCCATTCCAGCTGTGTTTCTATAACAAATAGAGCCGTGAGAACTTCATATTGAAGAACTTTCCACTGCACGCCAAGGGAACAAACATTTACTTCTGACATTCTTCTGGCAGTATTAGTTTATTTTTGATCACAGAAAACATCTAGTTGTACATGTTGATGTGACAGAAATAGAAGCAAAGTTCATTGGATGAGAAGTTATTTGGTCCTCTCATTGTTTTGTGCATCAGAAAAAGTCTCTCCTCAGCTTGTCGTTTGAAGACAAACATGAGCACACACAACTCGACTCTGCTGGACAGcttgttttttccccctctctgcGATGGCTGGACCAACAACACAGAGGGAGCCATCTACCATTTGGGCAACACCATGCTGTTCCTGGGCTACATGGGAGGCAGCGGGGCCTACGGGTGTCTCTTCATCTTCGGCTTCCTGACTCCCGCCTTCGCGTTCATGAGCCTATGGGGTTGGCTAACGATGTGCAGCCTGGATGTCTTCGCCTGGAACCTGCTTCTGCTGCTGGCCTGCTTGGCTCAGATCTGCCACCTGCTTTATCGGCTGCACAAGGAGGGCATACGCAGTGAAGAACTGACCGCCCTCTACCAGGCGGTGTACCTGCCGCTGGGCGTGCCCGTCCAGGTGTTCAAGGAGATCGCCGGCGCCTTTGAGAACAAGGTGGTGGAGCTGAAGGCAGGAGAGATGTACGCTGTGGAGGGCAAGACGCCAATCGACCGGCTCTCCTTTCTGCTGTCTGGGAGgatcAATGTATCTTTGGAGGGACAGTTCCTGCATTACATCCACCACCACCAGTTCCTCGACTCTCCGGAGTGGGAGTCTCTCAGACCAAACGAGGAGGGAAAGTTCCAGGTGACCATGACAGCAGAGGAAGACTCCCGCTACATCTCATGGCGTCGCCGCCGCCTCTATTTGGTGATGTCAAAGGAGCGTTACATCGCCCGTGTCTTCTCCGTCATGCTGGGCTACGACATCGCCGAGAAGCTCTACAACCTCAACAACAAGCTCTACATCAAGAGTGGCGTGCTGTTGGACATCCGCCTGCCCAGCCTCTACCACGTGCTGGCCCCCTCCTCGCAGGGCAGCGAGGGCGGCAGCGGTAGCGGCAGTGACGGGGGCATTGGCAAGGAGCATCCACACGGTGAAGACCCGGCACCGGCCTACCAGATGTCCGATCCAGCCCAGTTTCAACCCCACCTGCAGGGACCAAGGCACCCCACCCTGGATGAACACCAGGCCCCCCAGCATGACCGCTATCAGCACCCCTGGGCGTCAGATGGCGAGCTGCCCACTGGTGAGGACTCCACCAGCCTGGTCCTGGAGGACTTTGCTGATGTGGCGGGCTCCTTAACTGATTATGGCAGTGAGAGGGATTATTTGAGGTAGAGGGAAGGGTGATGGAGCTAACACACTGGGTCACCACTTAAGCTACATGAGGTGATAGTGACGGGGATCTACCACCTCGATTCCAGAGGGGCAGAGCGCCGCTGGCTCCCACCGACACTCCCAAACTGTGAGAACAGTCTCTCCTGGAAACCGTATATTATATCATTTACTGTATAGCAGTATGATTGTGTCACAGATCAATTGTTATGTCTCCTTCTCACTCTGTTGCTGTTCTCGCTTCACTTCACTCATCTTTAGTCCTGAGCATGAAGActctttgtttttctctatTTAAATTGCAGTTTCAGTGATGAGGCAGCTAATATTGATATCTTTCAACAATCAATACTGTTGGGGCTGATGTTTATCACCATAATGACTTCAATTCATTGAACGCCCACAAACTACAAGTGCTTTGTGTTGCCTAAAAGTTTTCGTGTCAAGATTTAAAGTCTCTGAAGCAGCATTCAGGCCACCAAATCTGCCTTAAAATCCTAAAGACAGGGGGACCCACCACATTTATTCAACTTTAGTAAAACTTGTAGATGTTTTAGCATTTCAATGAACATGGCATTTACAAAATCTATAATTCAACAACTGAGCGAACCAATAAGATGCTCAAAGAACATTtatattgtgtgtttatttaactgCAGGGATTCATTAAAGAAGGACATGTTGACTTGCAGATAAACTGTATCCAACATTTAATAAACTGTCCACAATCTGAATTAAATCCTAATTACACCATGATCTTAAGTGGCACTGAAACACTACGGACAGAGGGACAGCCTTCACCTTACCAGCATGTTAAAAGTCTGAAATGGTATTTTTATGTAATAAAAATGGATTCTGTGATACTGAAACAGATGAATTTGGTTTTCATCCCACTTATATTTGATGTTAGAACTCTGACTGTTTGATTTGGACTTCACGTGATTGAATGTTAATTTTTgacgtttgtttttttcacaactcATACTCAGTGTTACAAAGAGTATTGATTTAACTTAGTACGATTACACATTTTCTGGATCTGACTGATTTGAACAGACCTGCATTATACCCAATTCTTAATCCTTTCAAGATCTGGAAAATATTTAGTTTTGCATACTTCCTGAGAACTTTCCAGACATGTGTATGAacatttacaaaatgtacaaaaccTGCAACTTGGCAGTTTAGAtttcatgtttagtttatttatctgAATGCACCATTGATGCCAATTTCATTTGGAGGACAACCTCTTCTTCCTTTGTAACTGAGAATTGAATACACACATGTACGTATACTGTGAATTCCATTATTTGTCCCGTTACTGCTTTGCTAAATTACAAAATGGGATTAAAATGATGAAgtcagtgtttttaaaaagtattttcatGGGCCAAGATTTCTCCATAAAGCTCTTTGTGTGCAGTGAAAA
>XM_039818085.1
ATCCCTTCTCTTCCAGCTGTTGGCTCTACAATGCAGGCCGGATGGGTGAGAGAAATAGACAGAAAAGCTACAGcaagagagacaacaggaagaCTCGGAAGGGAAAGACGGagtacagagagagggaggaagggacgCATAATGAGACAAGACGAAGAAACCCATTCCAGCTGTGTTTCTATAACAAATAGAGCCGTGAGAACTTCATATTGAAGAACTTTCCACTGCACGCCAAGGGAACAAACATTTACTTCTGACATTCTTCTGGCAGTATTAGTTTATTTTTGATCACAGAAAACATCTAGTTGTACATGTTGATGTGACAGAAATAGAAGCAAAGTTCATTGGATGAGAAGTTATTTGGTCCTCTCATTGTTTTGTGCATCAGAAAAAGTCTCTCCTCAGCTTGTCGTTTGAAGACAAACATGAGCACACACAACTCGACTCTGCTGGACAGcttgttttttccccctctctgcGATGGCTGGACCAACAACACAGAGGGAGCCATCTACCATTTGGGCAACACCATGCTGTTCCTGGGCTACATGGGAGGCAGCGGGGCCTACGGGTGTCTCTTCATCTTCGGCTTCCTGACTCCCGCCTTCGCGTTCATGAGCCTATGGGGTTGGCTAACGATGTGCAGCCTGGATGTCTTCGCCTGGAACCTGCTTCTGCTGCTGGCCTGCTTGGCTCAGATCTGCCACCTGCTTTATCGGCTGCACAAGGAGGGCATACGCAGTGAAGAACTGACCGCCCTCTACCAGGCGGTGTACCTGCCGCTGGGCGTGCCCGTCCAGGTGTTCAAGGAGATCGCCGGCGCCTTTGAGAACAAGGTGGTGGAGCTGAAGGCAGGAGAGATGTACGCTGTGGAGGGCAAGACGCCAATCGACCGGCTCTCCTTTCTGCTGTCTGGGAGgatcAATGTATCTTTGGAGGGACAGTTCCTGCATTACATCCACCACCACCAGTTCCTCGACTCTCCGGAGTGGGAGTCTCTCAGACCAAACGAGGAGGGAAAGTTCCAGGTGACCATGACAGCAGAGGAAGACTCCCGCTACATCTCATGGCGTCGCCGCCGCCTCTATTTGGTGATGTCAAAGGAGCGTTACATCGCCCGTGTCTTCTCCGTCATGCTGGGCTACGACATCGCCGAGAAGCTCTACAACCTCAACAACAAGCTCTACATCAAGAGTGGCGTGCTGTTGGACATCCGCCTGCCCAGCCTCTACCACGTGCTGGCCCCCTCCTCGCAGGGCAGCGAGGGCGGCAGCGGTAGCGGCAGTGACGGGGGCATTGGCAAGGAGCATCCACACGGTGAAGACCCGGCACCGGCCTACCAGATGTCCGATCCAGCCCAGTTTCAACCCCACCTGCAGGGACCAAGGCACCCCACCCTGGATGAACACCAGGCCCCCCAGCATGACCGCTATCAGCACCCCTGGGCGTCAGATGGCGAGCTGCCCACTGGAGGTGATAGTGACGGGGATCTACCACCTCGATTCCAGAGGGGCAGAGCGCCGCTGGCTCCCACCGACACTCCCAAACTGTGAGAACAGTCTCTCCTGGAAACCGTATATTATATCATTTACTGTATAGCAGTATGATTGTGTCACAGATCAATTGTTATGTCTCCTTCTCACTCTGTTGCTGTTCTCGCTTCACTTCACTCATCTTTAGTCCTGAGCATGAAGActctttgtttttctctatTTAAATTGCAGTTTCAGTGATGAGGCAGCTAATATTGATATCTTTCAACAATCAATACTGTTGGGGCTGATGTTTATCACCATAATGACTTCAATTCATTGAACGCCCACAAACTACAAGTGCTTTGTGTTGCCTAAAAGTTTTCGTGTCAAGATTTAAAGTCTCTGAAGCAGCATTCAGGCCACCAAATCTGCCTTAAAATCCTAAAGACAGGGGGACCCACCACATTTATTCAACTTTAGTAAAACTTGTAGATGTTTTAGCATTTCAATGAACATGGCATTTACAAAATCTATAATTCAACAACTGAGCGAACCAATAAGATGCTCAAAGAACATTtatattgtgtgtttatttaactgCAGGGATTCATTAAAGAAGGACATGTTGACTTGCAGATAAACTGTATCCAACATTTAATAAACTGTCCACAATCTGAATTAAATCCTAATTACACCATGATCTTAAGTGGCACTGAAACACTACGGACAGAGGGACAGCCTTCACCTTACCAGCATGTTAAAAGTCTGAAATGGTATTTTTATGTAATAAAAATGGATTCTGTGATACTGAAACAGATGAATTTGGTTTTCATCCCACTTATATTTGATGTTAGAACTCTGACTGTTTGATTTGGACTTCACGTGATTGAATGTTAATTTTTgacgtttgtttttttcacaactcATACTCAGTGTTACAAAGAGTATTGATTTAACTTAGTACGATTACACATTTTCTGGATCTGACTGATTTGAACAGACCTGCATTATACCCAATTCTTAATCCTTTCAAGATCTGGAAAATATTTAGTTTTGCATACTTCCTGAGAACTTTCCAGACATGTGTATGAacatttacaaaatgtacaaaaccTGCAACTTGGCAGTTTAGAtttcatgtttagtttatttatctgAATGCACCATTGATGCCAATTTCATTTGGAGGACAACCTCTTCTTCCTTTGTAACTGAGAATTGAATACACACATGTACGTATACTGTGAATTCCATTATTTGTCCCGTTACTGCTTTGCTAAATTACAAAATGGGATTAAAATGATGAAgtcagtgtttttaaaaagtattttcatGGGCCAAGATTTCTCCATAAAGCTCTTTGTGTGCAGTGAAAA

Function

symbol description
popdc2 Predicted to enable cAMP binding activity. Acts upstream of or within cardiac conduction; heart looping; and striated muscle cell differentiation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in sarcolemma. Is expressed in heart rudiment; musculature system; pectoral fin bud; pericardial region; and somite. Orthologous to human POPDC2 (popeye domain containing 2).

NR:

description
popeye domain-containing 2-like isoform X2

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818084.1 True 2991 mRNA 0.46 4 26718505 26731164
XM_039818085.1 False 2851 mRNA 0.46 4 26718505 26731164

Neighbor

gene id symbol gene type direction distance location
il17d il17d coding upstream 153253 26561022 ~ 26565252 (+)
ift88 ift88 coding upstream 157624 26535953 ~ 26560881 (+)
ttf2 ttf2,LOC105900813,LOC105419959 coding upstream 307744 26396070 ~ 26410761 (+)
rnf17 NA coding upstream 344601 26314786 ~ 26373904 (+)
LOC120569747 NA coding upstream 591394 26099440 ~ 26127111 (+)
wars2 wars2,LOC102792775 coding downstream 100829 26831993 ~ 26860003 (+)
tbx15 tbx15 coding downstream 136031 26867195 ~ 26907517 (+)
gdap2 gdap2 coding downstream 357831 27088995 ~ 27119350 (+)
LOC120569540 LOC100689803 coding downstream 849914 27581078 ~ 27587589 (+)
LOC120570327 cntnap5 coding downstream 1073761 27804925 ~ 27910727 (+)
G127336 lats2 non-coding upstream 58184 26659538 ~ 26660321 (+)
G127333 LOC107712271,LOC107597418,LOC107724484,LOC107569193,LOC107658249 non-coding upstream 75855 26642315 ~ 26642650 (+)
G127332 lats2 non-coding upstream 78045 26636231 ~ 26640460 (+)
G127270 NA non-coding upstream 200217 26510175 ~ 26518288 (+)
G127273 NA non-coding upstream 212962 26503559 ~ 26505543 (+)
G127361 NA non-coding downstream 5402 26736566 ~ 26743198 (+)
G127366 NA non-coding downstream 26143 26757307 ~ 26761690 (+)
G127376 NA non-coding downstream 47130 26778294 ~ 26779081 (+)
G127414 NA non-coding downstream 393872 27125036 ~ 27126371 (+)
G127415 NA non-coding downstream 395314 27126478 ~ 27127406 (+)
LOC120569906 NA other upstream 1108 26713350 ~ 26717397 (+)
zmym2 zmym2 other upstream 234417 26449443 ~ 26484088 (+)
mphosph8 mphosph8 other upstream 279220 26411477 ~ 26439285 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other upstream 588626 26116988 ~ 26129879 (+)
cacnb4a cacnb4 other upstream 1054078 25630107 ~ 25664427 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other downstream 1657479 28388643 ~ 28409839 (+)
G127814 itgb5 other downstream 2297738 29028902 ~ 29041224 (+)
LOC120569952 LOC103367759,LOC104957842,LOC103482036,LOC106947595,LOC102235455,LOC102799479,LOC101465930,LOC102199775 other downstream 2565320 29296484 ~ 29299361 (+)
G127932 LOC103367765,LOC102202048,LOC100700231 other downstream 2727980 29459144 ~ 29459978 (+)
G127935 LOC103149918,LOC106933234,LOC104960782,LOC104932527,LOC108238793,LOC103482149,LOC105920790 other downstream 2735980 29467144 ~ 29474550 (+)

Expression


Co-expression Network