nr0b1 (nr0b1,LOC103362601)


Basic Information

Item Value
gene id nr0b1
gene name nr0b1,LOC103362601
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 21883581 ~ 21885428 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818510.1
GCGGAGTATGCAGACTGTCTGAACAAGCGTGGGGACAGACAGGAGCTAATATAAACGTGCTGTCCTTCACTCGGGGCTACCAGAGGCTAAGAAAACAGCGCTACCTCTGCCACACTGACCTCCGGCGCTTCCAAGAGACAGCGGAACTCTGGCCCATGTAGAGCGGCCATGGCCACGCTGGAGGGCTGCCGCTGTCGAAACAACAACAGCATCCTCTACAGCATTTTGAAGAGTGACAGCCTTGCGACCGCCGaggagcaacaacaacaacaacaacaacaacaacaacaacaaccaccacaacaaccacaacaacaacatcccCAACAACAAACATTGCAACACTTGCTCCACAAGACCTCGTCCACCGCCGCCCCAGGCTCGCTGCAGGAGCTCCGGCAGCAGGCTTGTTCCTGCGGATCGACGCGGCGCAGAGGTATCCTCCGCTCTCCGCAGGTGACGTGCAAAGCCGCCTCGGCGGTTCTGGTGAAGACGCTGCGGTTCGTGAAAAACGTCCCCTGTTTTCGTGAGCTGCCGGAGGACGACCAGCTGACGTTGATCCGGAGCGGCTGGGCGCCACTGCTCGTGCTGGGTCTCGCGCAAGACCGGGTGGACTTTGAGACCACGGAGACCGTGGAGCCCAGCATGCTGCAGCGCATCCTCACGGGTCTGCCGGACAGGCAGAGCGAAGTGCTGGCCGGCCAGAGCAGGGGGGCAGCCGGGGTCTCTGTCGTGGATATCGAAGCTATCAAAGCCTTCCTGAAGAAGTGCTGGAGTGTAGATATCAGTACGAAGGAGTATGCGTATCTGAAAGGAGCTGTGCTGTTCAACCCAGATGTGGAGGGTTTGCGCTGTCTCCACTACATCCAGTCTCTGCGTCGGGAGGCGCACCAGGCTCTGAACGAGCACGTCAGGCTGATCCACCGTGAGGACACGACGCGGTTCGCCAAACTGCTCATAGCTCTGTCCATGCTGAGGGCCATCAGCCCGCCGGTGGTCGCGCAACTCTTCTTCAGACCCGTTATAGGGGCCGTCAGTATTGAGGAGGTACTCATGGAGATGTTCTACGGGAAGTAGGTCACAGTCCATAGTGGACTGGGGTGAATTCAGCACATTCCGCTGCTAGATGGACTGAATGGCTCCAAAGGTCGTACTGGGTAGGAGGTTAGGGCAGATGAAGAGAGGATATTAGGGACTGAATTTACAACTACTGTTTGTGGGAGATCTTCAAGGACTGTGAAATGACCAACACAGgcaacacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgggtatATATGTGTGCGCACGTGTATGCatgagagaaagtgtgtgttgaAGGCAAGAGATGTtaagaaaaagacaaagcagCTGATGGAATTAATaacttatttgtttttatacaaa

Function

symbol description
nr0b1 Predicted to enable transcription corepressor activity. Acts upstream of or within negative regulation of male gonad development and water homeostasis. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; digestive system; fin; interrenal primordium; and reproductive system. Human ortholog(s) of this gene implicated in 46,XY sex reversal 2 and X-linked adrenal hypoplasia congenita. Orthologous to human NR0B1 (nuclear receptor subfamily 0 group B member 1).

NR:

description
PREDICTED: nuclear receptor subfamily 0 group B member 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG:

id description
K08562 NR0B1, DAX1; nuclear receptor subfamily 0 group B member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818510.1 True 1425 mRNA 0.55 2 21883581 21885428

Neighbor

gene id symbol gene type direction distance location
LOC120570102 LOC103362603,LOC104951867 coding upstream 20556 21861260 ~ 21863025 (+)
rnaseh2b rnaseh2b coding upstream 29080 21848651 ~ 21854501 (+)
trim13 trim13 coding upstream 73669 21793274 ~ 21809912 (+)
phf11 NA coding upstream 128055 21743748 ~ 21755526 (+)
mcf2lb LOC100707473,LOC101480000,LOC102199374,LOC103372300 coding upstream 141346 21692221 ~ 21742235 (+)
cmss1 cmss1 coding downstream 341604 22227032 ~ 22268448 (+)
tmem30c LOC104964416 coding downstream 383412 22268840 ~ 22272623 (+)
col8a1a col8a1 coding downstream 430672 22316100 ~ 22329632 (+)
jagn1a LOC104964438,LOC103371888,LOC106923881,LOC103134718 coding downstream 445072 22330500 ~ 22332801 (+)
tfg tfg coding downstream 447477 22332905 ~ 22350059 (+)
G126000 NA non-coding upstream 401556 21479929 ~ 21482025 (+)
G125994 txndc9 non-coding upstream 406831 21473163 ~ 21476750 (+)
G125992 mitd1,LOC102785871 non-coding upstream 415449 21465910 ~ 21468132 (+)
G125958 NA non-coding upstream 473616 21409192 ~ 21409965 (+)
G125957 NA non-coding upstream 474468 21407513 ~ 21409113 (+)
G126160 LOC103371890 non-coding downstream 465599 22351027 ~ 22352358 (+)
G126162 LOC103371890 non-coding downstream 470666 22356094 ~ 22357669 (+)
G126169 NA non-coding downstream 500101 22385529 ~ 22385754 (+)
G126175 NA non-coding downstream 559900 22445328 ~ 22446121 (+)
G126246 NA non-coding downstream 649703 22535131 ~ 22537513 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 191777 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 248824 21619348 ~ 21634757 (+)
G125757 rpl24 other upstream 1018139 20860152 ~ 20865442 (+)
mpc2b mpc2 other upstream 1024665 20853089 ~ 20858916 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 1362307 20492178 ~ 20521274 (+)
fbxl3a fbxl3 other downstream 845495 22730923 ~ 22738653 (+)
G126363 lmo7 other downstream 921765 22807193 ~ 22815102 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other downstream 1093174 22978602 ~ 23100083 (+)
cwc22 cwc22 other downstream 2298521 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 2391729 24277157 ~ 24298218 (+)

Expression


Co-expression Network