G23911


Basic Information

Item Value
gene id G23911
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44812153 ~ 44816376 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU32274
ttaaattacattacatctatAATGACAGCAGGCCTAAGCAAAAAGGATTAAGACATACAAACAAgtgacacacaaacaagcatgcacaaACAATTAAGCACAGATGATAGCAAAGGCATTAAAGCAGTCCATGCagtaaaaacaatacaaaggAGACGAGAGAAAGGAGTCACAGAGGCCACATTAAAAGCACATACAAGACATAACATGGAGGCAGGCAGCAGAGATggaacagcagcaacaatgactgtttacatttatttatttatttgtttaattaaaagggacaatgcacatcaattgacattttttgtttacaCTCAAAATGTTATCATGCCAGTTAGCAAaaaagctaattttcatctgtagtcccttgGCAGGTCAACACCTTTCAATGCAAGAAAGATAGAaagcaaattaaaaaagaagataaaagagagaatatatgagaaaaataaataagtacaaTACAAAGAAGGGCAGTACCTAGGATGAGGTAgctcaggggtcaccaacacggtgcccgtgggcaccaggtagcccccaaggaccacatgagtagccctcaggcctgttctaaaaatgaaaattgaatattgatattatctgtttcccaccttggtaagtcattgttgataattattgtgagaaatcattaacatgatcagtgtcttcgcatagatgagtatcatttatcattaataatcatatataactaaaggcaaactgagcaaatttgttatttcagaagagtgtatcaaactggtagcccttcgtatgactccataccaaggggggtaagcttcgcttcagaactcgagccatcatggcgccattttgttgctaactggccatcacctcctgttagcattccgctgaccgccattttttttttacgtcacttgactgcgaataactttacatccgaagcgtttaaagactcgatttgtccattgtttagttctaaagaaacacgacaacgtataaaaggctccattaccttgtatctcacgttatggctccgtagcagacgtttttataaaaataggctaacgattgtgtcataacaaagtgacttactgtcgcacagtagaggaattaccgtatagtacaggagaagctcgcaggcagtttcgacttacgttagctgtttaggtttaattactaatgttaactagcatgttagttagcaataattagcctgtgcctatgttatctccttacatatacctacactctccatctctgtaagattgggaatgattgagatttctctcggcacagctaccagaagacttcacactttcagacaggttgctcacgtcacatttacgttgtatctctcagttggaggctgcgcagtaaagcaagagatcaccggaaaagtgcttctaatagccttcactggtctccgtccagagcagcgggctctgttggtccattatatatatgtcaatgctccATACcgatgaagtagctctcagtttcataaaggttggtgacccctgtaGCTAAACAAGCTATTGATGATTGcagttttgattgtttttaatcccatgcacataatattccggcaaagacgatattccgactaagctgtttacatggctaatgaaagtgaatattccacatAATATTCTCATTTACGTCTAGCGCCgcaaaacaggatttttttcaaagtttaacaGCGGTGGctgacttgttggaccgtgcaaacacagcgtccctctttcattccttcaaccagcgtCTTGAAAAGATTGGCGTAGCGATGTTTACGTATATTCAAAAACCtattgatatccaagtctttgataatgtttaaaagtagctgtgtttctccttatcGGGTctccagccttgcaaactgttggctggttggtttgtgtacagaaaccatagcaacgcacggagctgaccataagcctgcGGTGAGAACcccgattgagacgcatattccgaatgcactgtatacatgtccaaaaaatgtttcttaaacctgaataagtaagggttaatgcccgacgaggtgtccattgtcaggtattaatggacgacggcgaggcgtgaaccgtccgacgcgcagCCGAAGTCCATtactacctgacaatggacacctcgaagggcattaacccgcttataccatggtcacttgccaaataacatatttttaaaacattagttcatattttaattagttttacaatcgaaatctaaagtttatccaaacaataactccgttacgcctgacggtttgactaatacctggaacaatcattcccatccatcagattcttatgcaatgcaaacattgttctctccaccaggaattaggaagaaccttagatacgacttgcctcccttagcaaccggagatatttatatagtccgctcagctgatagaacccttcagtttagctatgagccagaaagctaacgctatgctagcaagatccaaagtcaataacattgtgtacagttggcaatcagtaaaaataatttgacagtatgttgaacaacaagacaagctagctatccagccatgtcattgtccccaaaacaatataacgacttttacgaagaatttgatccgcgatgtgtaacgttgctGTTGGCttcagcggcgcagcctgaagcagcgagctgagatATGTGaaataacgttattcgctgtgaaactgagtcagtccagagggccagtagaacttacttcttgcagcctgtgtgttttagcgccatcctgtggtgttcagaggacgatttggaaataataaatccacatttccttattgattttaatgtagcgcattcatttagaacagtaaacagtcagtttcaccgaactcctttagtaggtgtcctacatcactttttaatggacaccctgcagccaatcagaatcgagtattcacccagaccatggtataataccggaatatcccacgtcttaatcggaaaatgctatattcggaaaaaggtctttttcggaataaacaaccagaatatgctgtttacatgacctgtatcaaaatcggaatattgtcatattcggaataatagtggaatattggtgtgcatgtaaacgtactgagTGACTATGTCACATCAAACACATATCACGTCTGACAGATTAATGTGTGCAGTTATAGTTATCGGACAGCCATGTTTTAAGGTGTGTTGTAAAGTggaatatgtatatatatatatatatatatatatatatatatagtattgtaTTTGCATTTGCTGATATCTGTCTTATACATTTGAGCCCACTTTAGAAAAAGTTTTTAATAAAAACTCTGAAATAATTTGGTGGAAGATTTTTCCCCTATCATAAAATTTCCCTTGATCACTTAACAGATACTTCTGTTCAGAAAATAAGGTGAAATTTAAAACAAGGATTATAATATCATCAAGTCTATTTTCAAATCCTTCCCCACACCCCCATTTTCAGATTGGAATGTGTTCCCAGTTAAGGGGTGATGCTTACACTCAGACAACAAAGGGGCAGAGAACAAACCTGTTCCATGTCTTGATGAGGCATGGCCTGTCATGTCTCCTTGATGGAAGTAATTGTGCCTTCTCAGTCTTCATTAGCAGACTTTCTTGCTGAGTAAAACATAGATTTTTGCTGTCTTGTTCCAGTCCGAAATGCGTATGTAATATCTTGATATATCCCTCTTTGCTGAAATGTGGTTTTCCATTAAATGTAGCATAAATATGAACCATCTTCAAATTGCATTATTAAGTACCATCCAGGTGTTTTTTTAAGCCCATATCAGCTGATCAACATTAGTGGGATTGGTGCTCGTGAGTCCATGGTGGCTGCACTGTTCTGAGAGTTAAATGTATCCAGGGCCAGTATGTATAAAGCTGCTCGGTGATGAGTTCAGAGAGCTCCAGAATGACCAGCAGATGGAAGCATTACTGCACAGAGGGAGAGGACGTGCTTTCTTCACAGCACAGGAACATGGAAAATGGATGATAAATTGATTAATAACATGATGAATTTAACATTGATATAATCAAatgtgatagaatgattattcTTAATGCTCATATTATCCACCTGTATTTATTATGCAAATGTGCAATAATAGTTATAATGGCAGGGCTGTGAAGAAGTGGGAGCAAGATCAAGAATggataagaaagaaaaaatataatggTCTTATGCATGTATAAACCTGCcgaaatacacattaaatacaaaGTTTTAGG

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000245 spliceosomal complex assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32274 True 4224 lncRNA 0.45 1 44812153 44816376

Neighbor

gene id symbol gene type direction distance location
LOC120551889 NA coding downstream 72720 44737861 ~ 44739433 (-)
LOC120574575 NA coding downstream 698082 44098963 ~ 44114071 (-)
LOC120574562 NA coding downstream 713680 44094848 ~ 44098473 (-)
omgb omg coding downstream 724902 44083085 ~ 44087251 (-)
LOC120570616 LOC104946633,LOC103355253,LOC102792009,LOC102302768,LOC102198488 coding downstream 1233742 43566580 ~ 43578411 (-)
trnah-gug NA coding upstream 94451 44910827 ~ 44910898 (-)
trnar-acg_1 NA coding upstream 95480 44911856 ~ 44911928 (-)
trnah-gug_1 NA coding upstream 95779 44912155 ~ 44912226 (-)
trnar-acg_2 NA coding upstream 96815 44913191 ~ 44913263 (-)
trnar-acg_3 NA coding upstream 98135 44914511 ~ 44914583 (-)
G23912 NA non-coding downstream 6114 44805798 ~ 44806039 (-)
G23906 NA non-coding downstream 37714 44774205 ~ 44774439 (-)
G23811 NA non-coding downstream 585614 44222212 ~ 44226539 (-)
G23799 NA non-coding downstream 674401 44137372 ~ 44137752 (-)
G23759 NA non-coding downstream 988738 43823067 ~ 43823415 (-)
LOC120549067 NA non-coding upstream 49754 44866130 ~ 44880509 (-)
LOC120549064 NA non-coding upstream 64294 44880670 ~ 44884338 (-)
G23949 NA non-coding upstream 149363 44965739 ~ 44965970 (-)
G23964 NA non-coding upstream 182601 44998977 ~ 44999217 (-)
G23977 NA non-coding upstream 187058 45003434 ~ 45005501 (-)
smco4 NA other downstream 1022718 43770066 ~ 43789435 (-)
LOC120553425 NA other downstream 1095412 43700971 ~ 43716741 (-)
LOC120574039 nlk,nlk2 other downstream 1465480 43236682 ~ 43346673 (-)
cntn5 NA other downstream 2645116 42029673 ~ 42167037 (-)
cadm2b cadm2,LOC100695412,LOC103378151,LOC106520568,LOC102793287 other downstream 4341977 40290005 ~ 40470176 (-)
mrps23 mrps23 other upstream 252 44816628 ~ 44824993 (-)
bet1l bet1l other upstream 2318478 47134854 ~ 47142596 (-)
dhx34 dhx34,LOC102778731 other upstream 2479178 47295554 ~ 47325453 (-)
nectin1b nectin1,LOC102782356 other upstream 3340977 48157353 ~ 48398620 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009934 si:dkey-29h14.10 coding NC_007127.7 CM002900.2 25285998 ~ 25295185 (+)