LOC120571231


Basic Information

Item Value
gene id LOC120571231
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 11028799 ~ 11067603 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU178469
gcctaatattacaagaataaacTTTTTGTTGCCGACAACAACTAGGCTAATGATATACAATATCTTAATTCGGGGCTACAAtaaaaacattcggggctgaagccctTCAAAAATGACCTGGTTAATATTGGTGCACATGACTATTTAGACTGACCCACATTGCCCTCTAGTGGCGTGTAGTCGTATTTCGGCAGACAGTCTGTTTTCGGCACAACACCGGCCCAcccaaaatactatttctgcCTGTGCCactgcttctttttcttttgacatgctatactatgaataTTTTTCACTCTTTCCAACATAGGCTActataattacttttttaaacttttctcgacatactattctatgaattatttagcacttcttttgacatactatactatgacttttttcgacgtgctatactatgaatatttttcattcttttcaacatactatactatgactgttttaacccttgttttaacatactatggtatgactttttttatcactttttttcaacatactatactatgactttttttaatcacttttttcgacatactatactatgaatgttTTCAAAACATCATTATTGGTGACATGGTGGCTCTATGGTTAGCACAGCTCCAAATAACATCAGCAAGTAGGCACTGCAGACTCTGACCTTGGTTCAAACCCCAGTCTGGGCTGGacatttctgtgtggagtttgcatgttcttccagactttctttgacatactacactatgactttttttattcacttttcgacatgctataccatgactttttttcgacatactaaactatgacttttttataatttttttcgacctactatactatgggttTCTTCCCcattttttcaatatactacactatgactgttttcgacatgctatactatgactattattcacttttttcgacatactatactatgactttttatcacttttttcgacatactatttatggctttttcaacatactatagtatggcttTCATGAAAACACTATACTATACTTTCGGATTGCTTGTGGCTTGGATGTAGAATGTTTGTCCCATAACCAGGAGGGTTGTGGATAAATCCCACGGTCCTTCAGCAACATGTCAAAGTATAGTAGTAAgtttttttatgatgtttttcaacgtactattactatggcttttttcgacatactatactatggcttttttatcacgtttttcagcatactatattatgacctttttatcacttttttcgacattctatactatgccctgtttcgacaaactatactgtgacttttttattactatgtttttttcaaaaatcatACTAATCGAAACCAatcccacttttccaactattttcacttcttcaccttcttcttcacTTTTtagcattcacaagcattttctgcaggaaatgcattttctagttggcGCTTTTCTTGCTTTGATATTAAATGCACTTAGTTATTTCCCACCCCTGGTGTTTGTGTACAGTACGTGAGAGTATACATACTCTCACGTACTGCACTAGCTGCGACGCCCTCCCCTACAACAGGGCGATCTAATTAAATCCCGTCACGCGCTGCCCATTTGCTCAGGCACACCTGCACCCTCAGCCCTAattaatgctgctgctgttcatACCTGTATTGCCGTCCATAAGCTAGCTCGACTTCTAGCATGTCCATGTTTCTTCAGGACGTTTTTGTGGAGGAATTAACCGTGTTTACACAGTGCTGACAGCTGTTGCCCGTGTTCAGACTCCGTTTTTCGGTTGTTGCTCACATCAGCTGTGAACCACAAAAACGCACTTCCTGGCAGAAGTGGAGTTCTCCTGTCCATTTCAGTGACCGACTCTGTAAAAGTCCATTCTTCTCACAGCGTCACTTCACCAAGaAATGCGTGAAATCTAAGGTTCAGTTTCAAGAGGCCACAACAGAAAACTAACCAGTCTTCAAGAATTGTGGAAAACAAGGAATGCAGACAGTCTCATGGATTCAAAAGAAGCTTAAGGTGAAACATCATGCAAAATCTGTTTGACCTTCAGTATTAAAAGGAGAAAATGAGGATCCAACACAGACTGTGCTGCTGGATGGCCATAGGTGGAGGCAGAGGTACTGAGTCAGCGCCCGTCACCCCCTCCTCCTCGCCGCAGCTCCACATGCCCGAAGAATTCAACTTTTTAAAGGTCTCGTCTCGGAATTGACCGCATTTTTACTCTGTCTTGTCTCGGTCTTAGATAAAGAGGActttatttcaagaccggtcaagaccacaactgccttTTTGATTTTTATCAAGGCATTTCTCATAATACACTTTTGGCAATAAAAGCGGTGAATGAAGAAGaatcttaa
>TU178470
gcctaatattacaagaataaacTTTTTGTTGCCGACAACAACTAGGCTAATGATATACAATATCTTAATTCGGGGCTACAAtaaaaacattcggggctgaagccctTCAAAAATGACCTGGTTAATATTGGTGCACATGACTATTTAGACTGACCCACATTGCCCTCTAGTGGCGTGTAGTCGTATTTCGGCAGACAGTCTGTTTTCGGCACAACACCGGCCCAcccaaaatactatttctgcCTGTGCCactgcttctttttcttttgacatgctatactatgaataTTTTTCACTCTTTCCAACATAGGCTActataattacttttttaaacttttctcgacatactattctatgaattatttagcacttcttttgacatactatactatgacttttttcgacgtgctatactatgaatatttttcattcttttcaacatactatactatgactgttttaacccttgttttaacatactatggtatgactttttttatcactttttttcaacatactatactatgactttttttaatcacttttttcgacatactatactatgaatgttTTCAAAACATCATTATTGGTGACATGGTGGCTCTATGGTTAGCACAGCTCCAAATAACATCAGCAAGTAGGCACTGCAGACTCTGACCTTGGTTCAAACCCCAGTCTGGGCTGGacatttctgtgtggagtttgcatgttcttccagactttctttgacatactacactatgactttttttattcacttttcgacatgctataccatgactttttttcgacatactaaactatgacttttttataatttttttcgacctactatactatgggttTCTTCCCcattttttcaatatactacactatgactgttttcgacatgctatactatgactattattcacttttttcgacatactatactatgactttttatcacttttttcgacatactatttatggctttttcaacatactatagtatggcttTCATGAAAACACTATACTATACTTTCGGATTGCTTGTGGCTTGGATGTAGAATGTTTGTCCCATAACCAGGAGGGTTGTGGATAAATCCCACGGTCCTTCAGCAACATGTCAAAGTATAGTAGTAAgtttttttatgatgtttttcaacgtactattactatggcttttttcgacatactatactatggcttttttatcacgtttttcagcatactatattatgacctttttatcacttttttcgacattctatactatgccctgtttcgacaaactatactgtgacttttttattactatgtttttttcaaaaatcatACTAATCGAAACCAatcccacttttccaactattttcacttcttcaccttcttcttcacTTTTtagcattcacaagcattttctgcaggaaatgcattttctagttggcGCTTTTCTTGCTTTGATATTAAATGCACTTAGTTATTTCCCACCCCTGGTGTTTGTGTACAGTACGTGAGAGTATACATACTCTCACGTACTGCACTAGCTGCGACGCCCTCCCCTACAACAGGGCGATCTAATTAAATCCCGTCACGCGCTGCCCATTTGCTCAGGCACACCTGCACCCTCAGCCCTAattaatgctgctgctgttcatACCTGTATTGCCGTCCATAAGCTAGCTCGACTTCTAGCATGTCCATGTTTCTTCAGGACGTTTTTGTGGAGGAATTAACCGTGTTTACACAGTGCTGACAGCTGTTGCCCGTGTTCAGACTCCGTTTTTCGGTTGTTGCTCACATCAGCTGTGAACCACAAAAACGCACTTCCTGGCAGAAGTGGAGTTCTCCTGTCCATTTCAGTGACCGACTCTGTAAAAGTCCATTCTTCTCACAGCGTCACTTCACCAAGaAATGCGTGAAATCTAAGGTTCAGTTTCAAGAGGCCACAACAGAAAACTAACCAGTCTTCAAGAATTGTGGAAAACAAGGAATGCAGACAGTCTCATGGATTCAAAAGAAGCTTAAGGTGAAACATCATGCAAAATCTGTTTGACCTTCAGTATTAAAAGGAGAAAATGAGGATCCAACACAGACTGTGCTGCTGGATGGCCATAGGTGGAGGCAGAGGTACTGAGTCAGCGCCCTCCTCGCCCTCCTCCTCGCCGCAGCTCTGCATGCCCGAAGAACTCGACTTGGACAACGTGCCGCTCGACAAGCCCTCGTTACGAACCCTCTGCGGCACACACGGATGGCACAGTAGAGATTACATCACATGACTTTACACATCTGCTAAACGGAGAGAGGGCAAACATTGTTAATTGTGTAGTATCGTGTATCCCCCCACCTCCTCCACAGTCTCGTCCTGAGGCGTAGCGGCACTGTCGTCCAAGTCTTTCTGGGACCCCATCGTCATCTCCCCGCTCTTCCGCACGTCGCGGCTCTTCTTGTGCTTGTGGGCCAGCTTCTTCACGTGGCCGTCTGCCTTGCCACTGCTTAGCCGACGCACTGGACTGGTGAGCCACTTC
>TU178471
gcctaatattacaagaataaacTTTTTGTTGCCGACAACAACTAGGCTAATGATATACAATATCTTAATTCGGGGCTACAAtaaaaacattcggggctgaagccctTCAAAAATGACCTGGTTAATATTGGTGCACATGACTATTTAGACTGACCCACATTGCCCTCTAGTGGCGTGTAGTCGTATTTCGGCAGACAGTCTGTTTTCGGCACAACACCGGCCCAcccaaaatactatttctgcCTGTGCCactgcttctttttcttttgacatgctatactatgaataTTTTTCACTCTTTCCAACATAGGCTActataattacttttttaaacttttctcgacatactattctatgaattatttagcacttcttttgacatactatactatgacttttttcgacgtgctatactatgaatatttttcattcttttcaacatactatactatgactgttttaacccttgttttaacatactatggtatgactttttttatcactttttttcaacatactatactatgactttttttaatcacttttttcgacatactatactatgaatgttTTCAAAACATCATTATTGGTGACATGGTGGCTCTATGGTTAGCACAGCTCCAAATAACATCAGCAAGTAGGCACTGCAGACTCTGACCTTGGTTCAAACCCCAGTCTGGGCTGGacatttctgtgtggagtttgcatgttcttccagactttctttgacatactacactatgactttttttattcacttttcgacatgctataccatgactttttttcgacatactaaactatgacttttttataatttttttcgacctactatactatgggttTCTTCCCcattttttcaatatactacactatgactgttttcgacatgctatactatgactattattcacttttttcgacatactatactatgactttttatcacttttttcgacatactatttatggctttttcaacatactatagtatggcttTCATGAAAACACTATACTATACTTTCGGATTGCTTGTGGCTTGGATGTAGAATGTTTGTCCCATAACCAGGAGGGTTGTGGATAAATCCCACGGTCCTTCAGCAACATGTCAAAGTATAGTAGTAAgtttttttatgatgtttttcaacgtactattactatggcttttttcgacatactatactatggcttttttatcacgtttttcagcatactatattatgacctttttatcacttttttcgacattctatactatgccctgtttcgacaaactatactgtgacttttttattactatgtttttttcaaaaatcatACTAATCGAAACCAatcccacttttccaactattttcacttcttcaccttcttcttcacTTTTtagcattcacaagcattttctgcaggaaatgcattttctagttggcGCTTTTCTTGCTTTGATATTAAATGCACTTAGTTATTTCCCACCCCTGGTGTTTGTGTACAGTACGTGAGAGTATACATACTCTCACGTACTGCACTAGCTGCGACGCCCTCCCCTACAACAGGGCGATCTAATTAAATCCCGTCACGCGCTGCCCATTTGCTCAGGCACACCTGCACCCTCAGCCCTAattaatgctgctgctgttcatACCTGTATTGCCGTCCATAAGCTAGCTCGACTTCTAGCATGTCCATGTTTCTTCAGGACGTTTTTGTGGAGGAATTAACCGTGTTTACACAGTGCTGACAGCTGTTGCCCGTGTTCAGACTCCGTTTTTCGGTTGTTGCTCACATCAGCTGTGAACCACAAAAACGCACTTCCTGGCAGAAGTGGAGTTCTCCTGTCCATTTCAGTGACCGACTCTGTAAAAGTCCATTCTTCTCACAGCGTCACTTCACCAAGaAATGCGTGAAATCTAAGGTTCAGTTTCAAGAGGCCACAACAGAAAACTAACCAGTCTTCAAGAATTGTGGAAAACAAGGAATGCAGACAGTCTCATGGATTCAAAAGAAGCTTAAGGTGAAACATCATGCAAAATCTGTTTGACCTTCAGTATTAAAAGGAGAAAATGAGGATCCAACACAGACTGTGCTGCTGGATGGCCATAGGTGGAGGCAGAGGTACTGAGTCAGCGCCCTCCTCGCCCTCCTCCTCGCCGCAGCTCTGCATGCCCGAAGAACTCGACTTGGACAACGTGCCGCTCGACAAGCCCTCGTTACGAACCCTCTGCGGCACACACGGATGGCACAGTAGAGATTACATCACATGACTTTACACATCTGCTAAACGGAGAGAGGGCAAACATTGTTAATTGTGTAGTATCGTGTATCCCCCCACCTCCTCCACAGTCTCGTCCTGAGGCGTAGCGGCACTGTCGTCCAAGTCTTTCTGGGACCCCATCGTCATCTCCCCGCTCTTCCGCACGTCGCGGCTCTTCTTGTGCTTGTGGGCCAGCTTCTTCACGTGGCCGTCTGCCTTGCCACTGCTTAGCCGACGCACTGGACTGGTGAGCCACTTC
>XR_005641204.1
ACAACAGGGCGATCTAATTAAATCCCGTCACGCGCTGCCCATTTGCTCAGGCACACCTGCACCCTCAGCCCTAattaatgctgctgctgttcatACCTGTATTGCCGTCCATAAGCTAGCTCGACTTCTAGCATGTCCATGTTTCTTCAGGACGTTTTTGTGGAGGAATTAACCGTGTTTACACAGTGCTGACAGCTGTTGCCCGTGTTCAGACTCCGTTTTTCGGTTGTTGCTCACATCAGCTGTGAACCACAAAAACGCACTTCCTGGCAGAAGTGGAGTTCTCCTGTCCATTTCAGTGACCGACTCTGTAAAAGTCCATTCTTCTCACAGCGTCACTTCACCAAGaAATGCGTGAAATCTAAGGTTCAGTTTCAAGAGGCCACAACAGAAAACTAACCAGTCTTCAAGAATTGTGGAAAACAAGGAATGCAGACAGTCTCATGGATTCAAAAGAAGCTTAAGGTGAAACATCATGCAAAATCTGTTTGACCTTCAGTATTAAAAGGAGAAAATGAGGATCCAACACAGACTGTGCTGCTGGATGGCCATAGGTGGAGGCAGAGGTACTGAGTCAGCGCCCGTCACCCCCTCCTCCTCGCCGCAGCTCCACATGCCCGAAGAATTCAACTTTTTAAAGGTCTCGTCTCGGAATTGACCGCATTTTTACTCTGTCTTGTCTCGGTCTTAGATAAAGAGGActttatttcaagaccggtcaagaccacaactgccttTTTGATTTTTATCAAGGCATTTCTCATAATACACTTTTGGCAATAAAAGCGGTGAATGAAGAAGaatcttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178469 False 2352 lncRNA 0.38 4 11057815 11067603
TU178470 True 2507 lncRNA 0.41 4 11028799 11067603
TU178471 False 2507 lncRNA 0.41 5 11028799 11067603
XR_005641204.1 False 809 lncRNA 0.45 4 11057815 11066060

Neighbor

gene id symbol gene type direction distance location
c13h5orf49 NA coding downstream 74990 10948782 ~ 10953809 (-)
nsun2 nsun2 coding downstream 173557 10842292 ~ 10855242 (-)
med10 med10 coding downstream 228697 10792772 ~ 10800102 (-)
irx1b LOC104922770,LOC102210852,LOC101465594 coding downstream 293823 10677792 ~ 10734976 (-)
irx4b LOC103371354,LOC102210570,LOC100705673,LOC102292411 coding downstream 367319 10656635 ~ 10661480 (-)
LOC120571724 NA coding upstream 87081 11154684 ~ 11157723 (-)
LOC120571727 NA coding upstream 93202 11160805 ~ 11168022 (-)
LOC120571725 NA coding upstream 104959 11172562 ~ 11175115 (-)
LOC120571728 NA coding upstream 109488 11177091 ~ 11181079 (-)
LOC120570726 LOC103367407 coding upstream 144787 11212390 ~ 11215477 (-)
G132586 NA non-coding downstream 143314 10884494 ~ 10885485 (-)
G132585 NA non-coding downstream 145209 10882668 ~ 10883590 (-)
G132584 NA non-coding downstream 148749 10879825 ~ 10880050 (-)
G132572 NA non-coding downstream 209251 10819309 ~ 10819548 (-)
G132568 NA non-coding downstream 212218 10812795 ~ 10816581 (-)
G132671 NA non-coding upstream 113811 11181414 ~ 11185984 (-)
G132737 NA non-coding upstream 167799 11235402 ~ 11235853 (-)
G132735 NA non-coding upstream 224450 11292053 ~ 11293802 (-)
G132751 NA non-coding upstream 229814 11297417 ~ 11298831 (-)
G132752 NA non-coding upstream 280096 11347699 ~ 11433315 (-)
mrpl36 mrpl36 other downstream 379990 10646479 ~ 10648809 (-)
khdrbs3 khdrbs3,LOC102789115 other downstream 2567146 8336103 ~ 8461653 (-)
G131925 NA other downstream 3606683 7421704 ~ 7422116 (-)
pkib NA other downstream 4333278 6667652 ~ 6695521 (-)
epb41a epb41,LOC103356861,LOC102799958 other downstream 5373638 5591579 ~ 5655161 (-)
myclb mycl,LOC103361521,LOC102795093 other upstream 485583 11553186 ~ 11560017 (-)
G132904 LOC108238696,LOC104946140,LOC108238732,LOC107383217,LOC102235437 other upstream 650085 11717688 ~ 11720165 (-)
G132917 NA other upstream 730854 11798457 ~ 11801231 (-)
dlgap3 dlgap3 other upstream 889548 11957151 ~ 12098633 (-)
smim12 smim12 other upstream 1051800 12119403 ~ 12121822 (-)

Expression


Co-expression Network