Gene
RNA
| Item | Value |
|---|---|
| gene id | psmb4 |
| gene name | psmb4 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053124.1 |
| NCBI id | CM020921.1 |
| chromosome length | 39224300 |
| location | 35013313 ~ 35020182 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| psmb4 | Predicted to enable threonine-type endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMB4 (proteasome 20S subunit beta 4). |
| description |
|---|
| PREDICTED: proteasome subunit beta type-4 |
| id | name | namespace |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0005839 | proteasome core complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02736 | PSMB4; 20S proteasome subunit beta 7 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039820348.1 | True | 943 | mRNA | 0.56 | 8 | 35013313 | 35020182 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120571430 | NA | coding | upstream | 48033 | 34964583 ~ 34965280 (+) |
| LOC120571414 | NA | coding | upstream | 54953 | 34951936 ~ 34958360 (+) |
| LOC120570957 | NA | coding | upstream | 61837 | 34945724 ~ 34951476 (+) |
| LOC120571407 | NA | coding | upstream | 92197 | 34907604 ~ 34921116 (+) |
| LOC120571415 | NA | coding | upstream | 108705 | 34900602 ~ 34904608 (+) |
| rfx5 | rfx5 | coding | downstream | 608 | 35020790 ~ 35030537 (+) |
| si:ch211-133n4.6 | NA | coding | downstream | 141618 | 35161800 ~ 35177359 (+) |
| LOC120571393 | NA | coding | downstream | 177151 | 35197333 ~ 35214312 (+) |
| LOC120571418 | NA | coding | downstream | 297396 | 35317578 ~ 35327015 (+) |
| LOC120571423 | fam63a | coding | downstream | 312730 | 35332912 ~ 35336421 (+) |
| G138586 | NA | non-coding | upstream | 6915 | 34956883 ~ 35006398 (+) |
| LOC120571431 | NA | non-coding | upstream | 125340 | 34884295 ~ 34887973 (+) |
| LOC120571427 | NA | non-coding | upstream | 188946 | 34820405 ~ 34824367 (+) |
| G138510 | NA | non-coding | upstream | 551374 | 34461681 ~ 34461939 (+) |
| G138477 | NA | non-coding | upstream | 559550 | 34445122 ~ 34453763 (+) |
| G138599 | NA | non-coding | downstream | 10832 | 35031014 ~ 35031789 (+) |
| G138646 | NA | non-coding | downstream | 108723 | 35128905 ~ 35129153 (+) |
| G138652 | NA | non-coding | downstream | 127445 | 35147627 ~ 35148541 (+) |
| G138764 | NA | non-coding | downstream | 264495 | 35284677 ~ 35285583 (+) |
| G138769 | NA | non-coding | downstream | 301743 | 35321925 ~ 35322254 (+) |
| LOC120571788 | LOC103147980,LOC106964283,LOC107396830,LOC103369207 | other | upstream | 439936 | 34540077 ~ 34573377 (+) |
| LOC120571618 | NA | other | upstream | 834767 | 34163590 ~ 34178546 (+) |
| LOC120572044 | NA | other | upstream | 1066350 | 33890732 ~ 33946963 (+) |
| LOC120572054 | deptor | other | upstream | 1140019 | 33861199 ~ 33873294 (+) |
| LOC120572071 | NA | other | upstream | 1235837 | 33774507 ~ 33777476 (+) |
| LOC120570959 | NA | other | downstream | 220113 | 35240295 ~ 35290255 (+) |
| mllt11 | NA | other | downstream | 279105 | 35299287 ~ 35316864 (+) |
| LOC120570961 | NA | other | downstream | 351785 | 35371967 ~ 35377206 (+) |
| mindy1 | fam63a | other | downstream | 358657 | 35378839 ~ 35444328 (+) |
| LOC120571398 | NA | other | downstream | 383254 | 35403436 ~ 35517319 (+) |
