lpcat1 (lpcat1,LOC101478534,LOC102209501)


Basic Information

Item Value
gene id lpcat1
gene name lpcat1,LOC101478534,LOC102209501
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 10613944 ~ 10643727 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039820912.1
CATCTGACTACTAGCCAGCGCCTACTCAGTCATCCCTCCCCCATGGATGTATTCTAGCATCAGTCTCTCCTCTAGTCAGAGGAGGGTAGGCTGGCAGCAGAAGAAGCTATTCGCCTacatcataaaaaaacaaagaagtcAACTAACGTTACGGGACATTTTGGACTctacttgtattttttatttcggTGTGTAAGTTCCTGTCGTCAGCGATGAAGTCCTCAAACAGTCGTCCCTCCAGAGTGGGTAGAAACCCCTTCGTCCACAAGCTGAAATTCACCGTTACAGAGAAAATAAAGaTAGGACTGATGTCAGTTACAGTGTTTCCCGTTCGGCTGCTGCTGGTGTCCACCCTCATGCTACTGGCGTGGCCCTTCGCCTTCACAGCCGCCCTGGGGCGTTCTGATTTTGTCATTGAGCCACAGCCGTGgtggaggagGTTTATAGACCTGTGTCTACGGGTGATCATGCGAGCCATGTGGTTTTGCGGAGGTTTCCATTGGATCAAGGTGAAAGGGGAACGGGCGGCAGCCTCGGAAGTTCCCATCCTCACCGTGGCACCACACTCCTCCTACTTTGATGCCATCCCAGTCACCATGACCATGTGCTCCATAGTCACCAAATTAGAGAGCAAGAGCATTCCCGTCTGGGGCACTCTGATCAGCTACATCAGGCCGGTGTTTGTGTTTCGGTCGGATCAGGACTCCAGAAGAAAAACCGTCGAGGAGATCAGCCGGAGAGCCCAGTCTGGAGGGGAGTGGCCTCAGatcATGATATTCCCAGAGGGGACGTGCACCAACAGGTCGGGGCTCATCTTGTTCAAGGCTGGGGCTTTCATACCAGGACTCCCAGTGCAGCCTGTGGTGCTACGCTACCCAAACAAACTGGATACTGTTACATGGACGTGGCAAGGTCCCGCAGCGTTCAAGATCCTATGGCTCACTCTGTGCCAACCTCATAATCCCATGGAGATAGAGTACTTGCCTATTTATACTCCatcaaaagaggaaaaggaaaacCCTGCCCTGTTTGCCAACAATGTCAGAAAGCTCATGGCCAAAGCACTGGAGCTGCCACTCACAGACTTGTCCTTTGATGACCGTGAAATCAGCCTCGCACGGGGCCCACTGCGCATACATGACCTCAGCAGCCTGCTGGAGTTCCACCAGCTGGTGTGCCGCTTGGGGCTGAGAGCAGGAAGAACAGACAACGTGCTGGAGGAGCAGGCCAGAAGAGCCAGAAAGCTGCGGGGAGACAGGCAGAGTTTAGAGGACTTTGCCCAGTTCCTCAACCTGCCAGttacagacacactcacacaagtcCACAGCCTCTTTGACCAGCGTGGAGATGGGCAGATTGACATCAGACACTATATCATTGCTCTGTCTACCGTTCATCGACCATCAAAGTCAATGGAGACCCTCAAGTTGGCCTTTAAGATGTATGAGAGCGAGGAGAACGGGTACGTCCTGGAGGAGGAgctcgccgccatcttggaaataATGTTGGGAGTGAAAGAGGTGGAACTTTCAGGTCTGTTTTTAACGCTTGACAGACCTGACTCAGCGAAGATCACATACGATGAACTTCATCATTATATAGAGCAGCACCCGTACTTCGTCCAGGATTGCCTCGATTTTCAAAACCATCCGCGCAAATTCGGGCCACCGAAGAGCTGCAACGGCCAAAAGCACAACAAAGAGGACTGAAGAATGGACTATAATGCAACCAAAGTCCATTCTATTGACTCTCTTCTCTATCCGATGTTAACAGCATCTCCAAATGCTTTCCTTGCACCTCTGTGCCTTTTTTAAGTAAGGGTAAAGAAAGAAATAGACCGAGCATTAACAAAGTTGTAAACATTGAGGATAGAGCAGTGCAGCACAGGATGGAATCGCTTATCTCAGTTTTCTTCTGAACTTTCTTTTTGCcttcctttgtatttttgttcccattatgatataaaaaacactttttttttgtgctgcagatatattatttattttttacatttatattatttgtattttcttttagcCCTTTTGTCTGATCTCAGACAAATGGACATCGTGCTGCTATCAGTGCACATAGAAACATAGAAACCTAATTTCAGGTAAGAAGGATCAGGATATAAATCATGCTGCCATTCTGTGCTAAGACAGATAAGACACTAAACTACATAACAAATCTGCCACTTACTGTAATCCAGAGAAATCATTCCTTACTGCAAGCAGCTGTGTCACTGCCGTAGATTTACAACcccttgcaaaaaaaaaaaacagttgacgAGGACCAGATAGTGACTTATTATATTTTGATCTTAATACCAATGAAATCATCCAgctcttattttttttgtaatatgagTAATGTTATGCCTAATCTTTTTAAATGTctataatgtttccaaaaatagtttttctCCACCTTTTTTAAGGGAAATCATTTTTAACGGTCTAGTTTTTcttagaaaaacattttttaagagGATGGTTGTTGAGTATTTTTGGAGCATCAAATCCTCCCAATACACAAGTGTGAGACTGTGCATTTTTTCGCCGGTTTAAAAATCGATCTCGGATGGTTTACGCTGGACTGACACATTTTATACCTTATGGCTGCAATGTTCCTGTAAAGTGTAATTTCAAGAGTCTTTAATGCAGAAACCAAAGCTCCGATTGCATtcattttacaaataaaaaaaacaatcatttttg

Function

symbol description
lpcat1 Predicted to enable O-acyltransferase activity. Predicted to be involved in phospholipid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Orthologous to human LPCAT1 (lysophosphatidylcholine acyltransferase 1).

NR:

description
PREDICTED: lysophosphatidylcholine acyltransferase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13510 LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039820912.1 True 2717 mRNA 0.45 14 10613944 10643727

Neighbor

gene id symbol gene type direction distance location
maco1a LOC104936239,LOC103371231,LOC101480039 coding downstream 335719 10265286 ~ 10278225 (-)
ldlrap1a LOC103371229,LOC101481197,LOC100704334,LOC102779987,LOC104936238,LOC103472050,LOC107396970 coding downstream 350213 10246905 ~ 10263731 (-)
marcksl1b NA coding downstream 551230 10059966 ~ 10062714 (-)
hdac1 LOC103372307,LOC100691799,LOC101481782,LOC104920778,LOC106531403 coding downstream 557291 10048535 ~ 10056653 (-)
LOC120571653 LOC104958285,LOC103358781,LOC102796220,LOC100690730 coding downstream 1056136 9552291 ~ 9557808 (-)
irx4b LOC103371354,LOC102210570,LOC100705673,LOC102292411 coding upstream 12908 10656635 ~ 10661480 (-)
irx1b LOC104922770,LOC102210852,LOC101465594 coding upstream 34065 10677792 ~ 10734976 (-)
med10 med10 coding upstream 149045 10792772 ~ 10800102 (-)
nsun2 nsun2 coding upstream 198565 10842292 ~ 10855242 (-)
c13h5orf49 NA coding upstream 305055 10948782 ~ 10953809 (-)
G132484 NA non-coding downstream 185230 10428089 ~ 10428714 (-)
G132464 NA non-coding downstream 276145 10337557 ~ 10337799 (-)
G132430 NA non-coding downstream 511757 10101685 ~ 10102187 (-)
G132405 NA non-coding downstream 602347 9915196 ~ 10011597 (-)
G132349 NA non-coding downstream 700823 9912855 ~ 9913121 (-)
G132520 NA non-coding upstream 5677 10649404 ~ 10650144 (-)
G132537 NA non-coding upstream 98753 10742480 ~ 10742729 (-)
G132538 NA non-coding upstream 100461 10744188 ~ 10744411 (-)
G132568 NA non-coding upstream 169068 10812795 ~ 10816581 (-)
G132572 NA non-coding upstream 175582 10819309 ~ 10819548 (-)
khdrbs3 khdrbs3,LOC102789115 other downstream 2152291 8336103 ~ 8461653 (-)
G131925 NA other downstream 3191828 7421704 ~ 7422116 (-)
pkib NA other downstream 3918423 6667652 ~ 6695521 (-)
epb41a epb41,LOC103356861,LOC102799958 other downstream 4958783 5591579 ~ 5655161 (-)
G131356 NA other downstream 5853219 4760047 ~ 4760725 (-)
mrpl36 mrpl36 other upstream 2752 10646479 ~ 10648809 (-)
myclb mycl,LOC103361521,LOC102795093 other upstream 909459 11553186 ~ 11560017 (-)
G132904 LOC108238696,LOC104946140,LOC108238732,LOC107383217,LOC102235437 other upstream 1073961 11717688 ~ 11720165 (-)
G132917 NA other upstream 1154730 11798457 ~ 11801231 (-)
dlgap3 dlgap3 other upstream 1313424 11957151 ~ 12098633 (-)

Expression


Co-expression Network