G140514 (LOC106908230,LOC105925506,LOC101079287,LOC100690429)


Basic Information

Item Value
gene id G140514
gene name LOC106908230,LOC105925506,LOC101079287,LOC100690429
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1719925 ~ 1725333 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU189483
ggTGTTTGGATTTGAATATTTATCTCAGCATAGACCTCCTGTAGCTCCAaatatatgttaaaaaaagcagtTAGAGTTCTGTATACAATGTGAATCATAATGCGGACGGTGTCAtattatgtaaatgtatattatCCTATTGTCTTATGACagtatttgactttttctgcatgtgtgtgtgtgttttttttgatgAGTCCCCCCTTCTCTTTCTGCTGCTGTGACTGCTGTGCTGCAGTCGGTAGGTTTTTCTAGCCTGGGCTCTCTCCTTCTCCAGGACCTCAGTGTCATCCAGAATCTCCAGGCCTGGGATCTGACTGATGACATACTGTCTGTAGTCTTTGTACTGGGTCAGACTTCCTCCGTTGAAATAGCTAGGTGCTGCCTCGTTGTTCATCATACTGAGAATCTTTATGTTCGGGAACTTCCGTCTGATTTCTTCCACAAACACAGGCAGATTGTTGATCTTGTTCTTGTTGATGCACACTGTGGTGACACTCGGCATGTAGGGGAACTTGATGTGAGATGTGTAGTTGTTGCAGTCCAGGATCAGAGTGCTGAGCTTCTCCAGCTGACCCAGCAGAGCCGGGTTTCATCCAGCAGATTGTAACTCAGATCCAGCACCTcgagtgtgtctgtttgtgttagAATGGCTTCATTGGGGATTTCGGTCAGGCCCTGGTGAGCAAAAGAAAGCCACTGAAAGCTGGGTTGACTGTGTTGGCCCGAGGTATGATGattcatgataaaaaaaacttcTTCTTTAGTTCCTCTCCACTTGTATTAATGGAGATTAGGAGAGGAGTCAGATGATTATGTCATGA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein C10orf11 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189483 True 824 lncRNA 0.44 4 1719925 1725333

Neighbor

gene id symbol gene type direction distance location
LOC120573508 LOC103361692 coding downstream 54980 1660137 ~ 1664945 (-)
slc1a1 slc1a1 coding downstream 145801 1550528 ~ 1574124 (-)
LOC120573289 NA coding downstream 219609 1492274 ~ 1500316 (-)
sorcs2 sorcs2 coding downstream 290208 1018258 ~ 1429717 (-)
LOC120573525 mrps28 coding downstream 806245 906545 ~ 913680 (-)
aco1 aco1 coding upstream 24186 1749519 ~ 1774918 (-)
LOC120573473 NA coding upstream 158569 1883902 ~ 1885687 (-)
LOC120572242 NA coding upstream 294279 2019612 ~ 2022367 (-)
pde5ab pde5a coding upstream 953612 2678945 ~ 2797531 (-)
si:dkey-219e21.4 NA coding upstream 1087222 2812555 ~ 2818659 (-)
G140492 NA non-coding downstream 56673 1663021 ~ 1663252 (-)
G140454 NA non-coding downstream 188975 1530235 ~ 1530950 (-)
G140451 NA non-coding downstream 198086 1519821 ~ 1521839 (-)
G140437 NA non-coding downstream 237220 1481738 ~ 1482705 (-)
G140418 grpel1,LOC102799061 non-coding downstream 241112 1468232 ~ 1478813 (-)
LOC120573239 NA non-coding upstream 50504 1775837 ~ 1782596 (-)
G140534 NA non-coding upstream 61971 1787304 ~ 1788089 (-)
G140535 NA non-coding upstream 65377 1790710 ~ 1790942 (-)
G140536 NA non-coding upstream 65707 1791040 ~ 1791662 (-)
G140548 NA non-coding upstream 87187 1812520 ~ 1839129 (-)
tspan5a LOC100711712,LOC102299272,LOC102195201,LOC105938388,LOC103480072 other downstream 70493 1623259 ~ 1649432 (-)
tada2b tada2b other downstream 231499 1482789 ~ 1488426 (-)
G140274 NA other downstream 1268255 443550 ~ 451670 (-)
LOC120573528 NA other upstream 201799 1927132 ~ 2032506 (-)
G140615 NA other upstream 326148 2051481 ~ 2058191 (-)
camk2d1 LOC100695450,LOC101472930 other upstream 728733 2454066 ~ 2573483 (-)
arsj arsj other upstream 872501 2597834 ~ 2622100 (-)
LOC120573530 NA other upstream 1413788 3139121 ~ 3143189 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110500625 cj011 misc NC_048585.1 CM023239.2 49606099 ~ 49609714 (+)