LOC120573239


Basic Information

Item Value
gene id LOC120573239
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1775837 ~ 1782596 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU189515
GATGAACGCTAGGAGAAAGACGTTACTGAGCCAGTGTGAGCGAAAcaagagtaaaaaagtaaaagtaaaacttttttaagttctcattttattttctgaagTGTTTTACGTTACATTATATCTACACAGGTAGACTGTGGTTTATTTTGCTGTTATTTAGCAAGTTGACCGAAAGTAAAAAGTGACTGTTCGAATGCTTGAAGCCACGTTATACACTGCAAGCAGACGGCAAAGATGACGAGCCTCCCGTGAGAAGATCCTCGACCGACAATCACATTGCGTCCGTGTGGTTCACCTGCGTGCTGTACAAGGACACCAACTCATTCATCCCGGTTGCGGTAGGACTGGTCTGCAACAATTCTTTGATACGAGTGGAGTTTGACGGACTTGGGACCTCGGTAAGAGCAGACTCACTGTAAACTGACAACGCTTTTTCTTCTGCGTCACACCACGCGGGATTGGTATGGACTGCACAACGTGGTCGCTAGCAAGATTTTGCACTCCTTGAAAAGAGACTGATTAAGGTTTAACTGTATGTTGAATATAATTCACCGCTTTTCGTTTTGTTTAACTGTGAATGTTATATTTGATTTAACATTACTTGTGTTATTTtccatgtagcctactggtcAAACTGGTAAATGGGTTTTGATATTGCAGAAGCTTAGTTCAGTAGCTCACTGGTGTAGCAGGTTAATAGGGAAATAACAGAGATTCTAAAATAGCCCTATCCCAGTTGGAATAAGAACTTATTACTAACTAAGATTAGAACTTAAAGAGTTAACTCAAGATAATAGAAACTAAATAGCAAATTAAAGGGGCAACTTTAATTtagcttaaaggaatatttcaccgctggaaagctgaatatatctttaaattgggtcacttatgtagtagaaatgtggaaaaaaaaaaaatttaattggtGCCTTCCAGAAaatgttttggtcttatatggatgaaaaacaccaaatcccagaatgcacctgcttcgttgctttgagtccactcccaagccacgcctaccacttgacagacagacagaggcattcaactcaaggaggatgtagtccagcttgttgtttaatgagcagacacttgcaagcaggatggatgggacaggtggacagctagcgttagctttccacctagccgatgaggatgtcccctagccggctagcggcattgagcgacaccgctggtctccgtgcaggcgaagctcacgtagtgtgccgagtattgcgtctgtaataacgtttcctccatattctccgaactgtaccgatgtatcccgttggtacacacgtccggtagtttgaatgcagataattgttgtaaatgttttctgctgaaaaccgagagcctgtttagcgaagcttcaagatggctgacagtcgttttcattcggaatacctcagccagactcggcagtccaaccccctgtgggcgtgttgaaaacatgcggaagtagatcctactactggctgtagtccttggctctggcccaaaaatcttccgatgacgcaaaaatcgtcagtttacgtcatcggaagattttttccaggccccaaatgcagagatctctcgtctcagggggacatgagggagggaagcacggtcattcagaaatactatcgggtttctactgatacaaagctgaatgctaaatcggtgatgTATCCCTTTAAGTTGAAAGTCATTCTTGAAACCAAATAGGTTGAATCAAACTGAAGATGAGAAATATagtatttcatttcttttccattcaaaggaaaaggaaaggtTCAATCTTGAATAGATTGCCTTTAAGTGCAAATATTGTGTCCATGTTATGTGAATTGTGTATGTAAActgttattttggtaccatttacTATTTCTATCGGTTTCTGAATTCTTCCTATTCTTTTATATAAACAAGCTGGCATTTAAACTTACTTTTCTGTCTGGggtattagggctgggcgataaaatgataacgatatgtatcgcgatagacacgtaatcaatatcaatagaaaatgcgttcgataaaacgttagataacttgtttttcttcttcttcggaagaaaccagaagttgcaaagcaagtttggttgcatgaacaaaggcactccctctctggtaacctagcaacgtatggagtgacactctaacagccaatcatgtaacagtatgtttggttgcgccacatcgctgtctcgtgtcggattctacaataacagaaccgggtGTGAGCGGAGCGATAAGTgggaaagtgagtgccgcagcgagcgaggaaattgttgataaaacaggaaaagtcagtttggcagttttggggattttataagtctgaccgtcgtccccaccaacactaccgcaaacttgttttaccaccttagccgcgctcacactttggagcacagccgtattcgccaggaacgtccaacaacatctgcagctggtacaccgcacaagcagcagaccgccatggagaggtactctgcatcagcgccttactaaacgctacaaagaaataacggaggcagacatgctgagcactgtccagaagccaggttaccaacctagcactaaacctgcagaaaatagttcttctcaggtttctctatgtttatatttaacactttgcaccatgtTATTACACCTTGttaagcagttcttacttattctttcttcactgtgattttagacttatttttacattttacattttaattatttgagtgatttccatggttgtgctgacttttctgcttttataactgaggggattataatcagaggaaggttaagtttaaaataaaaatgtttaaatttaatatatttttctcctggtcctttattttaaataggtcataaaaaatatctaattatcgatatcgaccgatatgaaacacttacatcgtgatacagttttcagccatatcgcccagccctatggggtattattatttagcTACAAACTGCTCCTCCGAACCTAGAGCCTGGTCCTAACTTATATACTACTCGTAGTAAGTGctacaactagttcaatcaacccagggtttcccaatccagcgcattcacataaaagaggcggtgtttggaCAGCATGGCCAattgcaaacatctaccagttattttaaataagaagatatcacttccccatctaAGATGCACAAGATGTAAAGGCTTCTAGGATtggttgataactcaaacttgccgagacaCCCATTTGATTACATAGACTCAGTTACACAGACTGTTACgttctcgttcagtagcctggtgacagcctacctaccaTGCAGCctgcaacattcacttctctaacatttaacttaacataactaccaagataacatgacgtgtatttgtatgtgatgtacttaatgtgtgaattgccatgaacacaatcctctaagatgcaccagaaacaaggcttggttacAAGTGAAACACCGTTATGataaaccctgggttgaacctgaagttaccttgttaacgccaaatcttgcgtCGTAGTCCTGCAGGACTCaattccacatttttcacaatggTGTCAGGTCAATTACCTTCTAActaaacaaagacaaaacaaaagagcTGGTCATCTACACATCCAAATCACCACCTGGACTGAACCATACCCACATCCACGGCCAACCAGTTGAACAGGTCAGCAGTTTTAAATACCTGGGACTCATTATAAACAATAAACTCAACTTCAAGGAACATGTCACTACCACCCTGTTCTTACACAATGCTAACCGCCACCTGCAAAAACAAACTCACTAACATCACACATATTGCCTCCAAGGTAATCAGTCTCCCCACACCCAGCCATCACACGCCTAGCACGTACAATAGTAGCTGACACATACCGTCTGCTGAGTCAGTTCTTCACACTACAGTCATCTGGCCGCAGATACAGAGCACTGAACCTAAAGCCTATttcaaaaaaaggttttgtcCCCACCGCCATCACAGTGCTGAACAAACTATAATTCTGCCACCACCACCCCAGCTGCTTTGTAGTTTTTCACATTtgatgtgtctatgtgtgtgtcttaatATGATGTGTTCTTTTTAGTGTGTTACATGTTTTATGTGTGCTATGGAACATGAAAAGATGTGTGGAAATGATTATGATTTTTATAATTATCTCAATGTTATGTTCTGTATTCCCATGATATACGTATAGCGCAGTGAACAACTGTTCtcattcatttttgtattgAAGACAATCCAAAAGTACATGTTAAACAGTGTGTTGCTGTTTGCAGGTTCTACAAAGTCCATCCTCATGCTTGCCCATCTTTGCTAGATCCCATGCAAGTCCACAATGCCCGAGTCTCAGCCTTGTCATTAGTGTCTTCTTTCTTTGCCCAAATAGCACTCCTCTGTCTGTACCctattttgaattgaaaaataaCGACGACCCCTCTTTTCCTTTTCCCACTGCCTTTGCCACACTGCTGTAACATTTTTTCTTAATGACCGATTCAGATATCCCAACACATACCCTTAAATCAATGTCTCTTTTCAGTGCCATTTTAGCTGCCTTATCTGCTATCTCATTCCCGAAAGGCACCCACAGAAATCCCACCAATGCCAGGGGGACTACTACCTGTTTTTATGGTTTTTATAGGAGGCCCTGCTGCAGTGATTGGCCAAAAGAACACCAGGTAGTTATCAGTTAAACTCATACTGCTAGACATATGTCTGTCTTGTTGAGTTTTTGCTTCTGGCCCTGGTCTATAAAAACCACCTCAAAGCCAGATGGTGGACCCACAGCCCTCTGATATTCATTTACACTCACTTCAGTTTGAGATTTGATGCTCAAAGGTCTGAACTTGTGTGCTAAATGTGACCTCTGTGGAATAACAGTTTTACAAAGCACATGGTTCAGCGGTGCATTGGGCTGCAGTGGGAGATGCTGGATCATCAACAGAATACTACTGACACACTGACTCTCATGTTCAGTAACTGTTCATGTTATAACTGATTGTTAAAGTTTGTAAAacattacatatattatatagtattgtgtgttgttcTCTCAGATGTGTGTGAACTGGAACTGGACCCAAACACAGTAAACAGAAGTCTCAAACTGAAAGGTGACATATTATATAGGTGTTAAAGGATGAGCCATATACCTGATCATCCAGCTGggctcagctgctgtgtagagatggtctgactggtcgctgttactgggagggcGAGTGGAGAGGAAAGGTTTCTAGATGAGTGAGTTCCAGAGGAGTCAGCAGGAGAGGAGCCAGTGAAGACTGgtatcagtcctggagtctggaGTGCTCTGATGATGTTTACTGTGTCTGTCACAGACCTCACTTCCTTCAATGGTCTCTAACAGAGTAGCAGTGGATGTGGACTGACCTGCTCTCCTCTGACActctgatccacctccacacctgcAGCTCCACATTCACTCTGCCTCTTTATCCTGGGTTTAGGTTGGGGTCtagttcctcagtgtctctgcgTCCTCTCTGCAGGTCTGAGAGTCTCTCCTGTGGACAGAAACACTGACTGAAGATCAGCTGCTGAAGCAAAAGTTCAGTCTGTTCTCCATTACACACATTCTGCACTGTCGAGCACATCTGTCTCAGACTCTAACACAAATCAGTCGTATGTCTGATTTCACCTCTTAGATTATCACCGTTTTAACTGTTTCACTAGAAACACTTAATGATTTATGGCTGGCTCTCTTTATGAGTTTCAAAGCATTCAACATCATCAGAAAGTTTTTAGACATAAACAAAATTGTTTTGTGATGGTCTggttttttgagtgttattcACACTCAGCTGCTTTAAATTATAAGTGAAAAGTCCACAAAGGAAGAAAATATGTTGAACTTGTTATggtttgctctctctctgccctgagttgggtgttttttttccctgtttgtctgtgtgttctgtgttttttcCACCTGGAGTGCTGGAGGCGTGTCCGGAGGAAAGTAGGTCAAGGGGCGTGGCTGATCCAACACTGCACAGCCGGTCTTCACAGCTGCAGCTCATCTACTTGATTCACTCCAGCAATACTTAAACCTGGGCTGATCACCTCTTTGACGCCAGTTCATTATCGACAACATATGTGtTCCCGCTCTGACCTGGTGCTTCCTCCGCTGTGCCTGCATGCTTCAAGCCTAACCGTCCAGCCTCCGTCTCCAACCTGGGATACCATCTGTGTACTCATCTCTGCCTGTTCACCTCGTGTCCCATAACAACCTGGACTCTTCCCCGTCGGCTCGCCTCTAGCCTCAGACCAGCCAGGAGTTTCCCCACCCTGACACTACCTGCAGTGTTTCCTGAGTACACTCTGCTCCATTAAACCTTTTGTAACTACTTTACGTTGTCTGTGTAATATCTCTGCGTTCTGGGTCAGACAAGCCCCttaacagaactataaaacaacaataactaGAGAGCATACATATGTGATTCTGTGGGATGGGGAATACACTAAACACTACACACAGCTGAGTGAATGTAATGTTACATTACGTTTTGGGTATATCTG
>XR_005641667.1
atctaattatcgatatcgaccgatatgaaacacttacatcgtgatacagttttcagccatatcgcccagccctatggggtattattatttagcTACAAACTGCTCCTCCGAACCTAGAGCCTGGTCCTAACTTATATACTACTCGTAGTAAGTGctacaactagttcaatcaacccagggtttcccaatccagcgcattcacataaaagaggcggtgtttggaCAGCATGGCCAattgcaaacatctaccagttattttaaataagaagatatcacttccccatctaAGATGCACAAGATGTAAAGGCTTCTAGGATtggttgataactcaaacttgccgagacaCCCATTTGATTACATAGACTCAGTTACACAGACTGTTACgttctcgttcagtagcctggtgacagcctacctaccaTGCAGCctgcaacattcacttctctaacatttaacttaacataactaccaagataacatgacgtgtatttgtatgtgatgtacttaatgtgtgaattgccatgaacacaatcctctaagatgcaccagaaacaaggcttggttacAAGTGAAACACCGTTATGataaaccctgggttgaacctgaagttaccttgttaacgccaaatcttgcgtCGTAGTCCTGCAGGACTCaattccacatttttcacaatggTGTCAGGTCAATTACCTTCTAActaaacaaagacaaaacaaaagagcTGGTCATCTACACATCCAAATCACCACCTGGACTGAACCATACCCACATCCACGGCCAACCAGTTGAACAGGTCAGCAGTTTTAAATACCTGGGACTCATTATAAACAATAAACTCAACTTCAAGGAACATGTCACTACCACCCTGTTCTTACACAATGCTAACCGCCACCTGCAAAAACAAACTCACTAACATCACACATATTGCCTCCAAGGTAATCAGTCTCCCCACACCCAGCCATCACACGCCTAGCACGTACAATAGTAGCTGACACATACCGTCTGCTGAGTCAGTTCTTCACACTACAGTCATCTGGCCGCAGATACAGAGCACTGAACCTAAAGCCTATttcaaaaaaaggttttgtcCCCACCGCCATCACAGTGCTGAACAAACTATAATTCTGCCACCACCACCCCAGCTGCTTTGTAGTTTTTCACATTtgatgtgtctatgtgtgtgtcttaatATGATGTGTTCTTTTTAGTGTGTTACATGTTTTATGTGTGCTATGGAACATGAAAAGATGTGTGGAAATGATTATGATTTTTATAATTATCTCAATGTTATGTTCTGTATTCCCATGATATACGTATAGCGCAGTGAACAACTGTTCtcattcatttttgtattgAAGACAATCCAAAAGTACATGTTAAACAGTGTGTTGCTGTTTGCAGGTTCTACAAAGTCCATCCTCATGCTTGCCCATCTTTGCTAGATCCCATGCAAGTCCACAATGCCCGAGTCTCAGCCTTGTCATTAGTGTCTTCTTTCTTTGCCCAAATAGCACTCCTCTGTCTGTACCctattttgaattgaaaaataaCGACGACCCCTCTTTTCCTTTTCCCACTGCCTTTGCCACACTGCTGTAACATTTTTTCTTAATGACCGATTCAGATATCCCAACACATACCCTTAAATCAATGTCTCTTTTCAGTGCCATTTTAGCTGCCTTATCTGCTATCTCATTCCCGAAAGGCACCCACAGAAATCCCACCAATGCCAGGGGGACTACTACCTGTTTTTATGGTTTTTATAGGAGGCCCTGCTGCAGTGATTGGCCAAAAGAACACCAGGTAGTTATCAGTTAAACTCATACTGCTAGACATATGTCTGTCTTGTTGAGTTTTTGCTTCTGGCCCTGGTCTATAAAAACCACCTCAAAGCCAGATGGTGGACCCACAGCCCTCTGATATTCATTTACACTCACTTCAGTTTGAGATTTGATGCTCAAAGGTCTGAACTTGTGTGCTAAATGTGACCTCTGTGGAATAACAGTTTTACAAAGCACATGGTTCAGCGGTGCATTGGGCTGCAGTGGGAGATGCTGGATCATCAACAGAATACTACTGACACACTGACTCTCATGTTCAGTAACTGTTCATGTTATAACTGATTGTTAAAGTTTGTAAAacattacatatattatatagtattgtgtgttgttcTCTCAGATGTGTGTGAACTGGAACTGGACCCAAACACAGTAAACAGAAGTCTCAAACTGAAAGGTGACATATTATATAGGTGTTAAAGGATGAGCCATATACCTGATCATCCAGCTGggctcagctgctgtgtagagatggtctgactggtcgctgttactgggagggcGAGTGGAGAGGAAAGGTTTCTAGATGAGTGAGTTCCAGAGGAGTCAGCAGGAGAGGAGCCAGTGAAGACTGgtatcagtcctggagtctggaGTGCTCTGATGATGTTTACTGTGTCTGTCACAGACCTCACTTCCTTCAATGGTCTCTAACAGAGTAGCAGTGGATGTGGACTGACCTGCTCTCCTCTGACActctgatccacctccacacctgcAGCTCCACATTCACTCTGCCTCTTTATCCTGGGTTTAGGTTGGGGTCtagttcctcagtgtctctgcgTCCTCTCTGCAGGTCTGAGAGTCTCTCCTGTGGACAGAAACACTGACTGAAGATCAGCTGCTGAAGCAAAAGTTCAGTCTGTTCTCCATTACACACATTCTGCACTGTCGAGCACATCTGTCTCAGACTCTAACACAAATCAGTCGTATGTCTGATTTCACCTCTTAGATTATCACCGTTTTAACTGTTTCACTAGAAACACTTAATGATTTATGGCTGGCTCTCTTTATGAGTTTCAAAGCATTCAACATCATCAGAAAGTTTTTAGACATAAACAAAATTGTTTTGTGATGGTCTggttttttgagtgttattcACACTCAGCTGCTTTAAATTATAAGTGAAAAGTCCACAAAGGAAGAAAATATGTTGAACTTGTTATggtttgctctctctctgccctgagttgggtgttttttttccctgtttgtctgtgtgttctgtgttttttcCACCTGGAGTGCTGGAGGCGTGTCCGGAGGAAAGTAGGTCAAGGGGCGTGGCTGATCCAACACTGCACAGCCGGTCTTCACAGCTGCAGCTCATCTACTTGATTCACTCCAGCAATACTTAAACCTGGGCTGATCACCTCTTTGACGCCAGTTCATTATCGACAACATATGTGtTCCCGCTCTGACCTGGTGCTTCCTCCGCTGTGCCTGCATGCTTCAAGCCTAACCGTCCAGCCTCCGTCTCCAACCTGGGATACCATCTGTGTACTCATCTCTGCCTGTTCACCTCGTGTCCCATAACAACCTGGACTCTTCCCCGTCGGCTCGCCTCTAGCCTCAGACCAGCCAGGAGTTTCCCCACCCTGACACTACCTGCAGTGTTTCCTGAGTACACTCTGCTCCATTAAACCTTTTGTAACTACTTTACGTTGTCTGTGTAATATCTCTGCGTTCTGGGTCAGACAAGCCCCttaacagaactataaaacaacaataactaGAGAGCATACATATGTGATTCTGTGGGATGGGGAATACACTAAACACTACACACAGCTGAGTGAATGTAATGTTACATTACGTTTTGGGTATATCTGTGTATATGTAGCCTATACAAGTTGTACCAAGAGCTTCTGTGATATCAATTTGTGTTGTAAtaaactttttaaataaaaactctgAGGCTGTTactaaaatatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189515 True 6546 lncRNA 0.42 2 1775941 1782596
XR_005641667.1 False 3780 lncRNA 0.43 2 1775837 1779726

Neighbor

gene id symbol gene type direction distance location
aco1 aco1 coding downstream 919 1749519 ~ 1774918 (-)
LOC120573508 LOC103361692 coding downstream 110892 1660137 ~ 1664945 (-)
slc1a1 slc1a1 coding downstream 201713 1550528 ~ 1574124 (-)
LOC120573289 NA coding downstream 275521 1492274 ~ 1500316 (-)
sorcs2 sorcs2 coding downstream 346120 1018258 ~ 1429717 (-)
LOC120573473 NA coding upstream 101306 1883902 ~ 1885687 (-)
LOC120572242 NA coding upstream 237016 2019612 ~ 2022367 (-)
pde5ab pde5a coding upstream 896349 2678945 ~ 2797531 (-)
si:dkey-219e21.4 NA coding upstream 1029959 2812555 ~ 2818659 (-)
c14h4orf54 NA coding upstream 1334638 3117234 ~ 3128616 (-)
G140514 LOC106908230,LOC105925506,LOC101079287,LOC100690429 non-coding downstream 50504 1719925 ~ 1725333 (-)
G140492 NA non-coding downstream 112585 1663021 ~ 1663252 (-)
G140454 NA non-coding downstream 244887 1530235 ~ 1530950 (-)
G140451 NA non-coding downstream 253998 1519821 ~ 1521839 (-)
G140437 NA non-coding downstream 293132 1481738 ~ 1482705 (-)
G140534 NA non-coding upstream 4708 1787304 ~ 1788089 (-)
G140535 NA non-coding upstream 8114 1790710 ~ 1790942 (-)
G140536 NA non-coding upstream 8444 1791040 ~ 1791662 (-)
G140548 NA non-coding upstream 29924 1812520 ~ 1839129 (-)
G140553 NA non-coding upstream 47216 1829812 ~ 1835425 (-)
tspan5a LOC100711712,LOC102299272,LOC102195201,LOC105938388,LOC103480072 other downstream 126405 1623259 ~ 1649432 (-)
tada2b tada2b other downstream 287411 1482789 ~ 1488426 (-)
G140274 NA other downstream 1324167 443550 ~ 451670 (-)
LOC120573528 NA other upstream 144536 1927132 ~ 2032506 (-)
G140615 NA other upstream 268885 2051481 ~ 2058191 (-)
camk2d1 LOC100695450,LOC101472930 other upstream 671470 2454066 ~ 2573483 (-)
arsj arsj other upstream 815238 2597834 ~ 2622100 (-)
LOC120573530 NA other upstream 1356525 3139121 ~ 3143189 (-)

Expression


Co-expression Network