sox19b (LOC104926817,LOC103365479,LOC100693580,LOC102199731,LOC101477749,LOC104962535)


Basic Information

Item Value
gene id sox19b
gene name LOC104926817,LOC103365479,LOC100693580,LOC102199731,LOC101477749,LOC104962535
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6308898 ~ 6315817 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU191040
ctgctgAAATCTAGTTGGATGACATGGGGAACCTCCCCCCCTGTTGGACAATCAACACTGCATCCACAGGAACTGAACAGAACACACTGGCTTCTATGATCTGTGGTGTCGCTAAATCCCGTTTCAGTAGGCCTGTAGTGTCCTCCGTCCCACCACACCACTGCTGGTTTTGCTGCCTGTATGAGTTTGATTTGCTGTATTAGTTTTAGATTTGATCTGTTGATATAAATGTTAAGATGCGTTGTTCTGGAGTCGCTCTGTGTGTTCATTGTCACTTTGCTCTAGGCAAgagttgtattttattttttatttttttttggctttttcagtaagtgaatgaaattaaatttgaaatgctgcatttcagttgttttattccaaacgGCAGATTAAGACTTGCAAATTATGTCTTCCACCAAGTAAACTGGATtggcaaatctttttttttttattattgacaattttgtgttttttactaCCAGTAAAGAGAATGTATAAAAGTAAGTTTCACATTAAATCTCTTGACCTGTGAGTAATTCTGTCCTTCTATAAAATAACAAGTGCTTTTAATCGTGGTTCTCTCTGACAGACAGTGCTGTGTGTAGTCTGTTTCTGTCTAGCCTGCTGTCTGCTTACTAGTGCTGCTATGGACCTAAAGGGAACTTTTATTTTCAACCTACACAGACTGTGAATATTGAATGTGGTAGATTTATTCAGACAGTTAACTTTGAAGCATTCCATTACTAACTCGACATGCACTGGAAACAGATGCCTtacttgtgttgttttttgaaaaagggAGAGCAGTTCTATTACAGTAATGCGTGAATGTTTACATTGTTACCCAAGTGTTTTAACTTTTCTACTGACTTGTATCTCTATTTTTTAGAATGAATTCTCTTGTATGTAAATGCTGCCATATACTAGTTACTGTGTGTAGCATTCGTGTAaataatgtatacatttttaggCTCTTATACTAAGAGTCtcgattcctt
>XM_039823555.1
CTCTCCCATTGGTCCACACCCCGGCTGACTGCACGAGAACAGGGGAACTTTTGCCGTGAACAGGCAGATGAGTTCAGTGTGTGAGTTTGGCCGTCTGAcaacaagtgttttttttccgcGGAGAACTGTTTCACAGCACcaaggagagagaggcagctgCTCACTTTAAAATATAACCTAAGTATCAAAGTAATGACCGCCACAACCTGACTTATCATTTAAGAGAATACCTGGTCGTCCGTTGCGGTGTTTTGTGTCCCGGGTGCGTCGTGAGTAGACTAATTAGTTGATTCGCATCACCCGGCAATTCCCGGTTCAATCTGCAGGGAAACCTGGCCAGAAGTCGCCAGGTGGACGGCGACAAAGGCTCCTCGTGTGTTCGGCGTTTCGACTCTTCCGTAACTCCGCTTAACTTGACTACACCTGCCCCGACATGTACAGCATGATGGAACACGAGCTGAAGCCAAGCGGCCAGCCGCCTAATCACCAGACCTCCCAGGGAATGTCGCCAATCACCGGCAACATGACCGGGGGCATGGGCGGCAATGGCAACTCTCACCCGGGCTCCAAAACGGCATGCGCACCCGGAGTCGACCCCATGGATAAAGTCAAGCGGCCCATGAACGCCTTTATGGTCTGGTCCAGGGGACAGAGGCGCAAGATGGCCCAAGAAAACCCCAAAATGCACAACTCCGAGATCAGCAAGCGGCTGGGAGCGGAGTGGAAACTCCTGACCGACGCTGAGAAGCGGCCTTTCATCGACGAGGCCAAGCGGCTCCGGGCGGTCCACATGAAGGAGTACCCCGACTACAAGTACAAGCCCCGCCGCAAGACCAAGCCCCTGCTGAAAAAGGACACTCAGATGGGCAAGTACCCACTGTCAGCGGGCAACCTGCTGGCGGCGGCGCAGGGCCAAGGTGGTAGTCCGAGGATGGACAGCTACGGCTGGGGCCCCGCCGGGGGGTACGCCGGCATGCAGGGCGAGGCGCTCGGCTACACACAGCAGCTCCACCGGTATGACCTGTCAGCGCTCCAGTACCCACCTTCAATGACGGCAGCACAGACGTACATGAACGGAGGCAACTCGTACAGCCCCATGTCCTACAGCAGCAGTCCCCAGCAGCACAGCCCCGTCACCATGTCCATGGTGAAAGCGGAGCCGGTGTCCCACTCGCCCCCGACGGGGACGCCCAGCCACCACCGGGGCCCTCTGCAGGGCGACCTCAGGGACATGATCAGCATGTACATCCCCGGCCCCGGGGGGGACGCCGGGGACCCCACGGCAGCACAGAGGGGCTACACCAGTGTCCAGCAGCACTACCTCACCGGGACCGTCCCACTCACACACATCTAGGACTGGAAGTGGGAGccgggggggatgggggggtgggggggtgaaCTGAGTGGGCGGAACAGAAATGCTCACGATGCACAGCTGGCTGGACAGGAGATGGGAGTCTGTGGGGGGGGACTTTAGACCGGCAAAGCAAAGAGACGTAAGACGTGAAGGAAAacccatttcctgcattcagtCTGAGTTGAGATGTGCCTGCAGTTACAGACGCACAAGAACCGACGACATTTTTATTCACTATTCATAGTTTTTCTACCTCTTTGGTGCCCCATCAGTTAAGATAAATGCCACCCGCTCCCACCAACCACCACCTGTACCCCCCCACCGCCGCTGACTGCTCTCCAGGAAGGACTGCAGCGAAGACAAGGGGCCACGTCTGTTTATTGTGTACATATAAGGAAATGTTTGTCTTattttttctgtcctcttttagactcctttttttttttttaaataccactTTAAACACTTGAGACCCTGGCACTCATGAGCCTTCCACCATACCCAGCAAGTGGCTGGGGGGAGGGCAGggggcggaggaggaggagctgttTGACCACGGAGCCAGTCCCCGCCGCCTGCAGCCACAGCACAGAGACACCTGTCCTGGCAACCATGTTTGACAGATCCCAATCTCTCAGCCGGTGACGGACCAATCACCTGAGCTGAAGTGCTCGGGTTGTCCTGATGTGTGGGCGGAGCCAGGGGGCCGGCAGGGGGAGAATGGGAAGGAAATGCACAACTTGAATGATgagctttttctttatttttttttcttttaacaaactCTTTGTGCCTTGGCTTTGCTTTAGTACTCTTgcatttttctgtgtttttttttttttaattttttttttaattttttttaacctgctgAAATCTAGTTGGATGACATGGGGAACCTCCCCCCCTGTTGGACAATCAACACTGCATCCACAGGAACTGAACAGAACACACTGGCTTCTATGATCTGTGGTGTCGCTAAATCCCGTTTCAGTAGGCCTGTAGTGTCCTCCGTCCCACCACACCACTGCTGGTTTTGCTGCCTGTATGAGTTTGATTTGCTGTATTAGTTTTAGATTTGATCTGTTGATATAAATGTTAAGATGCGTTGTTCTGGAGTCGCTCTGTGTGTTCATTGTCACTTTGCTCTAGGCAAgagttgtattttattttttatttttttttggctttttcagtaagtgaatgaaattaaatttgaaatgctgcatttcagttgttttattccaaacgGCAGATTAAGACTTGCAAATTATGTCTTCCACCAAGTAAACTGGATtggcaaa

Function

NR:

description
transcription factor Sox-19b-like

GO: NA

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
TU191040 False 998 lncRNA 0.37 1 6308898 6309895
XM_039823555.1 True 2661 mRNA 0.53 2 6309459 6315817

Neighbor

gene id symbol gene type direction distance location
tm4sf21b NA coding downstream 65229 6237573 ~ 6243669 (-)
trappc14 LOC104941436 coding downstream 123274 6158858 ~ 6185624 (-)
trnas-uga_22 NA coding downstream 279976 6028841 ~ 6028922 (-)
serpine1 serpine1 coding downstream 303680 5998118 ~ 6005218 (-)
vgf NA coding downstream 341470 5959440 ~ 5967428 (-)
eif4a1a LOC107098142,LOC103365478,LOC100693841,LOC103148870,LOC102238331,LOC101477102 coding upstream 15871 6331688 ~ 6340737 (-)
LOC120573734 NA coding upstream 19677 6335494 ~ 6335632 (-)
LOC120573735 NA coding upstream 20804 6336621 ~ 6336759 (-)
senp3b LOC104962536 coding upstream 27812 6343629 ~ 6361111 (-)
LOC120573386 NA coding upstream 50154 6365971 ~ 6367776 (-)
G141613 NA non-coding downstream 42315 6266151 ~ 6266583 (-)
G141612 NA non-coding downstream 42873 6265440 ~ 6266025 (-)
G141601 NA non-coding downstream 151485 6156052 ~ 6157413 (-)
G141470 NA non-coding downstream 316671 5989895 ~ 5992227 (-)
G141468 NA non-coding downstream 337511 5970935 ~ 5971387 (-)
G141667 NA non-coding upstream 140122 6455939 ~ 6511995 (-)
G141683 NA non-coding upstream 242481 6558298 ~ 6645212 (-)
G141688 NA non-coding upstream 261360 6577177 ~ 6578755 (-)
G141741 NA non-coding upstream 1079342 7395159 ~ 7462473 (-)
G141773 NA non-coding upstream 1202448 7518265 ~ 7518467 (-)
LOC120572220 NA other downstream 77601 6221971 ~ 6231297 (-)
gal3st4 gal3st4,LOC104939968 other downstream 88638 6177921 ~ 6220260 (-)
G141439 NA other downstream 465752 5743559 ~ 5843146 (-)
G141400 NA other downstream 708436 5596958 ~ 5600462 (-)
cd99l2 cd99l2 other downstream 725903 5560026 ~ 5582995 (-)
LOC120572256 NA other upstream 37647 6353464 ~ 6371100 (-)
tbc1d14 tbc1d14 other upstream 60155 6375972 ~ 6416457 (-)
LOC120572295 rasgrp2,LOC104942268 other upstream 1333155 7648972 ~ 7703618 (-)
fcer1g NA other upstream 1466094 7781911 ~ 7787667 (-)
LOC120573451 NA other upstream 1525104 7840921 ~ 7937490 (-)

Expression


Co-expression Network