LOC120573013


Basic Information

Item Value
gene id LOC120573013
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 31655795 ~ 31879818 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU200553
CCCCTGACACTTCAGCTCCGCCCCCTGACACCACAGACCCACCAACCTCTGCAGCTCCGCCCCCTGACACATCAGCTCACCCCCGGCCTCAGACCCCTCCCCTTTGTGATCAGACTGGTCGTCCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTCTTTATATCGacacagagaaacagGAAACCTGCCTGTCTCCGTGTTGATGACCCCTCCCACCCAGGCTGAGGAGGGATTGGATGAAGActatgatgatgtcatcactgctGTCACCACAGAGCATCTCTTCTGAACTGATCTGAAAAGCTCAATTGTTCTCATAGATTAGAAAGAGTGGAAGCCCCAGAAAGCTTCCCTGTGGATCTCCACATGTTCTAGTTTGACCTGTAGATGGAGGATGTTAACCAATTTAGTTTTTAGTCCAAAGATTTGCGATGAAAAGAGTTACACGTCAAGCTACTTGTAATGCTCCAGTCCGCGCGCGTTTTGAAACCTGTTAGTTTACACCAGTGAGATCAGACGGTGTATCCTCTGCATTGAGATGACTCTGGGCGTTGCTGAGCCTCCGTCTAAAAATTCTGCCATTTCCAACAGCTGACAGTTTgaaacatagaaataaaatagatCATTTCCTTTTATAGTTTGCAGCTGATTTGACCATTCCAAAACCAGCCTCTGAAAACGTAACCAGCTGAGTCCGCAGTGACACCATCAGCTTGTTTTAGTCGAGCGCGAAACGGACCGCCCAGAAGTAAAGGTTTCTTCTTGTTGCAAACTTTGCTCTGAACTGGACTTTAGTAGCAGATAGTTGTTCAGGTTCTGCTGTTAGTCGTGTTGTTGTTCATGTCTTTTTAGATGTCAAGTTTTAAATCTCTTcagatcaaataaaataaaatgatgagcATCA
>TU200557
CTTGTGATCAGACTGGTCGTCCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTCTTTATATCGACACAGGGCCACAGGAAACCTGCCTGTCTCCGTGTTGATGACCCCTCCCACCCAGGCTGAGGAGGGATTGGATGAAGACGATGATAATGTCATCACTGCTGTCACCACAGAGCATCTCTTCTGAACTGATCTGAAAAGCTCAATTGTTCTCATAGATTAGAAACAGTGGAAGCCTCAGAAAGCTTCCCTGTGGATCTCCACATGTTCTAGTTTGACCTGTAGATGGAGGGTGTTAACCAATTTAGTTTTTAGTCCAAAGATTTGCGATGAAAAGAGTTAAACGTCAAGCTACTTGTAATGCTCCAGCCCGCAGCGTTTTGAAACCTGTTAGTTTACACCAGTGAGATGAGACGGTGTATCCTCTACATTGAGATGACTCTGGGGTGCTCGTTGAGCCTCCGCTAAATTTCTGCCATTTCCAACAGCTGACAGTTTgaaacatagaaataaaatagatCATTTCATTTCTATAGTTTGCAGCTGATTTGACTGTTCCCAAACCAGCCTCTGAAAACATAACCAGCTGAGTCCCAGTGACACCATCAGCTTGTTTTAGTCGAGCTGAAACGGTTCTTGGGAAGTAAAGGTTTCTTCTCATTGCAAACTTTTGCTCTGAACTGGACTTTAGATGAAGATAGTTGTTCAGGTTCTGCTGTTAGTCGTGTGGTTGTTCATGTCTTAGATGTCAAGTTTTTAATCTCTTcagatcaaataaaataaaatgatg
>TU200558
CATCAGCTCCACCCCGGCCTCAGACCCCCTCCCCTTTGTGATCAGACTGGTCGTCCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTCTTTATATCGacacagagaaacagGAAACCTGCCTGTCTCCGTGTTGATGACCCCTCCCACCCAGGCTGAGGAGGGATTGGATGAAGActatgatgatgtcatcactgctGTCACCACAGAGCATCTCTTCTGAACTGATCTGAAAAGCTCAATTGTTCTCATAGATTAGAAAGAGTGGAAGCCCCAGAAAGCTTCCCTGTGGATCTCCACATGTTCTAGTTTGACCTGTAGATGGAGGATGTTAACCAATTTAGTTTTTAGTCCAAAGATTTGCGATGAAAAGAGTTACACGTCAAGCTACTTGTAATGCTCCAGTCCGCGCGCGTTTTGAAACCTGTTAGTTTACACCAGTGAGATCAGACGGTGTATCCTCTGCATTGAGATGACTCTGGGCGTTGCTGAGCCTCCGTCTAAAAATTCTGCCATTTCCAACAGCTGACAGTTTgaaacatagaaataaaatagatCATTTCCTTTTATAGTTTGCAGCTGATTTGACCATTCCAAAACCAGCCTCTGAAAACGTAACCAGCTGAGTCCGCAGTGACACCATCAGCTTGTTTTAGTCGAGCGCGAAACGGACCGCCCAGAAGTAAAGGTTTCTTCTTGTTGCAAACTTTGCTCTGAACTGGACTTTAGTAGCAGATAGTTGTTCAGGTTCTGCTGTTAGTCGTGTTGTTGTTCATGTCTTTTTAGATGTCAAGTTTTAAATCTCTTcagatcaaataaaataaaatgatgagcATCA
>XR_005641587.1
ATCTCCACTTTCATCATGGTGTCTTTATATCGacacagagaaacagGAAACCTGCCTGTCTCCGTGTTGATGACCCCTCCCACCCAGGCTGAGGAGGGATTGGATGAAGACGATGATAATGTCATCACTGCTGTCACCACAGAGCATCTCTTCTGAACTGATCTGAAAAGCTCAATTGTTCTCATAGATTAGAAACAGTGGAAGCCTCAGAAAGCTTCCCTGTGGATCTCCACATGTTCTAGTTTGACCTGTAGATGGAGGGTGTTAACCAATTTAGTTTTTAGTCCAAAGATTTGCGATGAAAAGAGTTAAACGTCAAGCTACTTGTAATGCTCCAGCCCGCAGCGTTTTGAAACCTGTTAGTTTACACCAGTGAGATGAGACGGTGTATCCTCTACATTGAGATGACTCTGGGGTGCTCGTTGAGCCTCCGCTAAATTTCTGCCATTTCCAACAGCTGACAGTTTgaaacatagaaataaaatagatCATTTCATTTCTATAGTTTGCAGCTGATTTGACTGTTCCCAAACCAGCCTCTGAAAACATAACCAGCTGAGTCCCAGTGACACCATCAGCTTGTTTTAGTCGAGCTGAAACGGTTCTTGGGAAGTAAAGGTTTCTTCTCATTGCAAACTTTTGCTCTGAACTGGACTTTAGATGAAGATAGTTGTTCAGGTTCTGCTGTTAGTCGTGTGGTTGTTCATGTCTTAGATGTCAAGTTTTTAATCTCTTcagatcaaataaaataaaatgatgagcATCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU200553 True 921 lncRNA 0.46 3 31655795 31879818
TU200557 False 807 lncRNA 0.43 2 31793125 31879719
TU200558 False 853 lncRNA 0.45 3 31655795 31794099
XR_005641587.1 False 768 lncRNA 0.42 2 31793116 31794016

Neighbor

gene id symbol gene type direction distance location
LOC120572747 NA coding downstream 31982 31435815 ~ 31623813 (-)
LOC120572776 NA coding downstream 104237 31506583 ~ 31551558 (-)
LOC120572887 NA coding downstream 401556 31245793 ~ 31254239 (-)
LOC120572825 NA coding downstream 433028 31220588 ~ 31222767 (-)
LOC120572930 NA coding downstream 529545 31109431 ~ 31126250 (-)
LOC120572803 NA coding upstream 501935 32381753 ~ 32419579 (-)
LOC120572804 NA coding upstream 560830 32440648 ~ 32448330 (-)
LOC120572800 NA coding upstream 596908 32476726 ~ 32486353 (-)
LOC120572810 NA coding upstream 772487 32652305 ~ 32662810 (-)
LOC120572789 NA coding upstream 1105704 32985522 ~ 32995763 (-)
LOC120573032 NA non-coding downstream 21150 31632948 ~ 31634645 (-)
G148299 NA non-coding downstream 238968 31414749 ~ 31416827 (-)
G148295 NA non-coding downstream 252281 31402663 ~ 31403514 (-)
G148286 NA non-coding downstream 277231 31368935 ~ 31378564 (-)
G148287 NA non-coding downstream 280739 31373546 ~ 31375056 (-)
LOC120573055 NA non-coding upstream 19022 31898840 ~ 31899802 (-)
G148360 NA non-coding upstream 44565 31924383 ~ 32342316 (-)
G148362 NA non-coding upstream 53176 31932994 ~ 31945388 (-)
G148312 NA non-coding upstream 69501 31949319 ~ 32401325 (-)
G148313 NA non-coding upstream 70661 31950479 ~ 32344226 (-)
LOC120572919 NA other downstream 599410 31046646 ~ 31056385 (-)
LOC120572909 NA other downstream 788405 30800809 ~ 30867390 (-)
LOC120572603 NA other downstream 824465 30829613 ~ 30831330 (-)
LOC120572891 NA other downstream 1145769 30497065 ~ 30510026 (-)
LOC120572884 NA other downstream 1180912 30470495 ~ 30474883 (-)
LOC120572607 NA other upstream 252518 32132336 ~ 32375549 (-)
LOC120572814 NA other upstream 723680 32603498 ~ 32811604 (-)
G148453 NA other upstream 772738 32652556 ~ 32700405 (-)
G148472 NA other upstream 851262 32731080 ~ 32755361 (-)
G148509 NA other upstream 951858 32831676 ~ 32962233 (-)

Expression


Co-expression Network