lratb.1 (LOC101070953,LOC108248302,LOC106910222,LOC103149051,LOC103367949,LOC106949946,LOC107082284)


Basic Information

Item Value
gene id lratb.1
gene name LOC101070953,LOC108248302,LOC106910222,LOC103149051,LOC103367949,LOC106949946,LOC107082284
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38644566 ~ 38671813 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU203245
CTCTGCAAGCGCGCCACCGTCCGCGTGGACTCCGTGGAGGACTTCGCGTACGGCGCCGGGATCCTGCTCAACGCCATGGACCGCGCGGTGCTCCGGAGCGCGCTGCCCGGGGAGGAGGTGGCCCGGCGCGCGGAGAGGCTGGTCGGCGCCGTGTCCTACAGCCTGCTGTGGAACAACTGCGAGCACTTCGTCACCTACTGCCGCTACGGGGCCGCGCAGAGCCTGCAGACCGACCAGTTCTGTGAGTGGCTGAAGTCGCTGATCCGGGACCGGCGAACCGTTGTCCTGTCGGCGCTGCTGGGACTCCTGTCCATGTCGTGTTTGGGAATCTCGCCCAGCACCACCGTGCCCGCCCTTCTCGTCCCCTTCACCCTGTGGATGGTCAGCTAGAAGCTCCGAGATTCAGGCGTTGGAGCGCCACCGCTGGTTCAAAAACGGGCTTGAGCCGCCATGTTGGAAGACTCACAGACAGGATGTTGTCATCTGCAAACAAGTTGACCTGGCGTACTACATTTTTAATGCTAAAAACCAGACCCAGACACCATTtgttttaggctacatttacatcgctacATTGGGGTTTTTAAGCAGAGTTTTCAGCCAAAAGGGATCTCCGTTCACGCAAGTgttttttagctccagtagaagaactaatcttcgtttaaattaacacaacacaaaccaaaatatctcatcaacattctggtatactgggcattagtctcgcattgccagaccttcttccacagcgctgcggaggagggtctggctagtccacacagcattcctggatgggagaaaaacgtgctctggtttattggcatttctttcaaccaatcacaatcgtcgtggtgccacggtgcctctgcaaaatagcctcgggaaggaacttgttttggtggaacatgtgtacgttgtAGAAATCTActgggtttagaataagaatgtcctgtagcctgggatggcctcgctgtctcctcctgtctggcatgtgtaagataagacgtgttcaaatttagtggagcaaaagtgctcctgATGTGTTTGATAAACATTcggaacagaatgcacctatATGAAATATCTcaaaggaacagacaatcttTAGACcgtgagagaagaagagaatgagCGCGATCCCAAGGCTAGCGCGCAACTTCGCTATCTTCTCGGAGACACAAAGTCTGAGTATTCATTTcctggtctgcctttcaacgaacacatAATTAAAGGGGACAACGTGAGAAGTGACCGATCGAGTCAAAAAGACTCTGGCCATTTGAGCCGGAGTAGAATCGGTCGCATCTTTTCCTAcaacgttcaaaagtagtttttagtagtgcgagagaaaactcagattggacagataaccagagtcctcacaaatccaccggaggttagaacgccaacacagagagagacgaaAGGTGACGGATATCTGGTGGAatttgccatggtaacgttggtagctttagtctcagagaacgagacgccatgaccaatgaaaggagaaagaaacgttggcgtcagtgtcggtgttgccaaagg
>XM_039821286.1
GCTGCTGGTGTTGAATGACAGGAGAAAGATGAGCTGTGTGATGAAGGGACCCCGACTGAGCTGCAGGAAAAACAGGCGACTGAGGGGAATGACGTCACGCagccctccccctcccctcccctcccctccgtcTCCAAAGTTTCCCCTAAAGAAGGAGAACCTctccagagaggagagagggaggaccGAGGCAGGACGGAAACCAAACTTCTGCTTCTCcctcttctttttcctttcttttttcttttggtagttttcttttttctctctctttctgtatttTTGGGTCATTGCTTAATTTTTTGCAGTGATGCTGGACACGCTCACCTTCCTCCTGGAGAAACTCTTCCTCCTCGCGCACATCAAGCTGTCCAGCCTGCTGCCTCCGCTGGGCGGCAGAGCCCGCGCCGAGCAGCCGCTCGCCAGGCGCCCCGAGCGGGACGAGTGTCCTCCGGCGCAGCCCGGCGGCCCTCCTCCGCCGAAGTTCCAGCGCGGGGACCTGCTGGAAGTCCCGCGCACTCTCTTCACCCACTTCGGCATCTACCTGGGCGACAACCGGGTGGCGCACCTCATCCCGGACATCCTGCCGTCGCTGACCGCGGACAGCCGGCACATCCAGGAGACGGTGACGAACACGCGGCTGGTGCTCGGGGTGCTCTGCAAGCGCGCCACCGTCCGCGTGGACTCCGTGGAGGACTTCGCGTACGGCGCCGGGATCCTGCTCAACGCCATGGACCGCGCGGTGCTCCGGAGCGCGCTGCCCGGGGAGGAGGTGGCCCGGCGCGCGGAGAGGCTGGTCGGCGCCGTGTCCTACAGCCTGCTGTGGAACAACTGCGAGCACTTCGTCACCTACTGCCGCTACGGGGCCGCGCAGAGCCTGCAGACCGACCAGTTCTGTGAGTGGCTGAAGTCGCTGATCCGGGACCGGCGAACCGTTGTCCTGTCGGCGCTGCTGGGACTCCTGTCCATGTCGTGTTTGGGAATCTCGCCCAGCACCACCGTGCCCGCCCTTCTCGTCCCCTTCACCCTGTGGATGGTCAGCTAGAAGCTCCGAGATTCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106608435, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU203245 True 1548 TUCP 0.51 2 38644566 38667971
XM_039821286.1 False 1060 mRNA 0.63 3 38645709 38671813

Neighbor

gene id symbol gene type direction distance location
LOC120572654 rbm46,LOC102795526 coding downstream 17262 38606289 ~ 38627304 (-)
LOC120573401 NA coding downstream 78917 38561962 ~ 38565649 (-)
LOC120573391 LOC106532721,LOC108250468 coding downstream 157197 38475763 ~ 38487369 (-)
LOC120573402 NA coding downstream 305807 38285892 ~ 38338759 (-)
LOC120573407 NA coding downstream 442222 38199809 ~ 38202344 (-)
LOC120572225 LOC104940940 coding upstream 63371 38735184 ~ 38743390 (-)
cfi NA coding upstream 121749 38793562 ~ 38816682 (-)
LOC120572318 LOC103365258,LOC100696033,LOC101477093,LOC102302035 coding upstream 156747 38828560 ~ 38866782 (-)
LOC120572656 NA coding upstream 210425 38882238 ~ 38889171 (-)
LOC120572319 LOC102301736,LOC102790445,LOC102077377 coding upstream 217082 38888895 ~ 38899886 (-)
G150196 NA non-coding downstream 31511 38612247 ~ 38613055 (-)
G150169 NA non-coding downstream 73880 38549972 ~ 38570686 (-)
G150170 NA non-coding downstream 143184 38497665 ~ 38501382 (-)
LOC120573413 NA non-coding downstream 150938 38491947 ~ 38493628 (-)
G150057 NA non-coding downstream 186972 38455011 ~ 38457594 (-)
G150202 NA non-coding upstream 7292 38679105 ~ 38679480 (-)
G150193 NA non-coding upstream 18375 38690188 ~ 38691776 (-)
G150194 NA non-coding upstream 20032 38691845 ~ 38694836 (-)
G150203 NA non-coding upstream 28014 38699827 ~ 38700520 (-)
G150191 NA non-coding upstream 31413 38703226 ~ 39064722 (-)
LOC120572655 NA other downstream 8973 38561269 ~ 38635593 (-)
LOC120572653 LOC102793922,LOC108250468,LOC103389793,LOC103129600,LOC106908923,LOC101466812,LOC106943038 other downstream 103396 38487094 ~ 38541170 (-)
G150174 NA other downstream 111266 38528917 ~ 38533300 (-)
G150012 NA other downstream 366319 38246640 ~ 38278247 (-)
LOC120573395 NA other downstream 465086 38155598 ~ 38179480 (-)

Expression


Co-expression Network