pygmb (pygm,LOC106531364,LOC100706889,LOC107384765)


Basic Information

Item Value
gene id pygmb
gene name pygm,LOC106531364,LOC100706889,LOC107384765
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4332263 ~ 4351683 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822737.1
GTGACATATAATAGGCTGGGCCGTCACATCCCAACGGCTGTCTGTGTCCAGAGGAGAGAGTCAGAAGAAGAGTGGGCAGGCTGCCGGGTGTAATTTAACTTGACGTTCAGTACAAACTAGACATAAACGGGAGTAAGCATGGCCAGGCCGCTGACGGACCAGGACAAGAGGAAGCAGATCTCGGTCCGAGGGCTGGCCGGGGTGGAAAACGTTACTGACCTGAAAACTAATTTTAACAGGCACCTCCATTTCACCCTGGTTAAAGACCGAAATGTGGCCACCAAACGGGACTACTACTTTGCCCTGGCCAACACAGTCCGGGACTACCTAGTTGGCCGCTGGATCCGGACGCAGCAGCACTATTATGAGAAAGACCCCAAACGTGTCTACTACCTCTCCCTGGAGTTTTACATGGGCCGGACTTTGCAGAACACTATGGTGAACCTTGCCTTGGAGAACGCCTGCGATGAAGCCACATACCAGCTGGGCCTGGACATGGAGGAGCTGCAGGACATCGAGGAAGATGCTGGTCTAGGCAACGGTGGGCTGGGTCGTCTGGCTGCTTGTTTCCTGGACTCCATGGCCTCTCTGGGTCTGGCAGCTTATGGATACGGCATCCGCTACGAGTTCGGCATCTTCAATCAGAAAATTGTCGACGGCTGGCAGGTGGAAGAAGCTGACGACTGGCTACGTTACGGTAACCCCTGGGAGAAGGCTCGCCCTGAATACATGCGCCCAGTCCACTTCTACGGACGAGTGGAACACACAGCTGACGGAGTGAAGTGGGTCGACACACAGGTGGTTCTGGCTCTTCCCTATGACACCCCAGTCCCCGGCTACAGGAACAACATCGTCAACACCATGAGACTGTGGTCTGCTAAGGCCCCATGTGACTTTAACCTCAAAGACTTTAATGTTGGTGGCTACATTCAAGCCGTGCTGGACAGAAATCTGGCTGAGAACATCTCCAGGGTTCTCTACCCCAACGACAATTTCTTTGAAGGGAAGGAGCTGCGTCTGAAGCAGGAGTACTTTGTTGTAGCAGCAACTCTTCAAGACATCGTCCGTCGATTCAAAGCCTCCAAGTTTGGCTCCACAGAGTTTGTGCGACTAGACCTTTCTACGCTGCCAGACAAGGTGGCCATCCAGCTGAATGACACCCATCCTGCTATGGCCATCCCTGAGCTGATGAGGATTCTGGTGGACGTTGAGAAACTCACCTGGGAGAAGGCCTGGGACATCGTGGTTCGTACCTGTGCCTACACCAACCACACCGTCCTGCCTGAAGCCCTGGAGCGCTGGCCCGTCGACCTTTTCCATAACCTGCTGCCGCGGCACCTGGAGATCATCTACGAGATCAACAGGAGGCACCTGGAGCGCATCACCAAGCTTTACCCTGGAGATCTTGACCGTCTGCGCCGGATGTCCCTGATTGAGGAAGGGGACGTCAAGAAAATCAACATGGCTCACCTGTGCATTGTGGGATCTCATGCTGTCAACGGAGTGGCCCGCATCCACTCTGAAATCATCAAAGACACTGTGTTCAAGGATTTCTACGAAACAGACCCTGAAAAGTTTCAGAACAAGACCAACGGCATCACGCCCAGGCGCTGGCTGGTCATGTGCAACCCTGGCCTGGCTGAGGTCATCGCAGAGaggATTGGTGAGGACTACATCCGTGACCTGGACCAGCTGAAGAAGCTTCTGGACTTTGTGGACGATGACTCCTTCATTCAGGATGTTGCCAAAGTCAAACAAGAGAACAAGATGAAGTTTGCTGCCTACCTTGAAGAGCAGTACAAGATGAAGATCAACCCAAACTCCATGTTTGATGTCCATGTGAAGAGGATCCACGAGTACAAGAGACAGCTGCTCAACTGCCTGCACATCATAACGCTGTACAACCgAATCAAGAAGGAACCCAACAATTCATGGACCCCCAGGACCATCATGATTGGAGGAAAGgcgGCTCCAGGTTATCACACTGCCAAGATGATCATCAAGCTGATCACATCAATTGGTGACATTGTCAATAATGACCCTGTGGTGGGCGATCGCCTCAAAGTCATCTACCTGGAGAACTATCGGGTCACGCTGGCTGAAAAGGTCATCCCTGCATCTGACCTGTCGGAGCAGATCTCCACTGCCGGTACTGAGGCCTCTGGCACCGGCAACATGAAGTTCATGCTGAACGGGGCTCTCACCATCGGCACCATGGATGGAGCCAACGTGGAAATGGCAGAGGAAGCTGGGGAGGAGAACCTCTTCATCTTCGGCATGAGGGTGCCCGATGTGGAGGCTCTGGACAAGAAGGGCTATGACGCTGCGTCGTACTACCGCCGTATCCCCGAGCTGAAGCAGGCGATGGACCAGATATCCGGAGGCTTCTTCAGCCCCAGCCAGCCCGACCTCTTCAAAGACCTCGTCAACATGCTGATGAACCACGACAGGTTCAAGGTGTTTGCAGACTATGAAGACTACATCCAGTGTCAAGAGAAGGTCAGCGCGCTCTATAAGGACCCTAAAGAGTGGACCAAGATGGTGATCCATAACATCTCCGGCTGTGGTAAATTTTCCAGTGACCGCACCATTTCCCAATATGCCAGGGAGATCTGGGGCATGGAGCCCAGTTTGGAGAAGATCCCTGCTCCTGACGATCCTCGCTAAACCACATCTGCCTCCTACACCTTACCGTAGCTCACTGTGTGGTCCGACCACTGCAGAAGAACCCTGTAGCTTTTCACTGTGTACTGTGGCATTATTTCTTTTCACACATTACTCATCCCCACATCTGCCTCTATCACGGTAACATGTATTGAAGTGGGcttattcagaaactgtattcTGTATGTTCCCTCTGTGCACCAGCAACACATAGTCTCACTCTTGAGTAAAAACCTTGTATCTCCACGTAAGCCTTTCAGCAGTTAGGAAACAGCCTAGATTTCAACTTGGAATCATGGGATTTTTTAGTTGGcgttaaaacattaaagatatACTTCCTTATTTTGTGATAGTGCCCAATAGTTCTCCGATTATCCAAAGTTTACACACTGATGTTTAAAATTCTAGGTCCTAACATCAACTAGGAGCTGAGTGGAAAACCTTTTGAGTGCTATAACAAAATGAGGGACTATATCATTACTACAGTGATTCGAAACCCCAATTCTAACTACATTCCCCTTCTACTTCTGAGCCAATATGGCTACCAAAACCCAGCAAACATGCCAATAAACCTCACTATTGTTATGGTTCCAAACCAGCCCATGTCTTCCATGGAAGAGGGAAGGGCCACTCGGTGGTTACGGTGAACCACAGCCTCATAGCAGCACTGTGACTGGAACCATTTTCTCCATATTCCCCGCAGATTaacattcatattaatgtttcgTATTAAAAGACTTCCCCTGGCTGCCCGCTTAGTGTTGAATATATCCATTTATGTGTGTGATCAGTTTGCCTGCATGTTTGTGTCCGTCTCTTCCTAAAAGTGACCTTTGTTAGAAAAAACAAAGCCTTTTCTGCCTAAAACCTAAGTGACTGAATTAATCTTTGGAAGATGTGTGTATTCTGTGTtatagttttgtgtgtgtgtgtgtgtgtgtgtgtatatatataacatatgtGAGTCCATGATGTACTGTAACAACATGCTGTCCTGCTTCAGCTCTGGCATATGACTGTGGCGCTGCCTGCAGAGGCTGCAGAAAGAACCTTTCATTTCCCTCTCAGCCAGCGCGTTTCTTTTTTAGTCAATAAATGATCAAACTCAGCAA

Function

symbol description
pygm Predicted to enable glycogen phosphorylase activity and pyridoxal phosphate binding activity. Predicted to be involved in glycogen catabolic process. Located in extracellular exosome. Implicated in glycogen storage disease V.

NR:

description
PREDICTED: glycogen phosphorylase, muscle form

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822737.1 True 3776 mRNA 0.50 20 4332263 4351683

Neighbor

gene id symbol gene type direction distance location
slx1b LOC103361641 coding downstream 19397 4302645 ~ 4312866 (-)
ing2 ing2 coding downstream 72450 4256635 ~ 4259813 (-)
adam19a LOC108242304,LOC103148901 coding downstream 213879 3803986 ~ 4118384 (-)
LOC120573709 H2AFZ,LOC100694115,LOC102297571,LOC102200939,LOC101065890 coding downstream 874415 3455520 ~ 3457848 (-)
focad focad coding downstream 1079288 3166868 ~ 3252975 (-)
sf1 sf1,LOC104940820 coding upstream 1918 4353601 ~ 4368352 (-)
rbm4.1 LOC104952189,LOC103359711,LOC100708584,LOC102786441 coding upstream 17499 4369182 ~ 4373673 (-)
LOC120572314 LOC104952188 coding upstream 22507 4374190 ~ 4379514 (-)
map4k2 map4k2 coding upstream 30100 4381783 ~ 4433883 (-)
men1 men1 coding upstream 83922 4435605 ~ 4447350 (-)
G141042 NA non-coding downstream 12621 4318901 ~ 4319642 (-)
G141041 LOC103361642,LOC104959592,LOC105907194 non-coding downstream 16719 4314178 ~ 4315544 (-)
G140999 NA non-coding downstream 121493 4209167 ~ 4210770 (-)
G140997 NA non-coding downstream 267523 4064196 ~ 4064740 (-)
G140926 NA non-coding downstream 657800 3674091 ~ 3674463 (-)
G141109 NA non-coding upstream 126747 4478430 ~ 4482046 (-)
G141114 NA non-coding upstream 132055 4483738 ~ 4484782 (-)
G141115 NA non-coding upstream 134220 4485903 ~ 4486466 (-)
G141117 NA non-coding upstream 137617 4489300 ~ 4489504 (-)
G141123 NA non-coding upstream 162324 4514007 ~ 4526194 (-)
LOC120573533 NA other downstream 244 4321764 ~ 4332019 (-)
G141027 NA other downstream 56989 4274651 ~ 4275274 (-)
G141003 NA other downstream 176716 4154924 ~ 4155547 (-)
LOC120573530 NA other downstream 1189074 3139121 ~ 3143189 (-)
arsj arsj other downstream 1710163 2597834 ~ 2622100 (-)
G141145 NA other upstream 289812 4641495 ~ 4664198 (-)
G141159 taf6l other upstream 308938 4660621 ~ 4661111 (-)
peli3 LOC100695529,LOC102800049,LOC102202559,LOC103148873,LOC106956141,LOC107098130,LOC103480122 other upstream 421945 4773628 ~ 4829162 (-)
G141219 NA other upstream 606996 4958679 ~ 4960005 (-)
G141234 NA other upstream 748022 5099705 ~ 5100082 (-)

Expression


Co-expression Network