focad (focad)


Basic Information

Item Value
gene id focad
gene name focad
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 3166868 ~ 3252975 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823056.1
TGGTGTGTGACAGCTCGGTCTCAATCTGTTTTGGTCCTCGGTACTCGCCGTAGTTGCATGCGGGTTTGTTTGACGGAGGCTGGATGAATGAGGTTTACCAAGAGCAACACACCAACAGGCATGACCAGCAGATATGACGGAGAGTTTGAAGATAGGATTTGATTTCCCCAGCCCTGTCATACAGGCCCAGACGGTGAGACATCTTGTTGCTGCTGTGCTGAAGGAGAAAGGGCCAAATGGGCAAATCACCCAGTCCTCCACCCAGGGTCTAGCGTTGGAGGCTCTGTGGCAGCAGTGCTGCAGTGACTGCACGCTGGTGCGTTCAGCCGTCTGCGATGCCATTGTGCTGCTGGTGGAGCAGGGCCACGCAGACCTGCCCTACGTCCTCAACAGTGTCCTCAACCTCCTGCCCTCTGCTAGAAATGTCCAGGGGCTGATCAAGGTGATTGGACGGCTGCTCCAGATGCAGGCAGACCAAAGGGACAGAGAAACAGCCTTCACCTGTCCTTACTCCATCAGGAGCAGCCCTCACCCATACATCACTGCGCTGGAGCACCGAGCGGACTGCTGGCCAACCCTGCTGCTGGAGATTGATGACTTCATTCAGCAGGCTGCTGACAGAAATGAAGCGGTCTACGTCAGCATGCTGGCCCCCTTCCTGCGCTACCTGTACTGTGAACCTCAGAGGCAGACCCAGCACGCCCTCCTGCGCCACAGTCTCCTGCGGGTGCTGCTGCCCCCACAGCCAGGAACTGGGACGGTCCTGCAGAGCTCGACCGTGTCCgacagcctgctgctctgcctCTGTCAGCTGGTGCCACACATGCAGGTGGACAGTGTGGAGGCGGTGCTGGAGCTGTGCGGATTCCTGGGCGCTCTGCTCCAGGGTCTGGCCCCAGCCCCGGACCCCACCGCTGCCCTGGCCCCGGCCCCGGCCCCGGAGCATCGCTGGAGGAGCCAGAGGGTCGGGCTGCTGCTACAGCTGCTCTGTGCCTGCCAGCGCTGCCTCAAGTTAAACGGAGACTGCCGACCTCTTCTCAACGTGTTACAGCAGCTCCTACCTGCCTGCCAacagGAGCTGCCATTGGACGAGCTGTTGATGGGAGTGGCCATGCTCCTGCTGGAGGTCCCTGCAACACAGCAGACCAGCCTGCTCCGTCTGGCTCTGACTTTACAATGTGAGCAGGCTGAGCTGGCGCCCTGGCTGAGTCCTGTCCTGGTTCTCCCCGTGCTGCAGCTGCTGTCCTGCGCGGCCCTCAGCGAGCCGCTGGCCGACCGGCGCACACACAGCCTGAACCAGGACCTGGCCGAGCGCCTGCTgtgcagcattagcagcagggACACAGAGAAACCCCAGCAGTCCGGTCCACCATTGGCACTTCCCCTAACTTCCTGGTACAGCGAGCTCAGCGTGGCTCTATCCACACTGCGTAGAGTGGCAGATGACCCCGCGGcggcagctgattggctgctgtcGCTCAGCTCGGCGCTGTCGTCCAGCCAGAGCCAGCTCTGCTCCCTCAGCCTCATGGTGAGCCATCTGATCATCACGGCTCAGGAAGACGTTTGCCAGCTGGCTCTGAAGGCCAGCCAGACCATTGCTGCAGCCGAGCCCTGCCAGGTCCCTTCCCTTCTTCCTGTTCTGTTGTTCAAACTGGGAAAGGAAAAGAATCCAGCGCTAGCTCACGCTGTGCTGAACTGCCTGCCCAACCTCGGGACTCACAAGCTCTGTGTCCCCATGGTGCTGCAGACTCTCCACATGCTGGCCAGCGCCCCAAAGCTGAGAGCAGTGGCACTGCGCCTCATGACCGCTCTGTGGAAGAAACAGGACCGAGTGTACCCGGAGCTGCAGCGTCTGCTGGGCCAGCAGGACAGCAGGGTGGTAGTGGGGAGGGACTCCCAGTGGGAGCAGATCCTGGCCCGGGCCGCCTGCCTCAGGGACGTCTGCAGGGAGAGgccttaCCAGCATGGAGGCGACATGTTGGCTGCCATTACACTCACTCTGAACCAGTGCACCAGACCAGACATGGCAACCCCTGCTGCTCTCGCCCTGCAAGGACTACAGGAGCTGTGCCGGGCAGAGGTAGTGGACATCGTGTCAACATGGAGAAGTCTGGGCCCCGAGCTGAGCTGTGACTCGCGTCCGCTGATGGTCCGAGTCATTGCTGAACTTCTGGCTCTGGTTCCCCAGCTCACTGCCAAGTCAGAAGAATATGAGAAACTGACGGAGGAGGTGGTCAGCTTTCTCTGGAATTATGCTGTgagcaagGATGTGGAAGTGGCCAGCTGCGGCTACAGGGCTTTGGCAGATTTTCCTGAAGCGGTCCACACCATAAATCTTCTTCCTGAGGCGGCCCGACCAGCTGCAAAGCCCCCTGGAAATGACCAGGATGAAcaagggaaggaggaggaggaagaagagaaggatCTCTCCATCCCAGCTTCATCTTATGTGAAGCTGATGGCTCTCACCCCTGTCTCTGTTCTACCAGCCTTCGAGCTCTTCCTGACATCACTGGTGAAGCAGGAGATGAGCCAGATGCCACGGGGGGTGTACTTCTCTGCCCTGAGGGGGGGAAACCTGCGTTCAGACCAGGGTAAAACAATGGCAGGGATTCCCTCATTCATGCTGAAAACCTACGAGAAAAACAAGCAGCCTGGGCTGAAGCCTGGACTAGCAGcTGGACTGCTGCTCTGTTATGAGCTGCCTGTGCAGACGGACCGCGAAGGCAGACCGATCGATCGTTTCCTCTTGAGCCGCAGCCGCAGCTACCAGCAGACCTTGACAGCCCTCATTCATGAAGTGAACATCCAGCCGTCTGAATGGCACCGTGCTCTTCTCCTGCCCCAGGCCTGGCGAGGGTTAATGAGCCGAGCGTTCCACGCTGTCCTACAGGGTCGACGTGCTGATTTGGAGATGCAGCAGAAACAAGGCAAAGAAGAAGCACAGGAGCTGCAGTACAAACAACACTGTGCCTGGCTGTGGGCCAGAGATCAGGTGACAGACGTCATCAAAGCTGCTGCAAAGGACAGTCCTGTTGTCCAGGGGAACTCCATCCTGGCTCTGAGCGGCCTGGCTGCTGTCCTGGCTAAATATGAGAGCAACCTGCCTGCTGATAGCGACGGCAGCCTTGGGGCTGGCCCAGAGTTTGTGCCCACAGCCAGCTGGTTGGCCATGGTGCTCCACACCCTgctcagcatcagcagcagcagctgcaaggCCAGAGGACAAGTCTTCCCATGGTTCCTACATCGCTCCTACTCAGGGGAGAACACAGCGAGTGCCATCGCTCGCTCCTGTGCCAGCCTGGCGCTGTCCCTGCTGGTCCCGGTGCTGGTGGTGTGGCAGCGGGACAGTTTGGCCCAGGTCCTGTCTGCGCTGCAGGCCGGCCTGCCGGGCTCCCCCACCGCCGATGACTCCCAGGCTGTCCAGTTCCACTCGGGCCTGGCGCTCGGCATGGTGCTGTCCAgtctgcagcagcagcgccTGAGTGATGTCTCTGTGGACGCTGAGCTCCTCTCCAGCTCTCTGGACGCTCTGGAAAGTTGCTCCTTCAACCCCGACCTGGAATACAATACTGGCTGTATGTTAGGCCTGGCTCTGGTGCTCGCAGCTCTCTGCAGTAGTGGACAGACGAACCAACATGTCCGCGTCACCCAAACACTGGACAAACTTCTGTCCAACCTGCAGGACAGCAGTGGGCAGGGACGCTTGCTGCAGGAGGTCTTGGCGTACTCTGTGGCATGTGTGGGTGTCTCGGCCTTTAGCGGAGGCCTTATAGACGCTGCCAAGGCGGAGGAGGTGATGAGCACCCTGCGCACCCTGACTGAGGAGAGCCAACAGACTCCAGGCTTCTCCCTGGCTCTGGGCTTGGTGGTCCAAGGCCTGTCTGTGTCCGGCCATGGCAAAGCAGAGGACATCCATCCTCGTCTGCTGGCTGCTTGGATTAAGATCTTATTGGCCGAGGGTTGTCCCACTATGCAGCGGCTGGCGGCCGTCAACGGCCTGGTAGCTCTAGTAGGATCTGAGAGTTACCTCATCCAGAAAAGCAGAGAGCTGGAGCTTTCCTCCCAGCAGCAGAGCCGGCTGAACGAGGTCATTCGAGCCATCACACAGATCATATCATTCTCAGGAGCCATTGGTCTGCAGTCCAACAGTGCTTGTTTGGTTGGTCATCTGCATCTGGCCCATATGTCCAccagtcacagtcacacagcAGTTCCTCAGGATTTCAGTTACCTCTCAGAGAAAAGTCTCATCAGATCCATCATTGACTTCCTCACAGAGGCAGGAAAAAAAGGTCCAGAGTTTGCCCATCCAGCTGTGGTTAAGACTGCTCTGACTCCCCTGGCATCAGTTGGAGCCAGTTTCCAGTACCCGCCCATCAACTGGAGTGCCGTGCTGTCTCCTCTAATGAGGCTCAGCTTCGGAGAGGATGTGCAGCATCAGTGTGTGGTGCTGGCAGCGTGTCAGGCTCAGTCTTCTCAGAGTGCCGGCCTCTTTCTGGGCTCCTGGCTCTCACCCCCCCTTGTACACAGTCTCAGTTTCCAGACTCGGGCTCAGCTGTATGAGAGCCTGGGCCTGTGGATGAAGCATGTTGCTGAGGACAAGCTGCAGGTCCACATGGAGAGTCTGGGCCTGCAGCACTTTCAGGAGGAGTTCCGCCCCCAGCGTCGGTCCCTGTGCCGCTCCCTGCTGCAGGGCCTGGCTCAGGCCATGGCTCTCCCAAACCCCTCCAACAGCTGCTGGACCATCCTCTGCTCCAGCTCGGAGAAGATCTTCTCTCTGATGCCCAACCACATCCAGGATAATGAAGTGGATTTGTATGTGGGAATCGCCAAGTGTCTGTCTGAGATGTCGGATGCAGAGATTGAGCGAATCACACGAGTCACAGAGGCTCACATGGAGAAGACCTGCTTCGTCCTGGCTTACCTGACCTCCCAAGGCAGAGTTCCCCTGCTGGGCCTCAATGACGTCATCGCCGGGGTGCTCCATGGTTGGCCGAGCCGCAGAGTCGGCTGGCTCCTTCTGCAGACTTTTTACCAGTGTCGCCTGGCCACCAATCCCAATACAGGCGTTTTGAAACGAATGGAGTGGCTCCTGGAGCTGATGGGACACATCCGAAATGTTGCGTATGGTGCAACCCCAGTCACGTGTGGAGACACCAAACTGGCCACAGACTTCCTGTTTCAGGtttttgctgctgctgtagTTTCCTGGGGTGACCACTTCATGCCCCGCCTCCTTGGCATTAGGGCCAAGTGGTTCCCATGGCAACCTGACTCCAAGCCCCAGACTCTGCAACACAGTCTGTATGGTGAGGAGTCATTCACTGACCATGCCCTGCctcagtgcatgctgggaatgTCCCACAGCCTGGCTCAGCTGCTGGACAAAGAGCCCTGGAGCAGCCAGACACACAAGttcATAGACTGGCTCTTCAGCATCACAGAGGGTCCTGAACAGAATCTGTCGGCTGCAACAGTCAGCACAGCCAGAGCGGCCCTGTTGGCCCTCAAGTCCTCCGCTGAGTTCAAGAAGAAAGCTGTGTGGACCCGAGCATACGGATGGTAACCCAGAGGAGCCATGACAGACAACATAAACAGGTTCTTCACAAAAAGACAACTGGAGCTTAAACACCCTGAGACTGCGTCTGCCTGCTGGATGCAGAGATATCTCTGAATGTATGAGACTCACTGCAGCAACATGGACAAACTGTACGTTTAGGATGTTAAACAGAAACGGCAGCGCCTGCTCTACTTCAATCACATATGAAGACGTCATGAGGAATGTGCTCTGTCAAAACAACATATGACTATTAAAAGTTCATCAAATACAGGAAATA

Function

symbol description
focad Orthologous to human FOCAD (focadhesin).

NR:

description
focadhesin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823056.1 True 5846 mRNA 0.58 45 3166868 3252975

Neighbor

gene id symbol gene type direction distance location
c14h4orf54 NA coding downstream 38252 3117234 ~ 3128616 (-)
si:dkey-219e21.4 NA coding downstream 348209 2812555 ~ 2818659 (-)
pde5ab pde5a coding downstream 369337 2678945 ~ 2797531 (-)
LOC120572242 NA coding downstream 1144501 2019612 ~ 2022367 (-)
LOC120573473 NA coding downstream 1281181 1883902 ~ 1885687 (-)
LOC120573709 H2AFZ,LOC100694115,LOC102297571,LOC102200939,LOC101065890 coding upstream 202545 3455520 ~ 3457848 (-)
adam19a LOC108242304,LOC103148901 coding upstream 551011 3803986 ~ 4118384 (-)
ing2 ing2 coding upstream 1003660 4256635 ~ 4259813 (-)
slx1b LOC103361641 coding upstream 1049670 4302645 ~ 4312866 (-)
pygmb pygm,LOC106531364,LOC100706889,LOC107384765 coding upstream 1079288 4332263 ~ 4351683 (-)
G140842 NA non-coding downstream 13532 3152899 ~ 3153336 (-)
LOC120572441 NA non-coding downstream 256243 2908630 ~ 2910625 (-)
G140762 NA non-coding downstream 342250 2824313 ~ 2824618 (-)
G140761 NA non-coding downstream 342637 2822870 ~ 2824231 (-)
G140753 NA non-coding downstream 437249 2729281 ~ 2729619 (-)
G140855 NA non-coding upstream 27438 3280413 ~ 3433666 (-)
LOC120573362 NA non-coding upstream 66050 3319025 ~ 3321057 (-)
G140874 NA non-coding upstream 182085 3435060 ~ 3435360 (-)
G140875 NA non-coding upstream 182943 3435918 ~ 3436192 (-)
G140877 NA non-coding upstream 184410 3437385 ~ 3437606 (-)
LOC120573530 NA other downstream 23679 3139121 ~ 3143189 (-)
arsj arsj other downstream 544768 2597834 ~ 2622100 (-)
camk2d1 LOC100695450,LOC101472930 other downstream 593385 2454066 ~ 2573483 (-)
G140615 NA other downstream 1108677 2051481 ~ 2058191 (-)
LOC120573528 NA other downstream 1134362 1927132 ~ 2032506 (-)
G141003 NA other upstream 901949 4154924 ~ 4155547 (-)
G141027 NA other upstream 1021676 4274651 ~ 4275274 (-)
LOC120573533 NA other upstream 1068789 4321764 ~ 4332019 (-)
G141145 NA other upstream 1388520 4641495 ~ 4664198 (-)
G141159 taf6l other upstream 1407646 4660621 ~ 4661111 (-)

Expression


Co-expression Network