rnaseka (LOC101070669,LOC104937157,LOC103362101)


Basic Information

Item Value
gene id rnaseka
gene name LOC101070669,LOC104937157,LOC103362101
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5678216 ~ 5684661 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823382.1
AAACCATAAACCCGGAAACTTCCGGTGTTCGGTCACAGTCACCTGACCGAACAAGTGACAGAAGTTTGAGCAGCAGGTCAACTTTTGTTAGTTAACAGAACCAGAACCGAGTGTTACAATGCGTGGGTTGATTTGTGGACCAAAACTTGCCGCGTGTGGGATTGTGTTGAGCACGTGGGGGGTTATAATGCTGGCCATGCTGGGGATTTTCTTCACCACACATTCAGCAGTGCTGATTGAAGACGTGCCTTTTACAGATCAAGACATCCACCAAGAcgcgctttggaggagggtctgtcaAAGCGAGACTAAGAACAGTGAGACCTTCCTGCAGTTCTCCCGCTGCCCTCTCTGTCCCGCCCCCTCCCATCAGGCCACATCCGTTAGGATTGCAGCAGTAGGCGGTGCCGCGGCTTCGGCCTCTGGTCCCTGTAGCAGGCTGCTGCCACACGGGACGAGCAGACGCTGGAGGCTGGTATCAACCCTCCTCAGAGGATCTACGCCCTGTACAACCAGGTGGGATACAACTGCTTCATCGCAGCTGCTTTCTACATCCTGTTTGGATTCTTCTCCTGCTGCCAGATGAAGCTCAACAAGCGGAAGGTGA
>XM_039823383.1
AACTTCCGGTGTTCGGTCACAGTCACCTGACCGAACAAGTGACAGAAGTTTGAGCAGCAGGTCAACTTTTGTTAGTTAACAGAACCAGAACCGAGTGTTACAATGCGTGGGTTGATTTGTGGACCAAAACTTGCCGCGTGTGGGATTGTGTTGAGCACGTGGGGGGTTATAATGCTGGCCATGCTGGGGATTTTCTTCACCACACATTCAGCAGTGCTGATTGAAGACGTGCCTTTTACAGATCAAGACATCCACCAAGATATCAACCCTCCTCAGAGGATCTACGCCCTGTACAACCAGGTGGGATACAACTGCTTCATCGCAGCTGCTTTCTACATCCTGTTTGGATTCTTCTCCTGCTGCCAGATGAAGCTCAACAAGCGGAAGGAGTACCTGGTGCACTAGTGCCACCCGCTGGATGGAGGAGCTCCCAGAAGCACTCTGGCAGCAGGAGGCCGCGTTCGGGAGCTCGCAGCTCTTCTCTAATCACTGACTTCTGTCTCAGGGTTTAAAATTCCTAATCATAAACTacagtgggggtgggggggggagagagactgGCCGCTGTGTTGGGAGCAGATCGACGTTTTGCACCTTCATGTATTCAAGATGAGATTAATTCTACCTCTGAAGTGATGCAATGATTTGATTGTGGTGGTAAAAACTACCCACTGAAACGCTAATAGCTGTTGTTCTCCAGAGTCTCAGTGATTATTCTTGttaaaattgtttgtttttttaaaatctatactgtactgtacaataGAATGTATTTTTTGGTTATTGCCAGTATCAGTGTTTGGAATGTTAGTGTCATTAGATCTAGTTCTTTAGTTTCAGTGGACTTTTGTCTGTATGTTTTGAATGGTTGTCTTTATTCAAATGTCCAAGGTTGTAGTCCAGCATTCATTTCAAACATTAAAGATATGTGGAGTTA

Function

NR:

description
PREDICTED: ribonuclease kappa-A-like

GO:

id name namespace
GO:0009303 rRNA transcription biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004521 endoribonuclease activity molecular_function

KEGG:

id description
K19770 RNASEK; ribonuclease kappa

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823382.1 False 607 mRNA 0.54 4 5679826 5684661
XM_039823383.1 True 937 mRNA 0.45 4 5678216 5684645

Neighbor

gene id symbol gene type direction distance location
med11 med11,LOC102785859 coding downstream 57951 5616677 ~ 5620265 (-)
LOC120572332 NA coding downstream 255114 5418473 ~ 5423102 (-)
LOC120573316 acox3 coding downstream 342499 5319797 ~ 5335717 (-)
LOC120573313 acox3 coding downstream 433259 5213138 ~ 5244957 (-)
znf16l LOC103362116,LOC104940792,LOC101479721 coding downstream 558889 5114994 ~ 5119327 (-)
si:dkey-6n21.13 LOC104944656,LOC104937154,LOC102297111 coding upstream 42975 5727636 ~ 5735182 (-)
si:dkey-6n21.12 LOC102198682,LOC106632892,LOC104937153,LOC101478675 coding upstream 56660 5741321 ~ 5757820 (-)
ache ache coding upstream 100147 5784808 ~ 5821779 (-)
LOC120573667 NA coding upstream 156756 5841417 ~ 5865750 (-)
LOC120573619 NA coding upstream 217263 5901924 ~ 5921871 (-)
G141394 NA non-coding downstream 93690 5584162 ~ 5584526 (-)
G141259 NA non-coding downstream 469756 5208237 ~ 5208460 (-)
G141233 LOC104947167 non-coding downstream 600000 5077628 ~ 5078216 (-)
G141224 NA non-coding downstream 642019 5035502 ~ 5036197 (-)
G141222 NA non-coding downstream 655131 5022593 ~ 5023085 (-)
G141416 NA non-coding upstream 26773 5711434 ~ 5711716 (-)
G141467 NA non-coding upstream 285290 5969951 ~ 5970613 (-)
G141468 NA non-coding upstream 286274 5970935 ~ 5971387 (-)
G141470 NA non-coding upstream 305234 5989895 ~ 5992227 (-)
G141601 NA non-coding upstream 471391 6156052 ~ 6157413 (-)
G141400 NA other downstream 77754 5596958 ~ 5600462 (-)
cd99l2 cd99l2 other downstream 95221 5560026 ~ 5582995 (-)
nat16 nat16 other downstream 203061 5424561 ~ 5475155 (-)
G141234 NA other downstream 578134 5099705 ~ 5100082 (-)
G141219 NA other downstream 718211 4958679 ~ 4960005 (-)
G141439 NA other upstream 58898 5743559 ~ 5843146 (-)
gal3st4 gal3st4,LOC104939968 other upstream 493260 6177921 ~ 6220260 (-)
LOC120572220 NA other upstream 537310 6221971 ~ 6231297 (-)
sox19b LOC104926817,LOC103365479,LOC100693580,LOC102199731,LOC101477749,LOC104962535 other upstream 624237 6308898 ~ 6315817 (-)
LOC120572256 NA other upstream 668803 6353464 ~ 6371100 (-)

Expression


Co-expression Network