otub1b (otub1,LOC102780151)


Basic Information

Item Value
gene id otub1b
gene name otub1,LOC102780151
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 7750308 ~ 7756854 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823539.1
agaaatttaaAGACTCGCCGGAAGTGTGTAATGAATGAGGTCATGCAGAAGGAGGAAACAGACCTCGATAGCTAGCTAAGATGGCGGAGGAGCAGCAGGAATCATCACAGGCAGAGGGGGAGGGAGTGAACTGCCTTGCATATGATGAGGCCATAATCGCTCAACAGGACAGAATTCAGCAGGAGATAGCCAATAGTAACCCTTTagtgtcagacagacaggaccTGGCGGTGCTGCAGAGGGAGTACGCTGAGGATGACACAGTTTATCAGCTCAAGATCAAGGACCTACACAAAAAATACTCGTACATCCGTAAGACGCGACCAGATGGGAACTGTTTCTACAGAGCCTTCGGCTTCGCACATCTCGAGTCGCTGCTAGATGACAGCAAAGAACTGCAGAAGTTCAAAGCAGTGGCCACTAAAAGTAAACTGGAACTGGTTAACGAGGGCTTCACTGAGTTTACCATTGAAGACTTTCACAATACTTTCATGGACCTGATCGAGCTGTGTGAGAAGCAGCCGCGCCTGCAGGAGCTCCTGAACTCCTTCAATGATCAGAACGTGTCGGACTACGTGGTGGTGTACCTGCGGCTGCTCACCTCGGGCTACCTGCAGCGAGAGTATGGCTTCTTTCAGCACTTCATAGAGGGAGGACGCTCCGTCAAGGAGTTCTGTCAGCAGgagGTAGAGCCCATGTCTAAAGAAAGTGACCACATCCACATCATCGCATTGGCCCAGGCCCTGAACGTGTCCATCCTGGTGGAGTACATGGatagaggagagggaggaacagtCAATCACCACGTCTTCCCTGAAGGCGGCGACCCACGCATCTTCCTCCTCTATAGACCTGGCCATTACGACATCTTGTACAAATAACACTCCTGGCCACAGCCCGCCTCATTCTCCTCCCGCTGTACGCTACAGCACTggggttaaaaaataaataaaaaataacttcaGCAGCAACGTTGATGAAGCATACATCTGTGTACGAGATCACACttatgtatttgaaaaaaagttaaaaataaaagataaaatcaCATGACATGCCTCCCTTACCCCTCTCGTCCCAAACTCCCAAGTTTATCCTCAGTCATCACAAAatggttaataaaaaaaaatctttggaaGAAATAGAAGTGACTCCAGGCATTTAGAGTtgtacaggtttttttttctttttttttttttttgtggttgtaAATGTTATCTACTTGCTTTATGTTGGATTCTTTTCCTTTGTTACACTGCGTTTCATTGAGTTTTATTAAAGGGATTTACATCTTA

Function

symbol description
otub1 Enables ubiquitin binding activity; ubiquitin protein ligase binding activity; and ubiquitin-like protein-specific protease activity. Involved in cellular response to DNA damage stimulus; negative regulation of nitrogen compound metabolic process; and protein K48-linked deubiquitination. Located in extracellular exosome. Biomarker of IgA glomerulonephritis and lupus nephritis.

NR:

description
ubiquitin thioesterase OTUB1

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K09602 OTUB1; ubiquitin thioesterase protein OTUB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823539.1 True 1295 mRNA 0.46 7 7750308 7756854

Neighbor

gene id symbol gene type direction distance location
cskmt mettl12 coding downstream 462 7747779 ~ 7749846 (-)
LOC120573565 NA coding downstream 6272 7741232 ~ 7744036 (-)
nrxn2b nrxn2b,nrxn2,LOC106577539,LOC108427447,LOC102303057,LOC101464276,LOC102778344 coding downstream 355230 6725271 ~ 7395078 (-)
LOC120573537 NA coding downstream 1092858 6655956 ~ 6657450 (-)
c14h11orf68 clg18h11orf68,LOC104919665,LOC103366235,LOC104965781,LOC106907460,LOC102230372 coding downstream 1181112 6566570 ~ 6569196 (-)
nectin4a NA coding upstream 905 7757759 ~ 7780739 (-)
ndufs2 ndufs2 coding upstream 31047 7787901 ~ 7795793 (-)
kirrel1a kirrel,LOC102307446,LOC102202990,LOC101467841,LOC102781300 coding upstream 40425 7797279 ~ 7835028 (-)
trnar-ucu_15 NA coding upstream 80367 7837221 ~ 7837294 (-)
LOC120573599 NA coding upstream 104866 7861720 ~ 7871073 (-)
G141781 NA non-coding downstream 191134 7558812 ~ 7559174 (-)
G141778 NA non-coding downstream 228515 7521213 ~ 7521793 (-)
G141774 NA non-coding downstream 231551 7518509 ~ 7518757 (-)
G141773 NA non-coding downstream 231841 7518265 ~ 7518467 (-)
G141741 NA non-coding downstream 287835 7395159 ~ 7462473 (-)
G141912 NA non-coding upstream 87251 7844105 ~ 7846084 (-)
G141920 LOC102310269,LOC102201257,LOC102782862 non-coding upstream 221020 7977874 ~ 7978789 (-)
G141932 LOC104946620,LOC103361161 non-coding upstream 248974 8005828 ~ 8009859 (-)
G141974 NA non-coding upstream 324010 8080864 ~ 8081655 (-)
LOC120572408 NA non-coding upstream 464985 8221839 ~ 8222181 (-)
LOC120572295 rasgrp2,LOC104942268 other downstream 46690 7648972 ~ 7703618 (-)
tbc1d14 tbc1d14 other downstream 1333851 6375972 ~ 6416457 (-)
LOC120572256 NA other downstream 1379208 6353464 ~ 6371100 (-)
sox19b LOC104926817,LOC103365479,LOC100693580,LOC102199731,LOC101477749,LOC104962535 other downstream 1434491 6308898 ~ 6315817 (-)
LOC120572220 NA other downstream 1519011 6221971 ~ 6231297 (-)
fcer1g NA other upstream 25057 7781911 ~ 7787667 (-)
LOC120573451 NA other upstream 84067 7840921 ~ 7937490 (-)
G141913 NA other upstream 178376 7935230 ~ 7987441 (-)
LOC120572400 NA other upstream 350793 8107647 ~ 8112684 (-)
LOC120573543 NA other upstream 575511 8332365 ~ 8335374 (-)

Expression


Co-expression Network