LOC120573709 (H2AFZ,LOC100694115,LOC102297571,LOC102200939,LOC101065890)


Basic Information

Item Value
gene id LOC120573709
gene name H2AFZ,LOC100694115,LOC102297571,LOC102200939,LOC101065890
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 3455520 ~ 3457848 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823625.1
CCCGGATAAAGATTGGCTATATTATAGGGACAATTGAAGGCGGGGGTTGTAGTCCAAACTAGCAGTCGGTACTTGGTAGCAAGCTACTCGATTTTGTGCTGCAGCTTCAGAAATTATTTGTGGCTTTTAAATATGGCTGGTGGTAAGGCAGGTAAAGACTCCGGGAAGACCAAGACGAAGGCTATCTCGCGCTCTCAGAGAGCAGGACTGCAGTTCCCAGTGGGTCGTATCCACAGACACCTCAAGTCCCGAACCACCAGCCACGGCAGAGTGGGAGCCACTGCAGCGGTGTATAGCGCGGCTATTCTGGAATACCTCACTGCCGAGGTTCTGGAGTTGGCAGGAAATGCCTCCAAGGATCTTAAGGTGAAGCGTATAACCCCCCGCCACTTGCAGCTTGCCATCAGAGGAGATGAAGAGCTGGACTCTCTTATCAAGGCCACTATCGctggtggAGGTGTGATCCCTCACATCCACAAGTCCCTGATTGGAAAGAAGGGCCAGCAGAAGACTGTATAAATTGCTCTGGAAGTTGTGCCATCTCAGGACGACATCTGCATTAAGTGGTTAAATGTCTTAGATTTAGGAGTTATTTGTATTGGTGAGCTTGCATTTACTCACCtggggtatttttttttttttttaaagtggcttcAGAGAAGCTCATTTTTGTGTTTctgcttccttttttttctggtgctgctttttttatttttttttattttatttttttccaacttgCTTTTGTGGCAATTCAATGTTCAAAGTGGTGTTTTAATAAAGCTCTAATTGGGGCATTTGCAGTTTGTTCTTTCAGTTCTTGCATTTCCATGAGCTCAATTATGTCTTCACTGTAGGTATTCAGTTGGCTTCTCCAATGTGGATGTGTTTGGCTTTAGTGGTCTTAATCTTCCCAGGTTGAAAGAATCCACCTTGATCATCAAAACGAAAGCTACCACATCCTGCAAGTGGAAGAGTCATGGCATGCTTGGAACCATCTTAAGCATGCAAACATGTAGTTCCAGCCTTGTGTAGTTGCAGAAATTGCAAAGCATGTTTTACATCAGTTTACCCCTGGACTGACATGAAATGGGGAAAACCCTGTAGTCATTTCTGGATTGCTGAATAAAGACTAGACTGGCACAGTT

Function

NR:

description
PREDICTED: histone H2A.Z isoform X1

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007275 multicellular organism development biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823625.1 True 1148 mRNA 0.44 5 3455520 3457848

Neighbor

gene id symbol gene type direction distance location
focad focad coding downstream 202545 3166868 ~ 3252975 (-)
c14h4orf54 NA coding downstream 326904 3117234 ~ 3128616 (-)
si:dkey-219e21.4 NA coding downstream 636861 2812555 ~ 2818659 (-)
pde5ab pde5a coding downstream 657989 2678945 ~ 2797531 (-)
LOC120572242 NA coding downstream 1433153 2019612 ~ 2022367 (-)
adam19a LOC108242304,LOC103148901 coding upstream 346138 3803986 ~ 4118384 (-)
ing2 ing2 coding upstream 798787 4256635 ~ 4259813 (-)
slx1b LOC103361641 coding upstream 844797 4302645 ~ 4312866 (-)
pygmb pygm,LOC106531364,LOC100706889,LOC107384765 coding upstream 874415 4332263 ~ 4351683 (-)
sf1 sf1,LOC104940820 coding upstream 895753 4353601 ~ 4368352 (-)
G140882 NA non-coding downstream 154 3455015 ~ 3455366 (-)
G140878 NA non-coding downstream 17023 3438119 ~ 3438497 (-)
G140877 NA non-coding downstream 17914 3437385 ~ 3437606 (-)
G140875 NA non-coding downstream 19328 3435918 ~ 3436192 (-)
G140874 NA non-coding downstream 20160 3435060 ~ 3435360 (-)
G140892 NA non-coding upstream 22167 3480015 ~ 3480343 (-)
G140910 NA non-coding upstream 65281 3523129 ~ 3579352 (-)
G140917 NA non-coding upstream 124864 3582712 ~ 3586257 (-)
G140926 NA non-coding upstream 216243 3674091 ~ 3674463 (-)
G140997 NA non-coding upstream 606348 4064196 ~ 4064740 (-)
LOC120573530 NA other downstream 312331 3139121 ~ 3143189 (-)
arsj arsj other downstream 833420 2597834 ~ 2622100 (-)
camk2d1 LOC100695450,LOC101472930 other downstream 882037 2454066 ~ 2573483 (-)
G140615 NA other downstream 1397329 2051481 ~ 2058191 (-)
LOC120573528 NA other downstream 1423014 1927132 ~ 2032506 (-)
G141003 NA other upstream 697076 4154924 ~ 4155547 (-)
G141027 NA other upstream 816803 4274651 ~ 4275274 (-)
LOC120573533 NA other upstream 863916 4321764 ~ 4332019 (-)
G141145 NA other upstream 1183647 4641495 ~ 4664198 (-)
G141159 taf6l other upstream 1202773 4660621 ~ 4661111 (-)

Expression


Co-expression Network