LOC120574664


Basic Information

Item Value
gene id LOC120574664
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9947571 ~ 9953355 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU207800
ATTCTTGTCCTCAGCTTCATCATGCAATATTgtgcaatatatttaaaatgaacCTTTAGACCTATTGATCATCTGTGTTCTTTAATTGACCTTTATTGGTATTTACATGTTTTGACACAACTGTTTCACAGATACTACAACATCACCACCGACTCTGTTCCCTTTGGTTCAGTGCAATCCTGGGGCTGCGAATCTAGTCACTGTTGGCTGTCTTGCACAAGACTTCTACCCAAATAGTCTTACTTTCCAGTGGACCGATGCCAGTGGGACCACCCTGACTGCAGCTGAACAATTTCCTCCAactgagaaaaacaacaaatatacaaGAGTCAGTTCGCTCAAGGTACCAAAATCTGAATGGGATTCAAGGAGACCTTATAGTTGTTCTGTGACTCACCCTGGAGGCCCCAAAACCGTGGAACTATTAAAAgCTCCTTCAGCTCCTCCTTCCCCAACCATAAAGCCCCCAGTGCCTCCAAATGGACCTGCAGTCAAAGTGGAACTGAAGCAAGTCTCAAGTGTCAAAGAAATCTTTAGCAACAACCAGGCAAAGTTGAAGTGTATCGTTACTGGACAGGACCAGAATGTTGtaaatcaaattaaaatcaCTTGGCAAATCAATGGAAACCCTGTGATCAACAACATCACACCAACACAGTCAGGAGTCAGCACAATGACTCTTACCCGCACTGAGTGGATGAGAAACAACAACGTGGGCTGTTCTGCCACGAAAGACGATATGACACTAGCTAGTCAAGATCTGACTATCCGCAAAGGAGGTAAGTTACTGAGTGTCTTTGACGGAGACAGATTGGTCGAACAGTGACCTGTAAGTCTGGGGAGGCAGccaatttacacacacacaaacatgtcatAATCGATGTATAGCAAATGTAAAAGCCTAAATATGAACATCCTTGTTAAACCGAGTATCTCTTTCAGATGGGAGCGAGCCAAAAGTAACAGTCCACATCCTCCCAGATGAGGACATCATCGATGATGTCACTCTGGTGTGCCTGGTTTCCAATCCGGTGCAGCAGGATTACTACATCGCCTGGTCAGAACATATTGGACAAAACACCCCCATCTATACTGATGGCATTAACTTACCCCCAGTGAATACCCAACAAAGATACTCAGTTGCAAGTATTTACACCACCACCaaagaaaagtggaaaaagtccACCATGTTCTCCTGCCACGTATGGCCTGGTACTGGCGAAAAGCCTACTATATCCAGAAATGTGTCTAATGCCATGAGTAACTCCATTGAATGTAAGAAATAGTAGATTCAGCTTTAAATGTGGCAGTTTGTGCTAATGTGttgttctgtctctgtgtgtactctCTGCCATGAGAACCTGTCTTTGTGATTGTAAAACGGTCAATTTACTATTGTTTGTCATATTGTGTTTCAATCTGTCTACGTCACATTGTCTAACAGCTTGAGAAGTGTGCTGactgtttcaaataaatgttGCATGGAGACACTTTTGTTACACGTTTATGAATGACTTCAATATTTTAAACAATCTATGTACAATTAGTCTTCAATGATATCTTACAATAGTACTGTATAATACTACACTGCTCCACTGGATTAGGATCCACACTTTACATGTCATCAAAGTGAATAATGCTTGATTTCAGTTCCTGAGCACAATTCAAGAGAGAAAAATGTCTTATGTGCTATATTATTaaaaacctctctctctctctcacacacacacacacacacacctaactgCCTATGCCTTCCTCTTCTTAGATTTCACTCCAGAATCAAATCTGAGTTTTGCTCTGAGCTGCACAGATGATGCCTTTGAGGAGGAAGAGTACAGCAGCCTTTGGTCCACAGCCTTCTCCTTCATAATCCTCTTCATATCCTCTCTTCTCTATAGCATGATATTCAGCCTGGTCAAGGTAAACATGCAGGCTTCCTCTTAGTTGTACTAAAGACTGAATGTAATACAGGATTTATACATTACAGTTTGACCAAGTACTTTACAAGTTAAAGCCCAGTCATGTAAATAAAAATCAAGCACTTAAAGGAAAGGATATTTTTGACCTACTCATCTTTGAACAGTTTTTCTGTGGTTGCGGTAGCTAATTTCCATCAACACAAACAATAATGTGCAAGAGAAGAAAAGACTCTAAATTGCCCGGATATTATCAGTATAATATGGGATTCCCCTGTAATAAAAACGATTGCATCcattttgcaaaataaaataagacataagtaataaaaataaaaaaattctgaaaagtTAATTGACACCAAATGATTATCTTTGGCTGGTGAATTGCTctgactataacaataactGTAATATTAAAGGTTTATTGTGTTGATTTTAATGGACACAATTACGCTGTAAAAACTGCATCCCTTTTAGAGTTTATTGGAGAGAATAGGCATGGCCAATGAGCTCAGGTGTGACTGATCACAATGAGCATCAGCTGaatgaacacagaaaatgtgctggtttctgtgtttttaaatgctCCAATAACCATACTAGTATATTAGCgatttattaaattaaacagAAATGCC
>XR_005641879.1
gctgtttattattgtgctcgagaGTAACAGTGATACAGGAAGCCACAGAGCTGTACACAAACCACTGCAGATGTCACTGTGACAGTCATTGATAGAAAGTGTTTTTGTTCCAGCAGTGAGTGGAGATGTAGCACTGTGATTACTTTGACTACTGGGGCAGCGGGACTGAAGTCACAGTAACAGATACTACAACATCACCACCGACTCTGTTCCCTTTGGTTCAGTGCAATCCTGGGGCTGCGAATCTAGTCACTGTTGGCTGTCTTGCACAAGACTTCTACCCAAATAGTCTTACTTTCCAGTGGACCGATGCCAGT
>XR_005641880.1
CCCATTCTTGTGATGAAAAAAAAGCTGAGGACTGAATATTTCCTACTGAAATATGAGGTTTTTGTTCCAGCAGTGAGTGGAGATGTAGCACTGTGATTACTTTGACTACTGGGGCAGCGGGACTGAAGTCACAGTAACAGATACTACAACATCACCACCGACTCTGTTCCCTTTGGTTCAGTGCAATCCTGGGGCTGCGAATCTAGTCACTGTTGGCTGTCTTGCACAAGACTTCTACCCAAATAGTCTTACTTTCCAGTGGACCGATGCCAGT

Function

GO: NA

KEGG:

id description
ko04380 Osteoclast differentiation
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
TU207800 True 2560 lncRNA 0.39 2 9950608 9953355
XR_005641879.1 False 317 lncRNA 0.47 3 9947571 9950872
XR_005641880.1 False 274 lncRNA 0.46 3 9948607 9950872

Neighbor

gene id symbol gene type direction distance location
LOC120574415 NA coding upstream 7938 9938963 ~ 9939633 (+)
LOC120574613 NA coding upstream 51722 9895289 ~ 9895849 (+)
LOC120574608 NA coding upstream 53987 9893146 ~ 9893584 (+)
LOC120574409 NA coding upstream 59604 9879302 ~ 9887967 (+)
LOC120574335 NA coding upstream 825442 9121513 ~ 9122129 (+)
LOC120574578 nacc1,LOC103392937,LOC103373299,LOC104936741 coding downstream 81207 10034562 ~ 10049463 (+)
ier2a NA coding downstream 102053 10055408 ~ 10056536 (+)
alkbh7 alkbh7,LOC102776873 coding downstream 203085 10156440 ~ 10159160 (+)
LOC120575195 fcl,LOC104949045,LOC101063721 coding downstream 206086 10159441 ~ 10163606 (+)
LOC120575114 LOC102196266 coding downstream 229880 10183235 ~ 10191164 (+)
G153423 NA non-coding upstream 12533 9921552 ~ 9935038 (+)
G153424 NA non-coding upstream 21086 9926138 ~ 9926485 (+)
G153415 NA non-coding upstream 68708 9872321 ~ 9878863 (+)
LOC120574665 NA non-coding upstream 82681 9862985 ~ 9864890 (+)
G153340 LOC108239224 non-coding upstream 232509 9658348 ~ 9715062 (+)
LOC120574581 NA non-coding downstream 19849 9973204 ~ 9974573 (+)
G153640 NA non-coding downstream 216587 10169942 ~ 10235939 (+)
G153684 NA non-coding downstream 445770 10399125 ~ 10399353 (+)
G153740 NA non-coding downstream 649062 10602417 ~ 10602964 (+)
G153746 NA non-coding downstream 656236 10609591 ~ 10638479 (+)
LOC120574658 NA other upstream 8967 9938019 ~ 9938604 (+)
LOC120574414 NA other upstream 11290 9935671 ~ 9936281 (+)
LOC120574413 NA other upstream 13376 9931152 ~ 9934195 (+)
LOC120574623 NA other upstream 26759 9920331 ~ 9920812 (+)
LOC120574412 NA other upstream 27420 9908580 ~ 9920151 (+)
G153433 NA other downstream 112105 10065460 ~ 10066742 (+)
G153646 NA other downstream 297022 10250377 ~ 10341623 (+)
G153808 spag9 other downstream 798805 10752160 ~ 10752898 (+)
LOC120574482 znf207,LOC108444040,LOC108278632 other downstream 1110504 11063859 ~ 11073826 (+)
LOC120574068 NA other downstream 1253686 11207041 ~ 11225249 (+)

Expression


Co-expression Network