G154038 (sumo2)


Basic Information

Item Value
gene id G154038
gene name sumo2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11310425 ~ 11318493 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU208736
tgtTTATTTAACTGACAGATCTCTTCAGGCTTCCCAAAATGTGAAGCATGGCCTAGTCAAATGATTGATCAAACATTTCTCTATACATTCACTACTAtataaaaatttataaaatcaaatatttttttctgaagaTAACAGAAACCAAAGCCCTAATCCCAAACTGTGTATACTGTTCCCTAAGTGATTGCCAGTCCCAAAATAGTACAGTTTAAGAACAGATTTTCTGGACACTAACCAAGCCCAGACCAACAACATTTGACCAGAAAAAAGTCAGGTTTATTAATTCTTACTCTATCAACAGTCCTATATGTCTGCAACCTTGCAGAATAAGTCCTTAACATTTACCACAATACAGCATGAACAAACAAAACCTTTGTGTGGTTTAtatacaaaaacagaaaagtaaCAAGGGCAATAATTCAAATACTATACAGCAGTTGTGTGAAGCAGATAAACTTCTTCTGCATGGAATTTTGTTGAGACAATAGGAAAAGTTGCAAAGAAGCAGCCGCTGTGAATCACAGGCCCGGATGGTTGGTTATGTTAGGGAGGAAAATGGTGAAGCATGTTGATTATATGAGGCCTCCTGTCTGTTGTTGAAACACATCAATTGTATCTTCATCTTCCATTTCCAACTGTGATGGTGTGTCCGTCTCATTTATTGGCTGTCCATCAAATCTGAACCTGATTTGCCGCATTGCCAGTCCCTGTCTATCGCAGTAGGCCTTCATGAGTTTGATGAGCGGCGTGTGTCTTTTGATCTTGAACTGCACTATAGATCCATCCTGACCTGCTACCTTCAGGTTTATGTGTTCATTGCTTTCTGTCTTGACTGCTTCCTTTGGTTTTTCATCAGCCATGGTCACTCTTTTGGCGCTTCTCTATGCTGCC

Function

symbol description
sumo2 Enables ubiquitin protein ligase binding activity. Involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein sumoylation. Located in PML body.

NR:

description
PREDICTED: small ubiquitin-related modifier 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208736 True 894 lncRNA 0.39 4 11310425 11318493

Neighbor

gene id symbol gene type direction distance location
LOC120574067 NA coding upstream 100587 11202778 ~ 11209838 (+)
LOC120574489 NA coding upstream 218279 11088206 ~ 11092146 (+)
LOC120574484 NA coding upstream 252202 11055103 ~ 11058223 (+)
rhot1a rhot1,LOC102207791,LOC103392922,LOC100690483,LOC102790665,LOC101469002,LOC105933022 coding upstream 255359 11037680 ~ 11055066 (+)
adap2 LOC104934589,LOC103360692 coding upstream 273793 11030860 ~ 11036632 (+)
nup85 nup85 coding downstream 756 11319249 ~ 11328213 (+)
mrps7 mrps7,LOC102783021 coding downstream 19558 11338051 ~ 11341483 (+)
slc25a19 slc25a19 coding downstream 29723 11348216 ~ 11351460 (+)
zgc:161969 LOC103361864,LOC104946073,LOC101481854,LOC100704716 coding downstream 144265 11462758 ~ 11465509 (+)
lmtk2 lmtk2 coding downstream 183790 11502283 ~ 11532752 (+)
G153917 NA non-coding upstream 227718 11081649 ~ 11082707 (+)
G153916 NA non-coding upstream 229767 11079752 ~ 11080658 (+)
G153915 NA non-coding upstream 230745 11078455 ~ 11079680 (+)
G153872 NA non-coding upstream 301375 10973335 ~ 11009050 (+)
G153892 NA non-coding upstream 340581 10967630 ~ 10969844 (+)
G154051 NA non-coding downstream 33717 11352210 ~ 11352460 (+)
G154109 NA non-coding downstream 171413 11489906 ~ 11493649 (+)
G154124 LOC108239293,LOC104946078,LOC104918844,LOC101480216,LOC102194634,LOC100693182 non-coding downstream 180356 11498849 ~ 11501165 (+)
G154149 NA non-coding downstream 325663 11644156 ~ 11649921 (+)
LOC120574841 NA non-coding downstream 373415 11691908 ~ 11695459 (+)
LOC120574068 NA other upstream 85176 11207041 ~ 11225249 (+)
LOC120574482 znf207,LOC108444040,LOC108278632 other upstream 236599 11063859 ~ 11073826 (+)
G153808 spag9 other upstream 557527 10752160 ~ 10752898 (+)
G153646 NA other upstream 968802 10250377 ~ 10341623 (+)
G153433 NA other upstream 1243683 10065460 ~ 10066742 (+)
G154254 NA other downstream 767368 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other downstream 770880 12089373 ~ 12093558 (+)
G154461 NA other downstream 1524930 12843423 ~ 12846597 (+)
LOC120574968 LOC102294452 other downstream 1698466 13016959 ~ 13026416 (+)
vasnb vasn other downstream 2337522 13656015 ~ 13692303 (+)

Expression


Co-expression Network