G154494 (LOC100710707)


Basic Information

Item Value
gene id G154494
gene name LOC100710707
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12980253 ~ 12981635 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU209328
TGTCTCCTGCAGTGTGTCCAGCTGCTCACACTTGCCCTTGCATCCCACAACACCCTGCAGGTCCTGTCGGATTTTGCCCAGCTCCACCTCAAGTCTCTGCACCTCCACTAGCAGAGCATCATGGTCCTCCTGCTTCACACCCACACTGACGGGAACTGTGTCTGCTGACGAAGTGACaacctccttctctctttcctgctTCTCGAGTTcatactgctgctgcttcagTTGCACCGACTCAGTCTTGGAAGCCAGAGTGTTGAGCAGCAATTCTAAATCAGCCAGCCTTGTTGCCTGACCCTCTTGGTGCCGTTTCTGCTGCTCTGCACTCTGTGCTCTCTGTGTGCTCTCCTGCGTCAGCTCTCCCCGTAACACGCCAAGTCTCTGCTCCAGCAGGGAGGACACCCACAGTCCCAGGCTCTCCCTGTCCGTCTGAGTGTGGAGCTGCTCCCTCAGGGTGCTGTACAGACCCAAAACTTCCCCGTGACGCTGCTCCTGCTCCTGGTCACCCTGCTGGACTCGTTCCCAAAGCAGAGTTAGTCGTTGTTCAATGCGCTCCAGTCGCGCCAAGTCCACACTAGAGACCGCCACAGGGGGGAGGGACGGCTGAGGAAGAGAAGGTTTGGAATAGATACAGAAAGAAAGTTGCAAATTGAGGTGACTTCAAG

Function

NR:

description
PREDICTED: SUN domain-containing protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209328 True 668 lncRNA 0.56 4 12980253 12981635

Neighbor

gene id symbol gene type direction distance location
gprc5ba gprc5b,LOC103360712 coding upstream 28015 12938684 ~ 12952238 (+)
proza NA coding upstream 48933 12923370 ~ 12931320 (+)
LOC120574877 LOC103393031,LOC103469206,LOC105930142,LOC107092540,LOC104925717,LOC108239269,LOC106518725 coding upstream 107338 12864935 ~ 12872915 (+)
mfsd13al LOC104947686,LOC100692111,LOC102297699,LOC101482249 coding upstream 121095 12854029 ~ 12859158 (+)
sdr42e2 LOC103360721,LOC100712049 coding upstream 138908 12817115 ~ 12841345 (+)
LOC120575071 dnaaf5,LOC102780779 coding downstream 441910 13423545 ~ 13448411 (+)
LOC120574400 gde1 coding downstream 466992 13448627 ~ 13454217 (+)
LOC120574401 NA coding downstream 472857 13454492 ~ 13460827 (+)
glis2b glis2,LOC102778126 coding downstream 621193 13602828 ~ 13631755 (+)
dnaja3a dnaja3,LOC102777832 coding downstream 767285 13748920 ~ 13754367 (+)
LOC120574706 NA non-coding upstream 75435 12889419 ~ 12904818 (+)
G154447 NA non-coding upstream 152676 12782774 ~ 12827577 (+)
G154410 NA non-coding upstream 245341 12734683 ~ 12734912 (+)
G154385 NA non-coding upstream 411401 12566974 ~ 12568852 (+)
G154379 NA non-coding upstream 456581 12475767 ~ 12523672 (+)
LOC120574709 NA non-coding downstream 10268 12991903 ~ 12995560 (+)
G154535 NA non-coding downstream 46497 13028132 ~ 13034382 (+)
G154555 NA non-coding downstream 135759 13117394 ~ 13117721 (+)
G154586 NA non-coding downstream 252478 13234113 ~ 13234321 (+)
G154602 NA non-coding downstream 287284 13268919 ~ 13269290 (+)
G154461 NA other upstream 133656 12843423 ~ 12846597 (+)
G154254 NA other upstream 865061 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other upstream 886695 12089373 ~ 12093558 (+)
LOC120574068 NA other upstream 1755004 11207041 ~ 11225249 (+)
LOC120574482 znf207,LOC108444040,LOC108278632 other upstream 1906427 11063859 ~ 11073826 (+)
LOC120574968 LOC102294452 other downstream 35324 13016959 ~ 13026416 (+)
vasnb vasn other downstream 674380 13656015 ~ 13692303 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other downstream 787384 13769019 ~ 13781685 (+)
trnat-agu_6 NA other downstream 788068 13769703 ~ 13769776 (+)
G154743 LOC102293104 other downstream 865504 13847139 ~ 13854286 (+)

Expression


Co-expression Network