G154872 (LOC104945235)


Basic Information

Item Value
gene id G154872
gene name LOC104945235
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14437476 ~ 14439147 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU209872
TAGAGTGCAGAGTCATTGAGCTCAAACTCGTAACCTCTGGCTGCAGCTGCTTGCACCCCTTGGTCGGCCCAAAGTGCACAGATTGCATGAGCCACGAAAGGAAGCAGCTCCTGGTCTTCCCCCAAACACTGACTGCAGGACAGGATGGAGTGGGCATGCATCTTGTTAGCAAGATTAATCCTCAGCATCCCCATTCCTTGAAGAACAAACTTCATGGAGGTCAGCAGGTTGTCTAGTACTGCATGCTACAGAGGAAATGACGGTCAACCTTTTGTCCTATGACTGATGTGCTGAAAGTTGTTGGACTCCGATAGTTCAGGGTGTTTAACAAATGCTTAATTCGCTTGCAGCTGTCCAATACCTTAAAACTTATGAGCTCCTGTTTGGAGAAGCCGTGACTGTGGATTATCTTAATCTGTTTGATTAGGGTGCTCTTTCCACTCTCTGCAGttcctgacacacacaaaccaaacacaTGCTTCCACTTAAAAATGGCAACACTTCACTGAAACCCGTTAAACTACGTTCATGTAATAAATGCCTTTAAACTTACCAAGCATGAGGATTTTTACCACATTGATCTCAGTCTGGGCATGTTCACAAAGGTCTTGCTCTATTTTAGAGCTCTGGAGTTTAGCCTTTTTACCCTCATCTGTGATATCCTGGTGAGGGCACATTCCCATGCAGCTGCAGTGGGGCTGGCAGTAGGCCTATACCAAGACAGCAAAACATCTCTCTGCTTTCGCTCTACACACCGGCGTCGCTCGACTCACAGCTTGAACGGCTAACAGAGTTAGCAACAAACGGAAGACTTAATTAGCTTAATTGGGCGCACGTGTGAACCCGGATTTGCTTTCTTGACAGCTTCTTTCAG
>TU209873
TAGAGTGCAGAGTCATTGAGCTCAAACTCGTAACCTCTGGCTGCAGCTGCTTGCACCCCTTGGTCGGCCCAAAGTGCACAGATTGCATGAGCCACGAAAGGAAGCAGCTCCTGGTCTTCCCCCAAACACTGACTGCAGGACAGGATGGAGTGGGCATGCATCTTGTTAGCAAGATTAATCCTCAGCATCCCCATTCCTTGAAGAACAAACTTCATGGAGGTCAGCAGGTTGTCTAGTACTGCATGCTACAGAGGAAATGACGGTCAACCTTTTGTCCTATGACTGATGTGCTGAAAGTTGTTGGACTCCGATAGTTCAGGGTGTTTAACAAATGCTTAATTCGCTTGCAGCTGTCCAATACCTTAAAACTTATGAGCTCCTGTTTGGAGAAGCCGTGACTGTGGATTATCTTAATCTGTTTGATTAGGGTGCTCTTTCCACTCTCTGCAGttcctgacacacacaaaccaaacacaTGCTTCCACTTAAAAATGGCAACACTTCACTGAAACCCGTTAAACTACGTTCATGTAATAAATGCCTTTAAACTTACCAAGCATGAGGATTTTTACCACATTGATCTCAGTCTGGGCATGTTCACAAAGGTCTTGCTCTATTTTAGAGCTCTGGAGTTTAGCCTTTTTACCCTCATCTGTGATATCCTGGTGAGGGCACATTCCCATGCAGATCTGAGCAAGAATTTAGCTTTCACATGGATGCTTTGGGACTAAAACACGACTTCAAAAACTATAgtaataacatttcataaacaatTGAGGATGTGTTTtagtaaatgttta

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein G(o) subunit alpha-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209872 True 874 lncRNA 0.46 3 14437476 14439147
TU209873 False 800 lncRNA 0.43 2 14437476 14438593

Neighbor

gene id symbol gene type direction distance location
LOC120575371 LOC104945238 coding upstream 7819 14428117 ~ 14429657 (+)
LOC120574464 LOC104918338,LOC103373486,LOC103393004,LOC106518679,LOC108241369,LOC103140983 coding upstream 340600 14066786 ~ 14096876 (+)
LOC120574871 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding upstream 381633 14054552 ~ 14055843 (+)
LOC120574849 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding upstream 388039 14048086 ~ 14049437 (+)
LOC120575215 sox8 coding upstream 436800 13996902 ~ 14000676 (+)
syngr2a LOC103373322 coding downstream 106507 14545654 ~ 14549374 (+)
cant1a NA coding downstream 114022 14553169 ~ 14558801 (+)
LOC120574730 NA coding downstream 119682 14558829 ~ 14562753 (+)
timp2b LOC103373294,LOC104925068 coding downstream 134253 14573400 ~ 14581660 (+)
usp36 usp36 coding downstream 143456 14582603 ~ 14601556 (+)
G154824 NA non-coding upstream 110987 14326282 ~ 14326489 (+)
G154811 NA non-coding upstream 149492 14285174 ~ 14287984 (+)
LOC120575155 NA non-coding upstream 196371 14107781 ~ 14241105 (+)
G154777 NA non-coding upstream 380510 14049831 ~ 14056966 (+)
LOC120575454 NA non-coding upstream 482753 13946606 ~ 13954723 (+)
G154875 NA non-coding downstream 3945 14443092 ~ 14444138 (+)
G154880 mafg,LOC104918330,LOC108241257,LOC103373400,LOC101487863,LOC106533856 non-coding downstream 15692 14454839 ~ 14459153 (+)
G154881 NA non-coding downstream 24115 14463262 ~ 14463463 (+)
G154883 NA non-coding downstream 31365 14470512 ~ 14470987 (+)
LOC120575161 NA non-coding downstream 291471 14730618 ~ 14738716 (+)
G154743 LOC102293104 other upstream 583190 13847139 ~ 13854286 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other upstream 655791 13769019 ~ 13781685 (+)
trnat-agu_6 NA other upstream 667700 13769703 ~ 13769776 (+)
vasnb vasn other upstream 745173 13656015 ~ 13692303 (+)
LOC120574968 LOC102294452 other upstream 1411060 13016959 ~ 13026416 (+)
si:dkey-282h22.5 NA other downstream 542089 14981236 ~ 14984745 (+)
LOC120574428 NA other downstream 546553 14985700 ~ 14986913 (+)
LOC120575440 LOC102304323 other downstream 552866 14992013 ~ 14992508 (+)
G155088 NA other downstream 696644 15135791 ~ 15139706 (+)
ndel1b ndel1,LOC104940291 other downstream 927773 15366920 ~ 15404605 (+)

Expression


Co-expression Network