cacng5b (LOC104918808,LOC100698262,LOC103361465,LOC103141620)


Basic Information

Item Value
gene id cacng5b
gene name LOC104918808,LOC100698262,LOC103361465,LOC103141620
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12685588 ~ 12693357 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823832.1
ACCAGGCGTTTGTCTGACTCAGTGTGTTGCACTGACGCACTGCTGCATCGTCTCGGTCCTTAAAGCTTCCCGCGGCTTCACATTACGGTTTTCTGAAGGAATTTTGCAGGTTTTAATCCACAACTTGAGCACAACATTTGTTCAAAGTGCAGGAAACAGCGCTGAGACTGTACAGATTACAAACAGaTTGCTTCTTGGACTTTTCTTCATTTTAACCGACCCCTGCTGGAAGATTCCCCCGCTGTCACCATGAGCGCTTGCAGCAGGAAGGCCTTGACATTGCTGAGCAGTGTCTTTGCAATCAGTAGCCTGGGGCTGCTGGGAGTGGCAGTCAGCACAGACTACTGGTTGTACCTGGAGGAGGGCGTCATTATGCCTCTGAACCAGAGCATCGACATCAAGACGTCGCTGCACTCCGGCCTGTGGAGAGTCTGCTTCCTGGCTGGTGGCGAGTCTGGTCGCTGCTTCACCATCGCCTACATCATGCCCATGGATGTCCAGTTGACGTCCGAGTCCACAGTAAACGTGCTCAAGATGATCCGCTCAGCCACTCCGTTCCCTCTGGTCAGCCTTTTCTTCATGTTCATCGGCTTCGTCCTCAACAACGTTGGCCACGTCCGGCCTCACCGCACCATCCTGGCATTTGTCTCCGGGatcttcttcatcctctcaggtcTGGCTCTGGTGGTGGGCCTGGTGCTGTACATCTCCAGTATAAATGATGAAATGCTGAATAGGACTAAGAGCAGTGAAACCTTTTTTACCTACAAGTACGGCTGGTCCTTTGCCTTTTCTGCCATCTCTTTCCTGCTCACTGAGAGCGCAGGCGTCATGTCCGTCTACCTGTTCATGAAGCGCTACACAGCAGAGGAGATCTATCAGCCTCGTCACCCCAGTTTCTACCGCCCTCGACTCAGCAACTGCTCCGACCACTCGAGCCAATTCCTCCACCCAGAGGCCTGGTCGCGTGGGCGAAGTCCCTCTGACATCTCGAGTGAAGCTTCACTCCAGATGAGCGCCAGCTACCCTGCTCTGCTCAAATGCCCCGACTATGATCAGGTCTCCTCTTCACCCTGCTGAGGGGTCGGCCATCACAGCAGAGGCCGCCCAAAGCTTTCTGAAGGCTCCCTGAAGGATCACATGGGGTCCCAAGGACCTAGTGAGTTTCCTTTCAAGAAAAAGTTACTTAGATATTTAACTTTGAGTTTGATGTTTTTCAGGGATAAAAATATGTGCAGCTTTGACTGTGACCTGAAGAATTAAATATTTACAGCTGAGGTGCTTGTGGATTTAGGGTCAGGGAGGAGAGGCTTATTGGGAGTTTGTCGTTGTAGCAGcacctatgttttttttttcccaggaaGAGGCAAAGTCTGTAGATTTTAGAAGAAAAACCCAATATGACGTTATTCTTTCTGCAAAAGTCTCCAAAAAGTTAAAATCTGGTATACATTAATTACCTTCAAACTTTATCTGAAAGGGGAAATAATGTTCTACTGTATATTTTGGTTTAATTTTATCGTTTCACCCTCCAGTGCCTCATACTGTAgctattttctttttgtgaatATCTCGGCTTCGTCATTTTGCAAGAAATGAATGCATCTTATGCTTTTGTTTCTTCTGTGGCAGTATTTATGTATCATGTCACACtgaaacatcagcaaacctaaCCGTCTCGCTAAGGCGAAGACTTGTGTGAGATGCAATGAAAAGACAATCCATCACCACTATAACAACCATCAGATAGCAGGTGATGACAGTCCTGGAAggaaaccatagactgtaaatatggAAACTCAAGAAGTCCTGTCAACAAGCATCCAGAGGTTGTTGTTGGGTTTGTTTTGTACCTTAAAGACTCTGTTTTGTCTCTAACATCATAACAGTAAGACATGACGAAAATGTTAATTCCTGGTTTGATTTAAATAAGGAGAGACACCGAGGTACATTTATACATCCAGACTGAACAAGCTAAGATCatacatatttgttttatatagATTTTTATATAGTATGTGCAGCTGTTggacattaaatgaataaacGATGAGAGAGTTGATGTAAAGATGATGCTGCGAATTAGGTGCTGTTTTTCCAAGTGTCGGTGTTGTTGTAGCACTGCTTTGCCATAAAACATGTTTGGTACAGTGTGCAGGAGGAGTCATCTGTAAAAATACATGTCCTCACACAGTGATTCTACATTTATCCACTGGAGGGCAGTGCACAGTTTGTTTTGCAGTTTCTTGGCACAATTGTCAAATAAAAATCTTGATTACCTTAAACACTTTGTGGAATTCTCCACAGTATATAGTGTGACAAACATTAAAATTGATGTTTTTACAAGTACTGTTCTGTTGATCCAGTAAATTGATTTTACTGCTTATTTTTCATACACAAATAATGTCAGATGTGTATCTCAAAACCTCACTGTATAAATCCTCA

Function

NR:

description
voltage-dependent calcium channel gamma-5 subunit

GO: NA

KEGG:

id description
K04870 CACNG5; voltage-dependent calcium channel gamma-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823832.1 True 2445 mRNA 0.44 6 12685588 12693357

Neighbor

gene id symbol gene type direction distance location
si:ch73-374l24.1 LOC101487097,LOC103361464,LOC102304961,LOC106957043,LOC103141622 coding upstream 1170 12566360 ~ 12684418 (+)
slc5a11 slc5a11,LOC102796461 coding upstream 499800 12178289 ~ 12185788 (+)
grid2ipa LOC103361735,LOC102310441,LOC102202691,LOC102796762 coding upstream 507830 12151296 ~ 12177758 (+)
e4f1 e4f1 coding upstream 534592 12143460 ~ 12150996 (+)
LOC120575115 haghl,LOC100699516,LOC104918824,LOC101076411 coding upstream 548333 12133972 ~ 12137255 (+)
LOC120574005 LOC101485652,LOC100697553,LOC108239271,LOC107376513,LOC106518736 coding downstream 44891 12738248 ~ 12745057 (+)
dxo dxo coding downstream 55854 12749211 ~ 12753360 (+)
anks4b anks4b coding downstream 68264 12761621 ~ 12765662 (+)
si:ch211-256e16.3 LOC104947690,LOC100695876,LOC102213849,LOC101483797,LOC103360703 coding downstream 73268 12766625 ~ 12774140 (+)
LOC120574126 LOC101483500,LOC100695608,LOC102213391,LOC102786175 coding downstream 81536 12774893 ~ 12781445 (+)
G154385 NA non-coding upstream 116736 12566974 ~ 12568852 (+)
G154379 NA non-coding upstream 161916 12475767 ~ 12523672 (+)
G154367 NA non-coding upstream 283605 12401730 ~ 12401983 (+)
LOC120574756 NA non-coding upstream 343238 12341400 ~ 12342350 (+)
G154307 NA non-coding upstream 467583 12216876 ~ 12218005 (+)
G154410 NA non-coding downstream 41326 12734683 ~ 12734912 (+)
G154447 NA non-coding downstream 89417 12782774 ~ 12827577 (+)
LOC120574706 NA non-coding downstream 196062 12889419 ~ 12904818 (+)
G154494 LOC100710707 non-coding downstream 286896 12980253 ~ 12981635 (+)
LOC120574709 NA non-coding downstream 298546 12991903 ~ 12995560 (+)
G154254 NA other upstream 570396 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other upstream 592030 12089373 ~ 12093558 (+)
LOC120574068 NA other upstream 1460339 11207041 ~ 11225249 (+)
LOC120574482 znf207,LOC108444040,LOC108278632 other upstream 1611762 11063859 ~ 11073826 (+)
G153808 spag9 other upstream 1932690 10752160 ~ 10752898 (+)
G154461 NA other downstream 150066 12843423 ~ 12846597 (+)
LOC120574968 LOC102294452 other downstream 323602 13016959 ~ 13026416 (+)
vasnb vasn other downstream 962658 13656015 ~ 13692303 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other downstream 1075662 13769019 ~ 13781685 (+)
trnat-agu_6 NA other downstream 1076346 13769703 ~ 13769776 (+)

Expression


Co-expression Network