ccnf (ccnf)


Basic Information

Item Value
gene id ccnf
gene name ccnf
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13784836 ~ 13795684 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823957.1
ATGAAAGCGGGCGTCCACTGCCGTTGTTCAAAATGCTACTCAGTTCCGGCACGAAAGCGGGTCCGTAAGCGAACTCCAGCCCTAACCTTGCTGTCTCTACCTGAGGAAGTTCTCCTCTGTGTGCTCCAGTGCCTTTCTGCTGAGGACCTGCTGTCTGTCAGAGCAGTTCACTCCCAGCTGCGGGACATTGTTGACAACCACTCCAGTGTATGGGCCAGGGTCAGTTTCAGGGACACATGGCCATCCCCCAACACATTATGGCTATTTGAAAGAGCTGCTGAGAAAGGGAATTTTGAAGCGGCTGTGAAGCTAGGGATTGCTTATTTGTACAATGAAGGACCATTGTTGAGTGATGAGGGGCGAGCGGATGTATGTGGTCGCAAGGCCTCCCGCTTCTTCAGCCTGGCAGAGAGCCTGCACTCTCCCACGACAGATCCCTTCATCTGGGTGTTCATCCGACCACCGTGGTCTCCCACCGGCAGCTGCTGCAAGGCCGTGGTGTTCGACCGTCTCAAGGCTGAATGTGACAGCAACGCGGAGAAGAGAGGACCCCTGTTGCACTGTTTGGCCAGAGTTTTACAGCTGTTTGAAGGCGATGAAAGACGCTCCGATGCCATATCTATGTTGGAGGAGTCGTCCCAGGCTGGCTGTCTACAGAGCTCTTACCTCTTGTGGGAACACAACCGGAAAGCAGCTATGGCAGATCCAGGCCGGTACCTCCAGTATATCCGAACCCTCAGGGACTATGCTGGCAAAGGATGCTGGGAGGCTCAGCTCTCCCTGGCTAAAGTGTGCAGCAGTGGGAATCCGCTGGGTCTGGAGTCAAAAGCCTGCTCTGACTTGGTGGCTCAGCTTTTCAATTCCTCTAACCCGGCATCACGACCCTGCACTCAGGGCATCCTGAGACAAGGCATCAAGGACACCATGAGGTACATCCTAGTGGACTGGCTTGTGGAGGTGACCACCATGAAGGACTTCTCCAGCCTGACGCTGCATGTGACAGTGGGTTGTGTGGACCGCTACCTGGCCCTGCGCTCAGTCCCCAAGGCTCGCCTCCAGTTATTGGGAATCGCCTGCATGGTGGTTTGCACACGCTATATCAGTAAAGAAATCCTGACCATTCGTGAAGCTGTCTGGCTTACAGACAACACCTACAAATATGAGGACCTGGTTCGAATGATGGGGGAGGTTGTCTCTGTGCTGGAGGGAAAGATCAGGAGCCCCATACTGCTGGACTACGGGGAGGTGCTGCTGTCTCTGCTCCCTCTGGAGAGGCGGACCACTCACCTATTCAGCTACATCAGCGAGCTGTCGCTGCTCTACTCTGCCCTTGCCACACCACCACCTTCCAAACTGGCATGCGCTGTACTACTGCTTACACGAGCACTACATCACTATGCTCCTGTCTGGCCCAGCCAGTTAGTTGACTACACAGGCTTCTCCAAGCAAGACCTCACTTCCCTTTCTGTGCTGCTCTATGTCAAGTGTTTCAGTCAAGACGTTCCCAAAGATTACAGGCATGTGTCTCTTACTGGCGTTAAGCAACGGTTTGAAGATGAGGCCTACCAGCACATCAGCAAAGAAAAGGTGATGGATTTTAAAGAGCTGTGTCAGATCTTGGAGATTCCTGAGGTGGAGCCTCAGATGGAGCCTCCCAGTCCCACTGGTCAACCAGCAGACATCCACACCTTCCTCGCCTCTCCATCCAGCACCAACAAGAAGAGACGCGATGAAGGCATGCAAGCAAACAGAACAAGCTTTGTGGCCACGCCCACTGCAGAGCTGTCAAATCAGGAGGAGACGCTGCTGGGTGACATCCTTGACTGGAGCCTGGACACTTCCTGTTCTGGTTATGAGGGGGACCGGGAGgaggagagcgagggagaaaaaGATGCTGATTCTTCCATGATATCCCTTAAACTGCATTCGCTGACCGATGCAGACAAAAGACTAGAGCACTGCAGAGCCTTGTCCAGCGATGAAGACAGCTTCTCTGAAGCGGAAAGGGATGTGAGCAAGGATTGCCAAGACCAGGAACTCCTTTCCTTTTCTACAGACCTTCACAGTTCAGGTTACTCCTCTGTCCAGAGTGTTAGCCCTTCATCCAcatgctgctcctcctccctcatgccTTGCACATTCAAGACCTTTACCACTTCCCTGGGCACAGCCTCCGCCAATGCCCAGCCAGGCTTCCGCCTTCTGGTGCCCATGCAGAGGCCCCGGGGCACCTCCAGCAAACAAGTGAAGAGGAAGAACTCGGCAGCTCATAGTGGAGGTGAGGTGgataaagaagaggaggaaggagacaaGTATTCTGCCAATGCGGGGTTTCTGAGCCTATAGACCGTGGTTGTTCGACTTGCCTCAGGCTCAGTTATCCTCCAGCACTTTTCTTTAGTTCTCGATGCTGTTCCTCACTCCTGTCAGTCTGCACTGAGCCATTTTGTCAGAAGATCAAGAGACGTTTAGCTTAAAGGCAAGTAAGGGAAAACAAATGAATTGTGTTCACGTTTACAGGCATAGCACAATAAAATACCTCCCATAAACCTAGACTCGCAGTCAGCTCTGAAACCACTGGAACATGAATTGAGTTTCCTCAGGACCATTTCTGTTTTACAGCCTTCTAAAACCACAATCACATTGTATATGATAGTTGTAAAAGCAATGAAACCTCATggactttttctttcttttttttcttttggtggGGGGGGAGAAAGGTGTTCATTGTTAAAATCAcattttggaagaaaaaaaaacttaaatattgCTGTCATCttattgtgattgttttgaTTATCATAGTTTCTGATATGCACTGTCTGTACAAGACTATCTTGTATTTGAATGTCATCAGTAGGTGACTACTGTCATCTAGCTGATGAACATGTCTGCATCTGAAGCCTAAAGAAAATATGATTGTATGAGTTCCTCTTGTTCAGTTTTTACCTAACTTCTACGTACGTTTGCCAAAGGTACTGTAGTGGTGTCAGCTGTGTTTTCAGGGGCGTCTACGTGAATAGAAACGGAGCTGTGAAATGAGTAttttaagtaaataagtaaTCTGCATCTTCTAGAGTACATATTCACCAGTCGTGCTGTTAATATTTTTTGATCAGTATTACTTAAGAGACCTACAGTATAGCACCTTATCCCATCAGGAACAGCAGATGTTCAATAAGGTGTTCTGATAATGGAACTAACCAAGAATCACCAGCTGGATGAGTATCATACAAACTTCAGCGTATCATCCAGATGTTTAGTGCTTCAAAGTCATTAACTATTTAGCTCAACTGAATGAGGCACTCCATGTGACTCACATGCTGGTAAATTGTACTTGATGTGCTTTTCCTCCCATCTGAATTAGGTCTAGCACTTAGAAGGAGAACAATTcaatgaaatgtaacaatttccACGCTTGAAACAATCAATGCTTAAGTAATTTTGGATGGATTTGCTTTGCCTTCTTGAAGCGAAAGGGAAGTTCAGACACTAAAGGAAAATTATTACCTGATAGGATTTTGAAAGTACTGTATGCCTCATTCAGGAGACGGAGTACACAATGTCTAAAAGTCTGACtgactgtatacattttaaactgtTACACCAGACTAGTTATAACCTGttgaactttttttatttttataaatgtacATAGTACTATATGTATAAATGGAGAAAGACAAAGAACATGCCACTACTACTTGAAATAGTTTTTGCTTCATTCCAAAAAGGCAGATTCTTAGTGAAACTTTTTCTACAGTACAGTGTTTTCTCAATAGACCTGTGATGTGAATATGTAATTTTGTATCgagttaaaataaaacaagccaTCATGCAa

Function

symbol description
ccnf Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in several processes, including cellular protein metabolic process; negative regulation of centrosome duplication; and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within cell division. Predicted to be located in centriole. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in several structures, including margin; nervous system; optic vesicle; tail bud; and ventral mesoderm. Orthologous to human CCNF (cyclin F).

NR:

description
PREDICTED: cyclin-F isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K10289 CCNF, FBXO1; F-box protein 1 (cyclin F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823957.1 True 3844 mRNA 0.47 17 13784836 13795684

Neighbor

gene id symbol gene type direction distance location
dnaja3a dnaja3,LOC102777832 coding upstream 30469 13748920 ~ 13754367 (+)
glis2b glis2,LOC102778126 coding upstream 153081 13602828 ~ 13631755 (+)
LOC120574401 NA coding upstream 324009 13454492 ~ 13460827 (+)
LOC120574400 gde1 coding upstream 330619 13448627 ~ 13454217 (+)
LOC120575071 dnaaf5,LOC102780779 coding upstream 336425 13423545 ~ 13448411 (+)
abca3b NA coding downstream 1044 13796728 ~ 13827791 (+)
LOC120575447 LOC107083151 coding downstream 36887 13832571 ~ 13838091 (+)
LOC120575448 NA coding downstream 44465 13840149 ~ 13846908 (+)
LOC120575450 rnps1,LOC104933647,LOC103363435 coding downstream 67827 13863511 ~ 13866556 (+)
LOC120575449 adap1,LOC103363436,LOC106518683,LOC108241370 coding downstream 71600 13867284 ~ 13884326 (+)
G154682 NA non-coding upstream 192202 13589517 ~ 13592634 (+)
G154661 LOC106942609 non-coding upstream 290975 13492585 ~ 13493861 (+)
G154639 NA non-coding upstream 300118 13484039 ~ 13484718 (+)
G154634 crebbp,LOC108247643,LOC106518707 non-coding upstream 309388 13474159 ~ 13475448 (+)
G154603 NA non-coding upstream 379142 13356223 ~ 13405694 (+)
LOC120575454 NA non-coding downstream 150922 13946606 ~ 13954723 (+)
G154777 NA non-coding downstream 254147 14049831 ~ 14056966 (+)
LOC120575155 NA non-coding downstream 312097 14107781 ~ 14241105 (+)
G154811 NA non-coding downstream 489490 14285174 ~ 14287984 (+)
G154824 NA non-coding downstream 530598 14326282 ~ 14326489 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other upstream 3151 13769019 ~ 13781685 (+)
trnat-agu_6 NA other upstream 15060 13769703 ~ 13769776 (+)
vasnb vasn other upstream 92533 13656015 ~ 13692303 (+)
LOC120574968 LOC102294452 other upstream 758420 13016959 ~ 13026416 (+)
G154461 NA other upstream 938239 12843423 ~ 12846597 (+)
G154743 LOC102293104 other downstream 51455 13847139 ~ 13854286 (+)
si:dkey-282h22.5 NA other downstream 1185552 14981236 ~ 14984745 (+)
LOC120574428 NA other downstream 1190016 14985700 ~ 14986913 (+)
LOC120575440 LOC102304323 other downstream 1196329 14992013 ~ 14992508 (+)
G155088 NA other downstream 1340107 15135791 ~ 15139706 (+)

Expression


Co-expression Network