sdr42e2 (LOC103360721,LOC100712049)


Basic Information

Item Value
gene id sdr42e2
gene name LOC103360721,LOC100712049
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12817115 ~ 12841345 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824237.1
aaaagacgatggactcttcagaagagGTTGCTTTTCAGCATGACACTGTGTGAAAAAGGATGGATCCTTTACCCCAAAAAACCTTCCACCCACATGGGACTGAGGCCCCGTCACCCAGTGTGAATAAACTACAGAACCAGAGGAAAGCAGACGACCAGGAGCAACTGATCCAGCATCAGTTTTTCAACTCATTATGGACATCTATGGAGCTGTGCGGTCCCAACATGAGTGAGACTGGAGGCTCTCTCTGCCAGATGAAGCCGCTTCCCTGCCACAGTGTCCCCCTTTGTCGCCTGCAGGCCAGCGGGCACCACATGCGTAACTTCCCCCACCAGCCATGGCTCAACCACCCGGCCCCGGCCGTGGCCTCCAGCCCGGCCGTGGCCACTCGCCACAGGGTAAGTGGAGCCGTGGCAGCCAGCTGCAGCAACCCAGAGTGTGTGGTCTCCAGACTGGGAGAGGAGGCCGCACTGGCACCACGCGTCTCCACAGGAAAGGTGGTGGTGACAGGAGGAGGGGGATACTTTGGGTTCAGGCTAGCGAGAGAACTGGCCAGTCAGGGGATGTCGGTGATCCTTGTGGACATTAACATGCCTCCCTGTGATATCCCTGATGGAGCGATCTTCTATCAGAGTGACATCCGGGACTATTCTTCCCTCTATAAGGTGTGTGAAGGGGTCGACTGTATATTCCACACAGCGTCTTACGGCATGTCTGGACCAGAACAGCTGAAAAAAGAGCAGGTGGAGTCAGTCAATGTTGAAGGGACCAATAATGTCATAAACGTGTGTAAGGAGAGGAGCATCCCCAGGCTTGTGTACACCAGTACCATCAATGTGGTGTTTGCTGGGAAACCAATTGAGGAGGGTGATGAGGTCTCGGTGCCGTATGTGCCCCCCGACGTaCACATCGACCACTACTCCAGAACCAAAGCGATTGCAGAGCAGATGGTCCTCTCTGCCAACGGATGCTCCCTGAAAGGTGGAGGCCTCAGGCTTCGGACCTGCGTCCTGCGGCCCTGTGGCATCTACGgaccagaggagaggagacacctCCACAGAGTGATGgtgaaTGTGGAGCGCCGGCTGTTCAGTTTCAGATTTGGTGACCCCCGGGCCAGGATGAATTGGGTACATGTAAATAACCTGGTTCTGGCCCACACGCTGGCAGCTGAGGCTCTCACACTGCAGAGGAGCTGTGTTGCTAGTGGACAGGCCTATTTCATTAATGATGGAGTTTCAGTCAATCTGTTTGAGTGGTTGACACCTTTGTTTGAAAAGCTGGGCTACAGCCGACCGTTGATAAACCTGCCTGTTTCACTGGTCTATTTAGCAGccatcctggttgAATATTTGCATGTAGTTCTGAGACCTGTGATAGAAGTGCCTCTCCTCTTTACCAGAAGTGAGGTGAGGAGCATAGCTGTGAGCCACACCTTCAAGATCGACAAGGCCCGTCAAGAGCTGGGTTACTGTCCAAAGCCCTACAGCCTAACGGACTCTGTGGAGCAGTACCTGAAGTCCAGACAGCCTCGCTCCAGCTTGGCTCTTTTCAGCCTCTCCTGGACCTCCCAGCAGCCTCAAcacctcctcctgctgctgctgatgggcCTCAGCTTGCTGCTACTGATGCTATCCTGCATATTCTGTCAGACCTAAACTATACTCACTGGAAAAGTACTGGATGGACAGCTGCACAATAAGCTGTTTCAAATTTGTTTGGAATTTAAATGTTTGATGGTGTATTCTCACCACATGTGACGTATTAATGAAGCCCACCAGATGCAATAAAATATGCCCTAAAATAAGTCTTCAAAATGTCAGGTTATATAATAATTTGTTCCACCTTCTTGATGTTGGTATATATCTGTCTGATTTCCAAATGATGAAAACTGAGTTATGTAAATGTTAGTGATTTATCAACAGTTTGAATTTatgatttcattaaaaaaaatctaactttGTACTACAAATATTATAATTTTAAATTATTG
>XM_039824238.1
ttgccaaaaagcattgttaccacagagaaataatctaccaaacacaaatttataAAAGGGTCTATACCAGGGGCCGGGCCATAAATCATAAATCTGTCCGTGGCTTTAGGCTATTTATTGATATAGTTTCATATCAGATTATTTAAATGGAATAGTTTATTTGACATTAATGTATTACACTGAattaacaatgtaactgtagccATGAGTAAAAGCGACCCGTTCCTCTATTTGTCTCCCTCCCAGCCATCCACCATAGCTCCTCCCACTTCCTTATTTCCAATTTAAAATAGCCTACTAATGAGCACTGTCTATGCTCATGAACCTTCTTCCCCCTCCATGACTTCCCCAGACCCGCCAACGCTAATTTAATCATCTTTAGCCTATTATCATTGAACCATTAATATTACGTAGGCTAGTATTTTATCAGCTTTTGTAAtcaaaatacaacatttttcttttaatagcttaattattgtctattttaacgttaggcctactgtaggctatttgtttaaactttttttttttttttatatagcctTAAACACTTAAATCGTGTAGCCTGGCCTAGCCTACTCTTGGGAGCAATCCTTGTCTCTCTTGTGGCAGTGCCAACTGTATGGAATCTGTGGGGTTAAGCTGGTTGTTTCACTTTAATGTGAAGTTAAAGGGAACCACATTAAATGTACTTGGGCACTTAATAAGGGGCATGGAAGGTTTCTGCTCGTCCACCTGATGCTACAGGAGCTGGAAACACGATCCTCACTGCAACGGGGCTGCGTCCTGCATCCAGACATTACGGTAGGTGGGTCCTCTACAGGTGAAGGTACAGGGGATGAAATGGGACGCGTCAGGAGCCACCACGAGAGGAAAGGGCATGTAGCCTACCTTATAGGCTGAATTATTTCATGAGCCAACGGGCACAGGTATGGATGTGAGAGATCGAAAGGAATGTTAagGACATCTATGGAGCTGTGCGGTCCCAACATGAGTGAGACTGGAGGCTCTCTCTGCCAGATGAAGCCGCTTCCCTGCCACAGTGTCCCCCTTTGTCGCCTGCAGGCCAGCGGGCACCACATGCGTAACTTCCCCCACCAGCCATGGCTCAACCACCCGGCCCCGGCCGTGGCCTCCAGCCCGGCCGTGGCCACTCGCCACAGGGTAAGTGGAGCCGTGGCAGCCAGCTGCAGCAACCCAGAGTGTGTGGTCTCCAGACTGGGAGAGGAGGCCGCACTGGCACCACGCGTCTCCACAGGAAAGGTGGTGGTGACAGGAGGAGGGGGATACTTTGGGTTCAGGCTAGCGAGAGAACTGGCCAGTCAGGGGATGTCGGTGATCCTTGTGGACATTAACATGCCTCCCTGTGATATCCCTGATGGAGCGATCTTCTATCAGAGTGACATCCGGGACTATTCTTCCCTCTATAAGGTGTGTGAAGGGGTCGACTGTATATTCCACACAGCGTCTTACGGCATGTCTGGACCAGAACAGCTGAAAAAAGAGCAGGTGGAGTCAGTCAATGTTGAAGGGACCAATAATGTCATAAACGTGTGTAAGGAGAGGAGCATCCCCAGGCTTGTGTACACCAGTACCATCAATGTGGTGTTTGCTGGGAAACCAATTGAGGAGGGTGATGAGGTCTCGGTGCCGTATGTGCCCCCCGACGTaCACATCGACCACTACTCCAGAACCAAAGCGATTGCAGAGCAGATGGTCCTCTCTGCCAACGGATGCTCCCTGAAAGGTGGAGGCCTCAGGCTTCGGACCTGCGTCCTGCGGCCCTGTGGCATCTACGgaccagaggagaggagacacctCCACAGAGTGATGgtgaaTGTGGAGCGCCGGCTGTTCAGTTTCAGATTTGGTGACCCCCGGGCCAGGATGAATTGGGTACATGTAAATAACCTGGTTCTGGCCCACACGCTGGCAGCTGAGGCTCTCACACTGCAGAGGAGCTGTGTTGCTAGTGGACAGGCCTATTTCATTAATGATGGAGTTTCAGTCAATCTGTTTGAGTGGTTGACACCTTTGTTTGAAAAGCTGGGCTACAGCCGACCGTTGATAAACCTGCCTGTTTCACTGGTCTATTTAGCAGccatcctggttgAATATTTGCATGTAGTTCTGAGACCTGTGATAGAAGTGCCTCTCCTCTTTACCAGAAGTGAGGTGAGGAGCATAGCTGTGAGCCACACCTTCAAGATCGACAAGGCCCGTCAAGAGCTGGGTTACTGTCCAAAGCCCTACAGCCTAACGGACTCTGTGGAGCAGTACCTGAAGTCCAGACAGCCTCGCTCCAGCTTGGCTCTTTTCAGCCTCTCCTGGACCTCCCAGCAGCCTCAAcacctcctcctgctgctgctgatgggcCTCAGCTTGCTGCTACTGATGCTATCCTGCATATTCTGTCAGACCTAAACTATACTCACTGGAAAAGTACTGGATGGACAGCTGCACAATAAGCTGTTTCAAATTTGTTTGGAATTTAAATGTTTGATGGTGTATTCTCACCACATGTGACGTATTAATGAAGCCCACCAGATGCAATAAAATATGCCCTAAAATAAGTCTTCAAAATGTCAGGTTATATAATAATTTGTTCCACCTTCTTGATGTTGGTATATATCTGTCTGATTTCCAAATGATGAAAACTGAGTTATGTAAATGTTAGTGATTTATCAACAGTTTGAATTTatgatttcattaaaaaaaatctaactttGTACTACAAATATTATAATTTTAAATTATT

Function

NR:

description
PREDICTED: putative short-chain dehydrogenase/reductase family 42E member 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824237.1 False 1993 mRNA 0.50 14 12817115 12841345
XM_039824238.1 True 2758 mRNA 0.47 12 12829807 12841344

Neighbor

gene id symbol gene type direction distance location
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding upstream 9219 12782750 ~ 12807896 (+)
LOC120574126 LOC101483500,LOC100695608,LOC102213391,LOC102786175 coding upstream 35670 12774893 ~ 12781445 (+)
si:ch211-256e16.3 LOC104947690,LOC100695876,LOC102213849,LOC101483797,LOC103360703 coding upstream 42975 12766625 ~ 12774140 (+)
anks4b anks4b coding upstream 51453 12761621 ~ 12765662 (+)
dxo dxo coding upstream 63755 12749211 ~ 12753360 (+)
mfsd13al LOC104947686,LOC100692111,LOC102297699,LOC101482249 coding downstream 12684 12854029 ~ 12859158 (+)
LOC120574877 LOC103393031,LOC103469206,LOC105930142,LOC107092540,LOC104925717,LOC108239269,LOC106518725 coding downstream 23590 12864935 ~ 12872915 (+)
proza NA coding downstream 82025 12923370 ~ 12931320 (+)
gprc5ba gprc5b,LOC103360712 coding downstream 97339 12938684 ~ 12952238 (+)
LOC120575071 dnaaf5,LOC102780779 coding downstream 582200 13423545 ~ 13448411 (+)
G154410 NA non-coding upstream 82203 12734683 ~ 12734912 (+)
G154385 NA non-coding upstream 248263 12566974 ~ 12568852 (+)
G154379 NA non-coding upstream 293443 12475767 ~ 12523672 (+)
G154367 NA non-coding upstream 415132 12401730 ~ 12401983 (+)
LOC120574756 NA non-coding upstream 474765 12341400 ~ 12342350 (+)
LOC120574706 NA non-coding downstream 48074 12889419 ~ 12904818 (+)
G154494 LOC100710707 non-coding downstream 138908 12980253 ~ 12981635 (+)
LOC120574709 NA non-coding downstream 150558 12991903 ~ 12995560 (+)
G154535 NA non-coding downstream 186787 13028132 ~ 13034382 (+)
G154555 NA non-coding downstream 276049 13117394 ~ 13117721 (+)
G154254 NA other upstream 701923 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other upstream 723557 12089373 ~ 12093558 (+)
LOC120574068 NA other upstream 1591866 11207041 ~ 11225249 (+)
LOC120574482 znf207,LOC108444040,LOC108278632 other upstream 1743289 11063859 ~ 11073826 (+)
G153808 spag9 other upstream 2064217 10752160 ~ 10752898 (+)
G154461 NA other downstream 2078 12843423 ~ 12846597 (+)
LOC120574968 LOC102294452 other downstream 175614 13016959 ~ 13026416 (+)
vasnb vasn other downstream 814670 13656015 ~ 13692303 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other downstream 927674 13769019 ~ 13781685 (+)
trnat-agu_6 NA other downstream 928358 13769703 ~ 13769776 (+)

Expression


Co-expression Network