LOC120574400 (gde1)


Basic Information

Item Value
gene id LOC120574400
gene name gde1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13448627 ~ 13454217 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824663.1
catatATATTTCAAACTTGATATTGACGATAGCAGTGAAGctgcctctcctccttcctcccatGCATCCTCTTTACAAGAGCTCTCTGACCACCTCCACCATGTAGTCACCTGAGTGCTGACAGCAGAGCTTTCTCCATGGCATCTTTCTAAACAACGACTCTTTCATCCTCCGGTCCGATCGAGACATACAGCCAGTATATAGGCCACCGTTCGTCATGCTGCAGATCGGAGATGAGGTGGTGTATTTCTCGGCGGTGTTTCTGCTGGTGGTGTTGGGGACGCGGAGCGCCACTGGTGCCTCCCTCCTCACCGCATTCCTCTACGTCTTCATGGTGATGTTCCGGTTTCCTCCGGTGCCAGGGGACCAGGCCGGCCGCGTCCTCCGGCCCAGGGCTCCATCAGGCGGCGTCCCGGTGGTTGCGCACCGCGGAGGCAGCCACGATGCTCCGGAGAACACCTTGGCAGCGATCAGAGAGGCCAGTAGGAACGGGGCAACCGGAGTGGAGCTGGACCTGAGTTTCACAGCCGACGGAGTGCCCGTGCTGATGCATGATGAGACTGTGGACCGCACCACCAACGGCTCTGGACCTGTTAGCAAACTGCAGTTGGTCAAACTTAAGAGGCTAGATGCTGCTGCTTGTCACAGGCTGAAGGACAAGTTCAGTGGTGAGAAGGTCCCAACTCTGCAGGAGGCGGTGGAGGAATGCATCAGACACCAGCTGACTATTTTCTTTAATGTCAAAGATCAACCTGATAAGGCTGCAGCAGTGCTTCATGAGATGTATAAGAAGTTCCCTGTCCTTTACAATTCCAGCATTGTTTCTTCCTTTGAACCCAAAGTCATCTACAAGATGCGTCAGACTGACCCCAACGTGGTAACAGCTCTTATCCACCGCCCCTGGAGACTGAGCCGCTTTGGCGATGGCACTTCTCGGTCCCTGTCAACATCGGGTCAGCTGTGGATGGGGGTTCTGGACGTCTTGTTGGACTGGGCCCATCACCACATACTGTGGAAACTCTGTGGGGTCTCTGCCATCTTCATGCAGAAAGACTTCATCTCACTGGACTACGTTCAGTACTGGGCAGAGCGAGGTGTGGAGGTGGTGGGCTGGACTGTTAACACCGCTGTGGAGAAACACTACTACCAAAACCTGCTGAAGATTGGTTACATCACTGACAGTCTGCTGGAAGACTGTGATCCTCATTACTAAATGATCGCACCCACACGTACAGGGAGGATTAAAATCCCAAGTGTTTAGACTTGttaaatagaacattttacagctTCTTGGAAAAGTTGGAAGTTAGATACTCTTTGGTTAGACATAAGACTACACAACTTCTATAATGAATACATTTCCCAGAGTCTTGTCCTTTCAAAGACcacacaaatactgaaatatgtaaatgaattaattattaAGTGGAGGAAAGCTAGATATTTGGTGCTAACTAGCTCTGTAGTGGCAATCGAACAATCCAAGCTTTATATGATTTACTATAGAGGTAAGAACACATCATTACCTGCAGCTAGCATGCAGGTAATTTCTCTTTTAAATCTACACACACCTTAAACTATGAAGACTGGGCTGTATACTTCCTAGTCTTTATCCTACTACCAGCAGCAATACCTCCAGCTCTCCTGGACCAGGGATTGGGATTAGGCTACCTTAAAGATCTTTTCTACCTTTTGTGCTGCTCTTTCAGAGGCTTTAAAGAGACATATAGTTGTAACATTAGACATGTTGGCATCATATCAATGCTGGCTGTCATGATATGTATTTACTAATAGACTAGAAGATCTGTTGTTAATATTGTGACATGATGATACTTGATTGTTCAGAAACTTgccttctgtcattaagtgccACAGCTGCACAAATACACCAGGAACTTTGAATTAAAATGATATCTGATTGTAAGCTTCAAAGGAGGGAAAGTAATGCACCACTGAATCCTGACACACATGTGGTGGGTGTGAGTGTAGGTGTCAAGGCAGAGACGAGTCAACATAAAGTCCAAAATACTGTATTTGTATGATGTAACATCCTCATTATGAACCATCAAAGAACGAAAACTATTTTGTGATCATggctgttgtaaaaaaaaaaaaagttgagtcCAAATTTCATCCCATACACCTGAGAAATGTTTGACTACATACAATAAAACCTGTAATATATTGATTTAACTTGATATCACAGTGCTAGGAATGTAACTGAGAGGGAGAAATACTGATTCACTTCCTTTTATTTTAACTTGTTTTGCCTGAAAACATTCTTTACACCTCAATATATTTAAATGTGCTTATCagaatatgctttttttttaagtatttaagGAGTTCTTGTCGTGCTAAGAATGTCTTGTATTGTCTTATATTCTAATAAGAGATACATCAACATAGGGTCACTCAACAAAATATGTTATGTTCCTTTTTAGGCAGAAATAAATCTTTAGAATGTAAATTCAGTTTGTAAAACTGATGGAAGTTAATAATGCCTTTTGGGTGAACGTCCTAACTTCttatgaatgttaaaaaaagtatcAGTATGCGAGACTTTTCTTTGTATTAATTTCTGTAAATGTTCAGCTGGGCGTCTCTGTCAACCCAGCTTTGAATTTCACCACACACTCATTCAGTATGTAGTAAAGCTTGGTTGAATAGTAAA

Function

symbol description
gde1 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. Orthologous to human GDE1 (glycerophosphodiester phosphodiesterase 1).

NR:

description
PREDICTED: glycerophosphodiester phosphodiesterase 1

GO: NA

KEGG:

id description
K01126 E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824663.1 True 2674 mRNA 0.43 6 13448627 13454217

Neighbor

gene id symbol gene type direction distance location
LOC120575071 dnaaf5,LOC102780779 coding upstream 216 13423545 ~ 13448411 (+)
gprc5ba gprc5b,LOC103360712 coding upstream 496389 12938684 ~ 12952238 (+)
proza NA coding upstream 517307 12923370 ~ 12931320 (+)
LOC120574877 LOC103393031,LOC103469206,LOC105930142,LOC107092540,LOC104925717,LOC108239269,LOC106518725 coding upstream 575712 12864935 ~ 12872915 (+)
mfsd13al LOC104947686,LOC100692111,LOC102297699,LOC101482249 coding upstream 589469 12854029 ~ 12859158 (+)
LOC120574401 NA coding downstream 275 13454492 ~ 13460827 (+)
glis2b glis2,LOC102778126 coding downstream 148611 13602828 ~ 13631755 (+)
dnaja3a dnaja3,LOC102777832 coding downstream 294703 13748920 ~ 13754367 (+)
ccnf ccnf coding downstream 330619 13784836 ~ 13795684 (+)
abca3b NA coding downstream 342511 13796728 ~ 13827791 (+)
G154603 NA non-coding upstream 42933 13356223 ~ 13405694 (+)
G154602 NA non-coding upstream 179337 13268919 ~ 13269290 (+)
G154586 NA non-coding upstream 214306 13234113 ~ 13234321 (+)
G154555 NA non-coding upstream 330906 13117394 ~ 13117721 (+)
G154535 NA non-coding upstream 414245 13028132 ~ 13034382 (+)
G154634 crebbp,LOC108247643,LOC106518707 non-coding downstream 19942 13474159 ~ 13475448 (+)
G154639 NA non-coding downstream 29822 13484039 ~ 13484718 (+)
G154661 LOC106942609 non-coding downstream 38368 13492585 ~ 13493861 (+)
G154682 NA non-coding downstream 135300 13589517 ~ 13592634 (+)
LOC120575454 NA non-coding downstream 492389 13946606 ~ 13954723 (+)
LOC120574968 LOC102294452 other upstream 422211 13016959 ~ 13026416 (+)
G154461 NA other upstream 602030 12843423 ~ 12846597 (+)
G154254 NA other upstream 1333435 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other upstream 1355069 12089373 ~ 12093558 (+)
LOC120574068 NA other upstream 2223378 11207041 ~ 11225249 (+)
vasnb vasn other downstream 201798 13656015 ~ 13692303 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other downstream 314802 13769019 ~ 13781685 (+)
trnat-agu_6 NA other downstream 315486 13769703 ~ 13769776 (+)
G154743 LOC102293104 other downstream 392922 13847139 ~ 13854286 (+)
si:dkey-282h22.5 NA other downstream 1527019 14981236 ~ 14984745 (+)

Expression


Co-expression Network