ptger1c (LOC104954248)


Basic Information

Item Value
gene id ptger1c
gene name LOC104954248
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16078576 ~ 16082640 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824900.1
CCAGGGAGAATGAGAATCTGTCAGAGAAGCAGGGGGAAAGAAAGGGAAGACAACGAGAGCAAATGATTGTGAACAATAGCGATTACTAAACGTGGCCAATCAGGCAGCTCTCATTTACTCTGCGCCATCCTAAATAATCCAGTGTTCATCCGGAGGCGTTTGATGATGACACTGAAGATGAGGACACCGCCCATACTCGTTACTTTGTTTTCTACCTCTTCTACGCCGTCCATCCTACACCAGAACCTGAAAATCAACTCTTCTGAACAGCTAAGTCCCTGGTTGAACAACAGCACCTGGCCACCGGTCAACTCTTCAGGTTTAGGGATGTCCTGCTTCACTATGACATTTGGCGCCATCTCCAACCTCACGGCTCTGGGCATCCTGGCTAAGTCCCGAGTCCGATTCCGCCGCAAATCCAAAGCACCATTTATGTTACTAACAGTGGCTTTGCTTTTGGCTGACCTCGCAGGTCATATGATCTTAGGCGCCTTTGCTTTGTATCTGCACATAGATCAGAGGTATAAAATACAGGCCGAGAAGCCCAACAAAGAATTCTGTCAAATTTTTGGGGCAAGTATGGTGTTTTTTGGCTTATGCCCTTTGCTGTTGGGTTGTGCCATGGCAGTGGAGCGCTGTGTGGCCATCACCCAGCCCTTTTTCCACGCTGCTATGATCACATTGGCTCATGTATGGCGAGTTGTGTTATTTCTGTCCTCTCTTGCACTTGTGCTGGCAGTTCTACCTTTATGTGCTGTGGGGAATTACACTATCCAGTCTCCTGGGACATGGTGTTTCTTGCCTATCCATGGTCCACAGTCTACAGCTGACACCAACCTGGCTGTGGCCTTCTCATGCCTGGGCCTCACTGCACTTGTTCTTTCCCTACTCTGCAACATCCTGAGTGGTCTGGCATTGCTGCAAGCCAGAATGAAGTCCcacaatttaaatacaaaatcaGCAGCTCACTGCGCTCGTCGTACATCGTCCACGTCTTCCTCCTTGTTTTGTTCGTTGGATGTAGAGATGATGGCGCAACTGGCAGTGATCACTGTGGTTTCCTGTGTATGCTGGAGCCCCTTTCTTATCCATATTCTTGTGATGCAGTTCAATCAAAGAACATCAACCCATGAGAAAGATGGATTTATTCTTCTGGGCTTACGTATGGCCTCTTGGAATCAGATCTTGGACCCTTGGGTGTACATCTTACTGAGGAAGGCAGTGCTTTTCAGACTTTGTTGTGCTTtctacacacagagacccacagtTACAGAAAATAGGTTctgtgcagacacacacaggcaggcctGACCATGTTGCTCTTGGACTTTTTCCTCCTACTGAAATAAAGTATTTGTGTGTTGTGAAATTATTTTACTTTGCTGTGTTATTTTTTAACAGGGCTCAGTAAGGTCCATATTCAGCAAGCCAAGCATCTACACGGCAGCAGTGTGAACAAGGGCTGAAAACAGACTTTCccaacatttcccaaaatgtagtTAGTAGTCTGTGCCGGTGCCACTATCAATAGCAGCCACCTGCAAATCGGGTGGTTGGGCAATTGGGCGGGGTTATTATTGTCCAATCAAAATTGAGAAAAGCTTGACAAGCGCCGCATGTAGCAAATGGCTGAGCTGCTGGAGAAGCCTCACACCCGGGGTGGGCGGTGCTTTTTTGGCAATGACTCTATTCAATATGGAGTACAGAAAATAGCCTGATTCGCTCTGCATTTCAGTGCTCTCATAGAGTTTTCGATCACTCTTGCATTTCGGGC

Function

NR:

description
PREDICTED: prostaglandin E2 receptor EP1 subtype-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824900.1 True 1774 mRNA 0.47 3 16078576 16082640

Neighbor

gene id symbol gene type direction distance location
LOC120574506 NA coding upstream 1006 16067191 ~ 16077570 (+)
ppap2d LOC104918584,LOC104945815,LOC103364129,LOC101077623 coding upstream 206226 15856143 ~ 15872350 (+)
tnfsf14 NA coding upstream 233939 15835598 ~ 15844637 (+)
dnm2a dnm2,LOC102793658,LOC101473937,LOC102206614 coding upstream 243972 15796625 ~ 15834604 (+)
trim35-12 LOC101076486 coding upstream 336856 15737932 ~ 15741720 (+)
LOC120574519 NA coding downstream 16418 16099058 ~ 16101743 (+)
pgls pgls coding downstream 21425 16104065 ~ 16111351 (+)
colgalt1a colgalt1 coding downstream 28777 16111417 ~ 16118527 (+)
LOC120574504 gmip coding downstream 36469 16119109 ~ 16135739 (+)
lmx1al LOC104952501,LOC103364142 coding downstream 53426 16136066 ~ 16153714 (+)
G155342 adgrl1,LOC103392844 non-coding upstream 178054 15893874 ~ 15900522 (+)
G155346 NA non-coding upstream 186542 15891095 ~ 15892034 (+)
G155257 NA non-coding upstream 346761 15661368 ~ 15731815 (+)
G155212 NA non-coding upstream 534027 15544242 ~ 15544549 (+)
G155197 LOC104918611,LOC104960327,LOC102777936,LOC100691075,LOC101487576 non-coding upstream 570257 15507053 ~ 15508319 (+)
G155384 NA non-coding downstream 76011 16158651 ~ 16201112 (+)
G155393 NA non-coding downstream 133874 16216514 ~ 16241082 (+)
G155413 NA non-coding downstream 232126 16314766 ~ 16314974 (+)
G155602 NA non-coding downstream 570293 16652933 ~ 16653513 (+)
G155616 NA non-coding downstream 635536 16718176 ~ 16722663 (+)
LOC120574525 NA other upstream 187548 15887175 ~ 15891028 (+)
rasd2 NA other upstream 550106 15526854 ~ 15528470 (+)
arl16 arl16 other upstream 565766 15510093 ~ 15512810 (+)
ndel1b ndel1,LOC104940291 other upstream 673971 15366920 ~ 15404605 (+)
G155088 NA other upstream 938870 15135791 ~ 15139706 (+)
LOC120574544 pet100 other downstream 177044 16259684 ~ 16262058 (+)
camsap3 NA other downstream 233192 16315832 ~ 16387522 (+)
col5a3a col5a3,LOC104952480,LOC102201017,LOC101485068,LOC102299321,LOC100695815,LOC107378343,LOC108243746 other downstream 368593 16451233 ~ 16501704 (+)
olfm2a olfm2,LOC104918560,LOC107378344,LOC100706999 other downstream 438342 16520982 ~ 16563997 (+)
cmc4 NA other downstream 650816 16733456 ~ 16734344 (+)

Expression


Co-expression Network