cavin1a (ptrf)


Basic Information

Item Value
gene id cavin1a
gene name ptrf
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 19021022 ~ 19041459 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825013.1
CCGGGGGCGTGGGGCCGGTTGAAGAAGGGAAAACTTTGACTGGGTGGTTTCACAGGGAGCAGAGGCATTTGAGTCAGGGCACGCATGCCTCAGCTGTGAGAGGCCCTACTCCCCTTGGCTGGCTGGCATCCcagagcagaggcagagagacagagaaggctGAGAGTGTGAGACTGAGGGTAAAGAGAAAGTTTAAGCGTAAAGTAGACTAGGAAGTGGCAAACAAGTAGTCAAGAAAGTTGTcttaaagaaaagagaaaaggatTAGGGACTGAGTTTGGTGCAGTGTGGCTCCTGCAGGTTGTTTTTACAgtagtgtgtttgtatttgtagtGAGTGTGCAGGTGGTTTGTATTTGGAGTTGACAGCCATGGCTGATACAGATGTCAAGAAGGAGCACGCAGCCCTAGCAGAAGTGCcttttgatgatgatgaggtaGCTCTGGTGGGTGCTGCCACAGAGCCGGCAGTAGATGATGATGACCCTCTTGAGGGGGTGGACCTGGTGCTGGCAACTGGCCCTGGAGGCAAGAGTGAAGCGCAGATGAACGGGGTCATGGTCCTGTCTCTGCTCGACAAGATTATCGGGGTAGTAGACCAAATCCAGCAGACCCAGAATGGGCTCGAGGCCCGGCAGGAGGCCATGGAGAAGTCAGTGTCAACCATCCAAGGGGAGCTGGCTAAGTTGTCCAAGAACCACACCGGCACAGCCAACACTGTCAACAAAATGCTGGAAAAGGTACGCAAGGTCAGCGTCAACGTCAAGACGGTGCGGAGCAAcctggagaagcaggcaggccAGATCAAGAAGCTGGAGAGCAATGAGAGTGAGCTGCTCAAGAGACGCAACTTCAAAGTCCTCATCTACCAGGACAAAGTGAAGCCACCGAAGACATCCAAATCCAAGACAGCAGAGGCAGAAGTTGAAGGCATAGCCGTGGAGGGCCTTGAGCAGATACCTGAGGGACAAGAGGGAGTCCCAGTCAATCTCAACTCAGAtgaggaggtggagattgagGAGATTATCGAGGAGTCTCGTACCAAGCGCCTCCAACGCACCACCAAGCAGCAAGTGGACAACATAAAGAAAGCCTTCTCCAAAGAGAAAATGGAGAAGACCAAATTAAAGACAAAGGAGAACTTGGAGAAGACCAGGCAGAGAACCCGTGAAAACCTGGAGAAGACAAGGCAGAGAACCCGTGACAACCTGGAGAAAACCAAGCACAACCTGGAGAAGAAGATGGGCAAGCTCGGGACCCGCATGACCCCCAACATGGAGCGCAGGGCAAAGATGAAGACCTCCAAAGAGAAGGCGAAGAAGTCCCTCACTCCCGACCACACCATCTACGCTCGCTCCAAGACCACTGTGTACCGCGTCCCCCCCTTCACCTTCCATGTTAAGAAGTTCCGAGAAGGTGCGGAGGAGGTGGTGCAGAACACAGAGATGGTGGAGGTGACCGACGCCGAGGGCCAGTCAGCGGGCGAGGAGAACGGGCTGGGTGTGCACGTAGAGGTGGAGGAAGGGGAGCTGGTGCGTGTAGACAGCCCAGAGATGGAGGCTCTGTTGCAGGTGACTGAGGACTCTCAGCTAGTCAGGGTGGAGCCAGACCTCCTAAAGAAGGCCCAAAGCGAATAGAGTGTCTGCAGGTCTGTGAAATGAGAGATAAAGGGATGAAGAGGGGAGTGGAGTCTAATCACACGGACACAATATTAGTCGTGTATAGGGTCTCTCTTCACATGATCACAATCTATGACATCTCATTTGTTTTTGGTTCTCTTTTTATTGTACCCAACAGGGATGACTTTCATATTTGCTCCTCTTTAGCAtacaaataagaaaaacaaagcaaaaagaaaTTAAGCTTTTGAAACATGCTGCAGGCTGACTGGTTATTCTAGACTTGTATGTTTATGCTGTTTGCTGTTTATTGTTGGTTTGATAGATTGAGTGGctacaagaataaaaaaaaggtctaaATAGTCTTTGTTGTTGAGATGTAAtgtataatttaatatttgcCATGTATGATATGCACATTAGCAGGTATGTAACAGGAAGTTGTTGGCAGGATTTGTGCTTTAATCAATGGTTTTAGTGATGTAATGTGCACAagtgaaacaaaaaaagaaacaagtaGGCAAGGTATAGGTCTACAGAAGAAATAAAcaacaggaggagaggagacgagTGGGAATGGACTAAGAAAATCTCTTCCTAAACTAAAGAGTTTACACAAACTTTACTCCTGATATGCAAATTATTTAGCCTACTGCTAGTCACTCAGCCATTGTGCTAAATGTTACAATATAATCTAAATGACTGAAAATAGAAGCGTAATGTCTGATAGattattttgaacattaaaacactgacaaattcaaaaataacaggataacatttcactggaattgtaccttgtatgatttcatgtgacaaacaaaattgattgattgaatacTTAAACACTCACATAGCACCACAATAAACGGCTAAAGTTACTGTTGTGAACAATTATTTTAAGACCTATTGTTTTACCTTTTTGAGGACAAACCTGCaagttatatgttgtatgtacattttgtgtgcattgataacaaaaaaaaagacagagacaaaggaTCATGAAGCCTTAAAAGAATCAGTAGTCCACCACATTTGGTATATTTACAATACATGCTTGAAAACTTGCTTGACCataatttactgtaatattttgatGCATACTCACCATGCTACATTTGTTGCATCTGGACATGTTGAAGGGCCCACTCAACAACTTCCACATAGCACATATCTGCACAGAGGAGAAGACAAAGACTTTATCACCATGGTCACAGCTCACCAAAGTACAATTGCACAACCCTATTACATTTTCTCAAGGTAATTGCAGGCAGAAAAATGATGATCTGAAGAGCAAGACTGACTACGTAACATGTAGAGATGCAAATGTCATCCTAAATGCAGTCGCAGTGAGACAGCCATGGCCAAGTAGTTATGAATGGCATGGCACTTTAATAAATGTCAGAACATCATGATTtgatcaaaatgttttttttgcaatcTTGTGTACTTCCTCtgaattataaataaatcataatttagAGAAGATGATTGCAGAGGATTAGAGGAAGCTACGGTGATTGGATGGTAatttttgtagcctaaataaaCTGGGAATTCAATTGTTGCCACTTCTGATCATGAAGGCAAGCATTCAGACTCTGGACAAGGAGAGGGTGAATGtatggttttcatttttgtccCTGTAGACTGTGTGTGATTTTGATGTGGCTCACTGTGTAGTATGGAGAACCATTAAAATAATCAATGGGCTGGGGAATGCAATTAAGGAGAGTGCTCCCTCAGAGCACTGAGCAGGATGGAGAACAgtgaggacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgtgaagAGTAAGTATGTCCATACCATACAGGCTACCCACACTAATATCTTGGTGAAACTCCAGGTTTATGTCTACATCAAgagcaaatttaaaaaaacaaaggaaacaaTTGCAGGTCTGTGACATCACATAGACATATAACTATCATAGTCTTATATAGGCTAGTATATGAttatatctttttcttttttaaacaaaaacatcttcaatgttttgcacattaaacattaaagcattTGTAAGATATTGGCCCCCCACAAGTGTTTTTTTGCaaccatgtactgtatatttttgttttgttatagtTGGTTATTAAAAAAACTGAACCAGCATGCTATAAGCGTGAGGTATCATGCACAGCTTACAGCATATAGAGATATTGTCATTTAGAAAAATGCTGCAACACAATGTGACACATATTTGCTCTTGGTGTTATTGATTTATACTCAAATACTGaagtttgtcatttattttgtgtttaagGCCCCTTTTGTCActtcaatattaataaaagcttatggaataata

Function

symbol description
ptrf polymerase I and transcript release factor

NR:

description
PREDICTED: polymerase I and transcript release factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825013.1 True 4057 mRNA 0.43 2 19021022 19041459

Neighbor

gene id symbol gene type direction distance location
stk17al stk17a,LOC103368149,LOC104925927 coding upstream 33891 18974111 ~ 18987131 (+)
mylk5 LOC103368152 coding upstream 81147 18926753 ~ 18939875 (+)
fzd2 fzd2 coding upstream 100531 18918048 ~ 18920491 (+)
ccdc43 ccdc43,LOC103367900 coding upstream 116645 18899874 ~ 18904377 (+)
ramp2 NA coding upstream 284630 18731703 ~ 18736392 (+)
stat3 stat3 coding downstream 458 19041917 ~ 19057853 (+)
stat5a LOC103368144 coding downstream 19532 19060991 ~ 19120950 (+)
si:ch211-210g13.5 LOC104925988,LOC108243794,LOC107378441,LOC103359488 coding downstream 88158 19129617 ~ 19210538 (+)
hcrt NA coding downstream 169531 19210990 ~ 19213611 (+)
kcnh4a kcnh4,LOC104958099 coding downstream 173524 19214983 ~ 19235455 (+)
G156264 atp6v0a1a,atp6v0a1,LOC105890791 non-coding upstream 6380 19013549 ~ 19014642 (+)
G156253 hsd17b1 non-coding upstream 65878 18953675 ~ 18955144 (+)
G156248 NA non-coding upstream 76849 18943370 ~ 18944173 (+)
G156222 NA non-coding upstream 224767 18713207 ~ 18796255 (+)
G156155 mtdh non-coding upstream 399551 18621207 ~ 18621471 (+)
G156325 NA non-coding downstream 80200 19121659 ~ 19122079 (+)
G156327 NA non-coding downstream 80844 19122303 ~ 19123591 (+)
G156335 NA non-coding downstream 154266 19195725 ~ 19198278 (+)
G156354 NA non-coding downstream 220656 19262115 ~ 19262365 (+)
G156363 nkiras2 non-coding downstream 393771 19435230 ~ 19437880 (+)
LOC120574764 LOC103367899,LOC104923905,LOC104944057 other upstream 211472 18790907 ~ 18809550 (+)
G156225 LOC104944052 other upstream 296285 18723288 ~ 18724737 (+)
mlx mlx,LOC102777479 other upstream 404743 18605375 ~ 18616279 (+)
LOC120575352 bax other upstream 641234 18352411 ~ 18379788 (+)
ttyh3a ttyh3 other upstream 716931 18280790 ~ 18304091 (+)
G156613 rpl19,LOC103371192 other downstream 1080980 20122439 ~ 20125966 (+)
arhgap23a NA other downstream 1187992 20229451 ~ 20298352 (+)
G156781 NA other downstream 2052197 21093656 ~ 21100100 (+)
G156954 NA other downstream 2398203 21439662 ~ 21440264 (+)
limd2 limd2 other downstream 2483967 21525426 ~ 21538072 (+)

Expression


Co-expression Network