LOC120574877 (LOC103393031,LOC103469206,LOC105930142,LOC107092540,LOC104925717,LOC108239269,LOC106518725)


Basic Information

Item Value
gene id LOC120574877
gene name LOC103393031,LOC103469206,LOC105930142,LOC107092540,LOC104925717,LOC108239269,LOC106518725
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12864935 ~ 12872915 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825365.1
tgtgttttctcacGCCCCCTTCCACGTCGACCTGCACCCTCGCCATATTTCCAATTCTGTGAAGCCTGCAGCCCGATTTGCTGCTAAATTGCAGAGGAGAATATTTCCCACAAGATAGTAGTAGGTGTGAAACGATTTACATCCCCGTTAGcttcctggctagtgtctgttaATTCATTCTGCAACAATGAACGTCTTCAGACTGACAGGGGACCTTTCTCATCTGGCTGCTATCATCATCCTGCTACTCAAAATATGGAAAAGCAGGTCATGTGCAGGTATCTCTGGAAAGAGCCAAATCCTGTTTGCTGTGGTGTTCACCACTCGCTACTTGGATCTGCTCACCTCCTTTATCTCCCTCTATAACACAAGCATGAAGTTGATCTACATCGGCTGTGCGTACGCCACAGTCTACCTGATCTACGTGAAGTTCAGGGCAACCTACGATGGCAACCATGACAGTTTCAGAGTGGAGTTCCTGGTTGTTCCCGTTGGGGGTCTTGCTGTTCTCATCAACCACAACTTCTCTCTCATGGAGATCCTGTGGACATTCTCCATCTACCTAGAGTCGGTGGCAATCCTGCCTCAGCTCTTCATGATCAGCAAGACTGGCGAGGCAGAGACGATCACCACCCACTACCTGTTCTGCCTGGGCCTGTATCGGGCCCTCTATCTTCTCAACTGGATCTGGCGTTATTACTTTGAAGGCTTCTTAGACATGATCGCCATCTTTGCCGGATTGGTCCAGACTGTCCTCTACTGTGACTTCTTCTACCTTTATGTCACCAAAGTGTTGAAAGGCAAGAAGCTGAGCCTTCCGGCGTAAAACCTACAGAAGGAGATGGAGACTCCCAGCAGACTCAGGGTGGTGGGGGAGATCACATGATGTAATCTCGTGACCTACAGCAAAAGATGCCTGAGGCAGAGAGCCAACTATCTGGGGGGGGGGAACACTAGTCTTCTTGATGATTGCTGATGGACAACTGGTAAATGCCAACAAACACCAGAGCTGAACAAAAATCATACTAGGTCAACCTTTGGATTTCTGTGTTCAGCATCTTGCCTTAAACTTCTTTTCATTGCTGTTCAAATAAGCGAAaaggctttttttgtttttctacatGTGAGGCGTATAcgcttgtttttttattttttttataatgtcaCAAATAGGGTCGACTCCGAGAAGTACCTTGTTTGACTTGGTAATGAATACACAATGTACAGTCTTGAGTGAGACTAAAGAGGTAATGTATCTGAGTGCCTGATGAGGATTACGTCCACTTTggcacagtttttctttttttacttttggatTTTCCTTTTGtctgcatatactgtaatacatGTACCTTCTCATGGAAATATTCAAAGATGCCAACAGCAACACTTTCACTCCAACGCACATGcattttgtaaaacattttaactttTCTTCTATAAATCTGACAATTTTGTAAGCAGAACTCATGAGAGGATTTTTAGTTTCAACTTAGGTTTAAGATGTAACCCATGAAATAAATTGAATTCCAGCAATCTTTTGGACATAGATGTCAGCATTTTCAAATGGTGGCTATCTCATTTATAATTAAACCTTTTCATGTGTTAATTGAATTTCTTTTCCTTCAGCTTActgtattgaagaagaaaaaaatacataaattgttctacagctttaaaatggatTTCACACAATCTTTTAACAATGTTACATCACATTTGGGATGTAGATGGAGCACAAACTTTGTTTCTGCCAGCATTGCACCCCAATAACAAACTCATGAACACCTTCAAACAGTGACTTGTCGGTTATCTCAAGGTAGAAATCTATGAAGTCAAGAGTAAAGCAATAAGGAATGACTGAATAGGGATATTTGGCATGAGATCCTATAGCACTTTGACTAGTTGTGACATTTCAATTGTTAACCGTATAGCTGGAGTGTGAACAGTTAAACAGATTTCACATGGTGCTGATCGATTATTGAGTAGAGGTGATCAAGTTGTTCAATGGGTGAATTTTATTAAATTTACAGGCCTCTTGTTAACTTTTGaatttttgttttcaaagtaGTCATTCCTAAAGGATTATTTcaactttttgtctttttgtgcaTGATAACGCCTCCATTAAAGATTTTATTAGAATCACA

Function

NR:

description
PREDICTED: ER lumen protein-retaining receptor 2-like

GO:

id name namespace
GO:0006621 protein retention in ER lumen biological_process
GO:0015031 protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046923 ER retention sequence binding molecular_function

KEGG:

id description
K10949 KDELR; ER lumen protein retaining receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825365.1 True 2150 mRNA 0.41 5 12864935 12872915

Neighbor

gene id symbol gene type direction distance location
mfsd13al LOC104947686,LOC100692111,LOC102297699,LOC101482249 coding upstream 5777 12854029 ~ 12859158 (+)
sdr42e2 LOC103360721,LOC100712049 coding upstream 23590 12817115 ~ 12841345 (+)
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding upstream 57039 12782750 ~ 12807896 (+)
LOC120574126 LOC101483500,LOC100695608,LOC102213391,LOC102786175 coding upstream 83490 12774893 ~ 12781445 (+)
si:ch211-256e16.3 LOC104947690,LOC100695876,LOC102213849,LOC101483797,LOC103360703 coding upstream 90795 12766625 ~ 12774140 (+)
proza NA coding downstream 50455 12923370 ~ 12931320 (+)
gprc5ba gprc5b,LOC103360712 coding downstream 65769 12938684 ~ 12952238 (+)
LOC120575071 dnaaf5,LOC102780779 coding downstream 550630 13423545 ~ 13448411 (+)
LOC120574400 gde1 coding downstream 575712 13448627 ~ 13454217 (+)
LOC120574401 NA coding downstream 581577 13454492 ~ 13460827 (+)
G154447 NA non-coding upstream 37358 12782774 ~ 12827577 (+)
G154410 NA non-coding upstream 130023 12734683 ~ 12734912 (+)
G154385 NA non-coding upstream 296083 12566974 ~ 12568852 (+)
G154379 NA non-coding upstream 341263 12475767 ~ 12523672 (+)
G154367 NA non-coding upstream 462952 12401730 ~ 12401983 (+)
LOC120574706 NA non-coding downstream 16504 12889419 ~ 12904818 (+)
G154494 LOC100710707 non-coding downstream 107338 12980253 ~ 12981635 (+)
LOC120574709 NA non-coding downstream 118988 12991903 ~ 12995560 (+)
G154535 NA non-coding downstream 155217 13028132 ~ 13034382 (+)
G154555 NA non-coding downstream 244479 13117394 ~ 13117721 (+)
G154461 NA other upstream 18338 12843423 ~ 12846597 (+)
G154254 NA other upstream 749743 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other upstream 771377 12089373 ~ 12093558 (+)
LOC120574068 NA other upstream 1639686 11207041 ~ 11225249 (+)
LOC120574482 znf207,LOC108444040,LOC108278632 other upstream 1791109 11063859 ~ 11073826 (+)
LOC120574968 LOC102294452 other downstream 144044 13016959 ~ 13026416 (+)
vasnb vasn other downstream 783100 13656015 ~ 13692303 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other downstream 896104 13769019 ~ 13781685 (+)
trnat-agu_6 NA other downstream 896788 13769703 ~ 13769776 (+)
G154743 LOC102293104 other downstream 974224 13847139 ~ 13854286 (+)

Expression


Co-expression Network