LOC120575071 (dnaaf5,LOC102780779)


Basic Information

Item Value
gene id LOC120575071
gene name dnaaf5,LOC102780779
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13423545 ~ 13448411 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825669.1
ATGGCAGCGATGGCGGCTGGAGACGAGCATGCTGTCTCTGAAGTTTTAAGAGGACTCGCTCGACATTTAAACTGTCTAAACGAAGACAACAAGGCGACAAGAAAGAGGGCTCTTGAGCTAATCAAGAGAGAGACTGTAGATAAAGGACTTTCCAGCAGCGTTTTACAGGAGgttttctctgtcctcctcaAGCCTCTCCTCAAATGTCTGTCAGACCCGATGGAAAGATGCAGAGAAACCGCGATCACGATGATAACAGAGTTTATTCGCTGTGTCCCCAAACCGGAGGAGTCGCTGCTCTATCTCATGCCATGTCTGGCTCAGAGGCTCGGGGAGAAAGAGATCCTGGAGCCGGCGGAGGAGCTTCGACTGTCGGCCGTGGAGATGTTGACTCTGACGGTGGAGGTGTGCGGGAAGCATTTAGCGCCGTATCTGACCGAAATGATCAAAATACTGCAGAGAACTATCGTCGACCCTTTCCCAGATGTCCGAAGAGAAAGCTGCAAATGCACCGTAAACTTTGCAAAGTGTATGCCAGAGCACTTCCACCTGCAGGCTGAGAGTCTGGTCAAGCCTCTCATGCAGACTATTTCTCATCAACACTCCCGGGTACGAGTGTCTGTCATCGAAGCCACCGGGGCTGTCATTCAGCATGGCACTGGGAAAAACGTGGATGACGTGCTCTCTCACCTGGCACAGAGACTGTTTGACGACTCACCACAGGTGAGAAAAGCTGTGACTGCAGTCGTTGGTGATTGGCTACTTCACATGAGAGACAGATACTCTTATTTCCACAAACTCATCCCGCTGCTGCTGAGCGGTATCACTGACGAGATCTCAGAAATAAGGCTTCTAGCAGCTGATTTATGGAAGCAGGTAGGCGCTCAGTGGGAGAAGGAGAATGAGGACGAAATCAAGGACAAGATGGACTTTCTCCTCACCCCACCTCCCTTCTACCCACCAGGAGTGGAGCGTCCAGGGCTGGGCTGCAGAGAGCTTGTGGTGAGAAACCTGGGTAGGCTGGTGCCGGCCATTACCCACGACCTAACCGACTGGCTGGTGCCCACACGGGTCAGGACCTCTCAGCTGCTCTCCGTGCTGCTGCTCCACGCTGAGGACCACAGCACCCAGCATCTGCAGCCTCTCCTGGCCACCCTCCGACAGGCCTGCACCGACACGGAGCGGGACGTGGTCAGCAATTGCCTGGCAGCTGCTAAACTGTTGGGGACCTTTgtccctcctgttgtcttcctCAAGCTGCTGCTGGATCATGTGAGAACCCCCTCCTTTTCCTCTCACCCGTGGGCCCCCCTCATGGTGCTGACTGCAGTGCTGGGAGGGTGCTCCAAAGCCCTCCTAAAACCACATCTCGAACAGATCGCCAACACACTGACCCAGCCCGACGTCTGTCAGGAATATCAACAGGTTGTGTACTTGGAGCAGTTGTTGGCCTGTGTGGATGTGCTGCTGCGTCAGTGTGAGTCAGACCACAGCTCAGTCagcctgcagctgctgcaggtGCTGGTCACTGTCCAGAGCCTCTCCACCGAGCCACATCTCAGCGAAAAGGCCTTGGAGAGTGTACAATTCTTGTGTAAGGTGCAGGGCCTGGATTCAGTGATGGAGCTCTATAGACAACATATGGGCCAGCTGCTGGACTGGCTGTCTGCCTCTGTCAACACCTGGTCCAGTTACTCCCCACAGAGACTTCAACTGCATATCATAGTCATACAATCAGgtCCAGTGATTGGGGAGTTTGTGAGCCAGTTGATGCCTCTGCTGTGCAGCTGCCTTCAATCGGACAGAGACCTAGAGATGAGGATGAGCATCTTCACAATGCTTGCTAAGTTGCTACTGGATGCATCCAACACACTGGATTCCAAAGGGCATTTCCGTGATGAGTCAGAGACGTTCCTGTGTGAAGTCTTGCTTCCTAACCTGGTGTGGCGCGCAGGCCGTACTGCTGCTGCCGTCCGCACCTCAGCCCTCAGCTGTCTGCTGGCCCTGCTGCATGGAGGGTCCATTACACCTGGACAGCTGctgtgtttggaggagaaactGAGTCCCCAGGTGTTGTCAGCCCTGGAAGAGGACTCTCAGATGAGCAGACTGCTGGCTTGTCGTTCTCTGTCCGCCATACTCCGACTCATAGGAACCAGTCTGCACCCTGAGGCCCTTAACAAGATCTACCCCGtgctgctgaAGCGTTTGGACGACAGCAGTGAGGAGGTGCGCAGCGTCGCCCTGCAGGCCCTCGGCCTGTGGCTGTCCAGTCTGACCAAAGACTATAACCCTGAGTTCTTTGCTCCTcatctgcagctcctcttccaGCAGCTCCTGCTGCACCTGGATGACCCCGACAGCTCGGTGCAGGACCAAGTTCTCGAGATCCTGAAGAAAGGCAGCTCGGTCCACCCGGGACTTCTGAAGAGGGAGGTGGAGGCAGTGCGAAACAAACAGCGGAGTCCTCTCTACTGCGACCAGCTGCTCCAGCACATCAGGTCAATTCCCACAGAGACCACAGCAGCATCTGAGTGACATGATCGTATAATAAGACGATGGCGCATTTTTCACTTAAGGACTTGTTCCCCTTAAAATGAAACTCAGTAATTAAGTAGCTACTTGCCTTAAATGCAGCATTTTGACCCTCGTGGGTAAGTAGATGACTGATTTCTTTCAAGTTGTAGGTAACCTTTTGAAAATGCtttctttatatataaatatatataaaaatttcAAATGACATAAATCTTGTACGTTTAAATGTGTGaccatcattatttttttaaacaaacatacatgttGAACAACgtagaaaagaaagaaggaacaAAAGAGAAGATGCCTGAAAATGCCTTTTAATGCAGAATGTCTCCTTCACCATTTGTCACAACAGTTGCATGTATTCCTGTTATTGTTATCCTTTGGTTCCTTTTGTTTTAATGGGAATGTTTACGATGCACTGTggttgtgtttaaatgtgtttagtGATACACTCAATACAAATTCTTTGAGCATTCCTGCCTGCACCCAAACTCCCAGCACCCCTCTGCCTCCAGATGTTGCGGAGTCTGAGATAAGATAGGTCATGTGATTGttgtcttcaaaataaaagtattgggggttttttgtttaaaaaaaaaaaaaaaagaacttaaatattgagatgtgtttaaataaat
>XM_039825670.1
GTGCTGCATGTTGTCATAACGACAGTCAAGATGGCAGCGATGGCGGCTGGAGACGAGCATGCTGTCTCTGAAGTTTTAAGAGGACTCGCTCGACATTTAAACTGTCTAAACGAAGACAACAAGGCGACAAGAAAGAGGGCTCTTGAGCTAATCAAGAGAGAGACTGTAGATAAAGGACTTTCCAGCAGCGTTTTACAGGAGgttttctctgtcctcctcaAGCCTCTCCTCAAATGTCTGTCAGACCCGATGGAAAGATGCAGAGAAACCGCGATCACGATGATAACAGAGTTTATTCGCTGTGTCCCCAAACCGGAGGAGTCGCTGCTCTATCTCATGCCATGTCTGGCTCAGAGGCTCGGGGAGAAAGAGATCCTGGAGCCGGCGGAGGAGCTTCGACTGTCGGCCGTGGAGATGTTGACTCTGACGGTGGAGGTGTGCGGGAAGCATTTAGCGCCGTATCTGACCGAAATGATCAAAATACTGCAGAGAACTATCGTCGACCCTTTCCCAGATGTCCGAAGAGAAAGCTGCAAATGCACCGTAAACTTTGCAAAGTGTATGCCAGAGCACTTCCACCTGCAGGCTGAGAGTCTGGTCAAGCCTCTCATGCAGACTATTTCTCATCAACACTCCCGGGTACGAGTGTCTGTCATCGAAGCCACCGGGGCTGTCATTCAGCATGGCACTGGGAAAAACGTGGATGACGTGCTCTCTCACCTGGCACAGAGACTGTTTGACGACTCACCACAGGTGAGAAAAGCTGTGACTGCAGTCGTTGGTGATTGGCTACTTCACATGAGAGACAGATACTCTTATTTCCACAAACTCATCCCGCTGCTGCTGAGCGGTATCACTGACGAGATCTCAGAAATAAGGCTTCTAGCAGCTGATTTATGGAAGCAGGTAGGCGCTCAGTGGGAGAAGGAGAATGAGGACGAAATCAAGGACAAGATGGACTTTCTCCTCACCCCACCTCCCTTCTACCCACCAGGAGTGGAGCGTCCAGGGCTGGGCTGCAGAGAGCTTGTGGTGAGAAACCTGGGTAGGCTGGTGCCGGCCATTACCCACGACCTAACCGACTGGCTGGTGCCCACACGGGTCAGGACCTCTCAGCTGCTCTCCGTGCTGCTGCTCCACGCTGAGGACCACAGCACCCAGCATCTGCAGCCTCTCCTGGCCACCCTCCGACAGGCCTGCACCGACACGGAGCGGGACGTGGTCAGCAATCTGCTGCTGGATCATGTGAGAACCCCCTCCTTTTCCTCTCACCCGTGGGCCCCCCTCATGGTGCTGACTGCAGTGCTGGGAGGGTGCTCCAAAGCCCTCCTAAAACCACATCTCGAACAGATCGCCAACACACTGACCCAGCCCGACGTCTGTCAGGAATATCAACAGGTTGTGTACTTGGAGCAGTTGTTGGCCTGTGTGGATGTGCTGCTGCGTCAGTGTGAGTCAGACCACAGCTCAGTCagcctgcagctgctgcaggtGCTGGTCACTGTCCAGAGCCTCTCCACCGAGCCACATCTCAGCGAAAAGGCCTTGGAGAGTGTACAATTCTTGTGTAAGGTGCAGGGCCTGGATTCAGTGATGGAGCTCTATAGACAACATATGGGCCAGCTGCTGGACTGGCTGTCTGCCTCTGTCAACACCTGGTCCAGTTACTCCCCACAGAGACTTCAACTGCATATCATAGTCATACAATCAGgtCCAGTGATTGGGGAGTTTGTGAGCCAGTTGATGCCTCTGCTGTGCAGCTGCCTTCAATCGGACAGAGACCTAGAGATGAGGATGAGCATCTTCACAATGCTTGCTAAGTTGCTACTGGATGCATCCAACACACTGGATTCCAAAGGGCATTTCCGTGATGAGTCAGAGACGTTCCTGTGTGAAGTCTTGCTTCCTAACCTGGTGTGGCGCGCAGGCCGTACTGCTGCTGCCGTCCGCACCTCAGCCCTCAGCTGTCTGCTGGCCCTGCTGCATGGAGGGTCCATTACACCTGGACAGCTGctgtgtttggaggagaaactGAGTCCCCAGGTGTTGTCAGCCCTGGAAGAGGACTCTCAGATGAGCAGACTGCTGGCTTGTCGTTCTCTGTCCGCCATACTCCGACTCATAGGAACCAGTCTGCACCCTGAGGCCCTTAACAAGATCTACCCCGtgctgctgaAGCGTTTGGACGACAGCAGTGAGGAGGTGCGCAGCGTCGCCCTGCAGGCCCTCGGCCTGTGGCTGTCCAGTCTGACCAAAGACTATAACCCTGAGTTCTTTGCTCCTcatctgcagctcctcttccaGCAGCTCCTGCTGCACCTGGATGACCCCGACAGCTCGGTGCAGGACCAAGTTCTCGAGATCCTGAAGAAAGGCAGCTCGGTCCACCCGGGACTTCTGAAGAGGGAGGTGGAGGCAGTGCGAAACAAACAGCGGAGTCCTCTCTACTGCGACCAGCTGCTCCAGCACATCAGGTCAATTCCCACAGAGACCACAGCAGCATCTGAGTGACATGATCGTATAATAAGACGATGGCGCATTTTTCACTTAAGGACTTGTTCCCCTTAAAATGAAACTCAGTAATTAAGTAGCTACTTGCCTTAAATGCAGCATTTTGACCCTCGTGGGTAAGTAGATGACTGATTTCTTTCAAGTTGTAGGTAACCTTTTGAAAATGCtttctttatatataaatatatataaaaatttcAAATGACATAAATCTTGTACGTTTAAATGTGTGaccatcattatttttttaaacaaacatacatgttGAACAACgtagaaaagaaagaaggaacaAAAGAGAAGATGCCTGAAAATGCCTTTTAATGCAGAATGTCTCCTTCACCATTTGTCACAACAGTTGCATGTATTCCTGTTATTGTTATCCTTTGGTTCCTTTTGTTTTAATGGGAATGTTTACGATGCACTGTggttgtgtttaaatgtgtttagtGATACACTCAATACAAATTCTTTGAGCATTCCTGCCTGCACCCAAACTCCCAGCACCCCTCTGCCTCCAGATGTTGCGGAGTCTGAGATAAGATAGGTCATGTGATTGttgtcttcaaaataaaagtattgggggttttttgtttaaaaaaaaaaaaaaaagaacttaaatattgagatgtgtttaaataaat

Function

symbol description
dnaaf5 Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 18. Orthologous to human DNAAF5 (dynein axonemal assembly factor 5).

NR:

description
PREDICTED: HEAT repeat-containing protein 2

GO: NA

KEGG:

id description
K19759 DNAAF5; dynein assembly factor 5, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825669.1 True 3182 mRNA 0.51 13 13423575 13448411
XM_039825670.1 False 3155 mRNA 0.50 13 13423545 13448411

Neighbor

gene id symbol gene type direction distance location
gprc5ba gprc5b,LOC103360712 coding upstream 471307 12938684 ~ 12952238 (+)
proza NA coding upstream 492225 12923370 ~ 12931320 (+)
LOC120574877 LOC103393031,LOC103469206,LOC105930142,LOC107092540,LOC104925717,LOC108239269,LOC106518725 coding upstream 550630 12864935 ~ 12872915 (+)
mfsd13al LOC104947686,LOC100692111,LOC102297699,LOC101482249 coding upstream 564387 12854029 ~ 12859158 (+)
sdr42e2 LOC103360721,LOC100712049 coding upstream 582200 12817115 ~ 12841345 (+)
LOC120574400 gde1 coding downstream 216 13448627 ~ 13454217 (+)
LOC120574401 NA coding downstream 6081 13454492 ~ 13460827 (+)
glis2b glis2,LOC102778126 coding downstream 154417 13602828 ~ 13631755 (+)
dnaja3a dnaja3,LOC102777832 coding downstream 300509 13748920 ~ 13754367 (+)
ccnf ccnf coding downstream 336425 13784836 ~ 13795684 (+)
G154603 NA non-coding upstream 17851 13356223 ~ 13405694 (+)
G154602 NA non-coding upstream 154255 13268919 ~ 13269290 (+)
G154586 NA non-coding upstream 189224 13234113 ~ 13234321 (+)
G154555 NA non-coding upstream 305824 13117394 ~ 13117721 (+)
G154535 NA non-coding upstream 389163 13028132 ~ 13034382 (+)
G154634 crebbp,LOC108247643,LOC106518707 non-coding downstream 25748 13474159 ~ 13475448 (+)
G154639 NA non-coding downstream 35628 13484039 ~ 13484718 (+)
G154661 LOC106942609 non-coding downstream 44174 13492585 ~ 13493861 (+)
G154682 NA non-coding downstream 141106 13589517 ~ 13592634 (+)
LOC120575454 NA non-coding downstream 498195 13946606 ~ 13954723 (+)
LOC120574968 LOC102294452 other upstream 397129 13016959 ~ 13026416 (+)
G154461 NA other upstream 576948 12843423 ~ 12846597 (+)
G154254 NA other upstream 1308353 12085861 ~ 12115192 (+)
LOC120574726 msrb1,LOC101472161,LOC105933050,LOC102798832 other upstream 1329987 12089373 ~ 12093558 (+)
LOC120574068 NA other upstream 2198296 11207041 ~ 11225249 (+)
vasnb vasn other downstream 207604 13656015 ~ 13692303 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other downstream 320608 13769019 ~ 13781685 (+)
trnat-agu_6 NA other downstream 321292 13769703 ~ 13769776 (+)
G154743 LOC102293104 other downstream 398728 13847139 ~ 13854286 (+)
si:dkey-282h22.5 NA other downstream 1532825 14981236 ~ 14984745 (+)

Expression


Co-expression Network