LOC120575450 (rnps1,LOC104933647,LOC103363435)


Basic Information

Item Value
gene id LOC120575450
gene name rnps1,LOC104933647,LOC103363435
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13863511 ~ 13866556 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826247.1
CAGGTGGACACGTAACTTCCGCTATCCCGTCATCACCGAGCGACGTTTTCTCAGGCCGCAAGTGGTTGAAGCAAAATCACCTCGTTTGAAAAATATGGCACCATCACCCACAAAGcggaaggaggaggaaaaaacTAAAGACAGAGGCAAAGAAAAGACTAGTACAAAggaaggagacaaggagagaggacGGGAGAAAGCAAGGAAACGTCGCAGTGCCTCtactggcagcagcagcagcagGTCCAGATCTAGCTCTACTTCAAGCAGCAGCTCTGGTTCCAGCTCAGGTTCCTCAAGTGGATCCAGCTCATCCGGCTCCAGCCACTCTGGTTCGTCAAGCTCtcgttcctcctcctcttccagctCCTCAGGCTCCCCCAGCCCCAGCCGTAGACGCCATGACAACCGCCGCCGCTCCCGCTCAGCGTCCAAAACACAGAAGAGGGGAGATGATAAGGAGCGAAGGAAAAGAAGCCCGAGCCCCAAACCAACTAAAGTTCACTTAGGGCGGCTGACCAGGAATGTCACCAAGGACCACATCCAGGAGATCTTTTCCACATATGGAAAAATCAAAATGGTCGAAATGCCAATGGACAGGGTCCACCCACACCTGTCCAGGGGCTATGCTTATGTGGAGTTTGAGACTCCTGAGGAGGCCCAGAAGGCCCTCAAACACATGGATGGAGGTCAGATTGATGGACAAGAAATCGCTGCATCTGCCGTGCTGACTCAACGAATCCGCCCTCCACCTCGTAGACCTTCTCCCCCTCGCAGAATGCCCCCACCACCCCCTATGTGGCGTCGCAGTCCACCACGCATGAGGAGAAGGTCCCGCTCCCCGAGGAGGCGGTCCCCAGTGCGCCGCCGCTCTCGCTCCAGATCTCCTGGTCGCAGGCGTCACCGCTCTCGTTCCAGCTCTAACTCGTCCAGATAGACAAGTTTTCTGCCTTCTGATACCAAGTGATCTCTTAGATTCTCTGACACCAGACCAGCTGGAGTTCCTGCTTTCCCAGACCTCATTGACTCAccagaaataaaataatttgcaTTGTAGCCAATACAAACATCTGCCTGCGTGTAGAAAgcggaaatgtgtttttttttttttttttttttttgtgcaaatgtGAGTTTTTCATATTTTGTGTTAGGTTGATCCTGAAAAGCTGTTTCAAGCTGAGTTTGGGCTTCAGTGAGATCGataaatatttcttttaaagtgcgatttctttttaccatGTACTgaatttttagacatttttttgaaaataaaaatgctgaAACACG

Function

symbol description
rnps1 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human RNPS1 (RNA binding protein with serine rich domain 1).

NR:

description
PREDICTED: RNA-binding protein with serine-rich domain 1-like

GO: NA

KEGG:

id description
K14325 RNPS1; RNA-binding protein with serine-rich domain 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826247.1 True 1290 mRNA 0.50 7 13863511 13866556

Neighbor

gene id symbol gene type direction distance location
LOC120575448 NA coding upstream 16603 13840149 ~ 13846908 (+)
LOC120575447 LOC107083151 coding upstream 25420 13832571 ~ 13838091 (+)
abca3b NA coding upstream 35720 13796728 ~ 13827791 (+)
ccnf ccnf coding upstream 67827 13784836 ~ 13795684 (+)
dnaja3a dnaja3,LOC102777832 coding upstream 109144 13748920 ~ 13754367 (+)
LOC120575449 adap1,LOC103363436,LOC106518683,LOC108241370 coding downstream 728 13867284 ~ 13884326 (+)
LOC120575215 sox8 coding downstream 130346 13996902 ~ 14000676 (+)
LOC120574849 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding downstream 181530 14048086 ~ 14049437 (+)
LOC120574871 rasd1,LOC101484812,LOC104918344,LOC106942351,LOC103468867,LOC103373502,LOC103140985,LOC103393006 coding downstream 187996 14054552 ~ 14055843 (+)
LOC120574464 LOC104918338,LOC103373486,LOC103393004,LOC106518679,LOC108241369,LOC103140983 coding downstream 200230 14066786 ~ 14096876 (+)
G154682 NA non-coding upstream 270877 13589517 ~ 13592634 (+)
G154661 LOC106942609 non-coding upstream 369650 13492585 ~ 13493861 (+)
G154639 NA non-coding upstream 378793 13484039 ~ 13484718 (+)
G154634 crebbp,LOC108247643,LOC106518707 non-coding upstream 388063 13474159 ~ 13475448 (+)
G154603 NA non-coding upstream 457817 13356223 ~ 13405694 (+)
LOC120575454 NA non-coding downstream 80050 13946606 ~ 13954723 (+)
G154777 NA non-coding downstream 183275 14049831 ~ 14056966 (+)
LOC120575155 NA non-coding downstream 241225 14107781 ~ 14241105 (+)
G154811 NA non-coding downstream 418618 14285174 ~ 14287984 (+)
G154824 NA non-coding downstream 459726 14326282 ~ 14326489 (+)
G154743 LOC102293104 other upstream 9225 13847139 ~ 13854286 (+)
LOC120573994 LOC103358698,LOC105416448,LOC106518660,LOC108275040,LOC108431896,LOC107695676 other upstream 81826 13769019 ~ 13781685 (+)
trnat-agu_6 NA other upstream 93735 13769703 ~ 13769776 (+)
vasnb vasn other upstream 171208 13656015 ~ 13692303 (+)
LOC120574968 LOC102294452 other upstream 837095 13016959 ~ 13026416 (+)
si:dkey-282h22.5 NA other downstream 1114680 14981236 ~ 14984745 (+)
LOC120574428 NA other downstream 1119144 14985700 ~ 14986913 (+)
LOC120575440 LOC102304323 other downstream 1125457 14992013 ~ 14992508 (+)
G155088 NA other downstream 1269235 15135791 ~ 15139706 (+)
ndel1b ndel1,LOC104940291 other downstream 1500364 15366920 ~ 15404605 (+)

Expression


Co-expression Network