atp5pd (atp5h,LOC103361245,LOC101487002)


Basic Information

Item Value
gene id atp5pd
gene name atp5h,LOC103361245,LOC101487002
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15428818 ~ 15433287 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826277.1
TTAAATGAACCTTAGCTCATCGTACATTTCCGTTTCCTGTCGGCAGTCAGTTTGGAGGAGTTCGTTCCATCGACGTTAACACGCAGTGAAACATGGCTGGGAGACGAGTTGCACTGAAGACCATTGACTGGGTGGCTTTTGCAGAGAGGGTCCCGCCCAACCAGAGGACCATGTTTAATAACCTGAAGACACGGAGTGATGCTGTTGCTGCAAAGCTCACCTCTCTGCCAGAGAAACCCGCTGCAATCGACTGGAGCTACTACAGATCTGCTGTGGTTAAAGCAGGCATGGTGGATGAGTTTGAAAAGAAGTTCAGCAGCCTGAAGGTTCCTGAGCCTGTAGATACTCAGACAGCTCTTATCAATGCACAGGAGGCAGAAGCGAACACAACGGCTGCTGCCTACATCGAAGCATCCAAAGGTCGTATTGCCCAGTATGAGAAAGAGCTGGACAAATTCCGGAACATGATTCCCTTCGACCAGATGACCATCGAAGACCTGAACGACACTTTCCCAGAAACCAAGCTGGACAAAGAGAAACATCCTTACTGGCCACACAAACCCATTGCTGAACTGTAAACGTATCTACTCTGACCATATTCTATATATAATGTATCTTCCACTGAGGAAGacctgtacagtatgtgtattaaATTCTTGTTTCATCCATTCAGGAGTGTAGTAAA

Function

symbol description
atp5h Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ion transport. Located in mitochondrion. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Orthologous to human ATP5PD (ATP synthase peripheral stalk subunit d).

NR:

description
PREDICTED: ATP synthase subunit d, mitochondrial

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02138 ATPeF0D, ATP5H, ATP7; F-type H+-transporting ATPase subunit d

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826277.1 True 685 mRNA 0.47 6 15428818 15433287

Neighbor

gene id symbol gene type direction distance location
arhgap44a LOC103361248 coding upstream 38288 15360766 ~ 15390530 (+)
LOC120575445 LOC104940295,LOC103361241,LOC104959451 coding upstream 115247 15310845 ~ 15313571 (+)
cdc42ep4a LOC104940296,LOC100697350,LOC103361240,LOC102780692 coding upstream 134847 15280641 ~ 15293971 (+)
sdk2a LOC103361238 coding upstream 151858 15191858 ~ 15276960 (+)
aatka LOC103361234 coding upstream 385122 15012793 ~ 15043696 (+)
znf750 NA coding downstream 62400 15495687 ~ 15499506 (+)
LOC120575067 NA coding downstream 102405 15535692 ~ 15537840 (+)
btr02 LOC104960320,LOC103356290,LOC100690538,LOC106529769 coding downstream 104334 15537621 ~ 15541106 (+)
cldnk LOC106925874,LOC103468796,LOC106529779,LOC106946608 coding downstream 109660 15542947 ~ 15543867 (+)
hgs hgs coding downstream 112529 15545816 ~ 15557017 (+)
G155104 NA non-coding upstream 255455 15173092 ~ 15173363 (+)
G155077 NA non-coding upstream 313370 15055351 ~ 15115448 (+)
G155050 NA non-coding upstream 425172 15001008 ~ 15003646 (+)
G155041 NA non-coding upstream 457028 14971522 ~ 14971790 (+)
G155040 NA non-coding upstream 457350 14971252 ~ 14971468 (+)
G155180 metrnl non-coding downstream 13597 15446884 ~ 15449558 (+)
G155197 LOC104918611,LOC104960327,LOC102777936,LOC100691075,LOC101487576 non-coding downstream 73766 15507053 ~ 15508319 (+)
G155212 NA non-coding downstream 110955 15544242 ~ 15544549 (+)
G155257 NA non-coding downstream 228081 15661368 ~ 15731815 (+)
G155346 NA non-coding downstream 457808 15891095 ~ 15892034 (+)
ndel1b ndel1,LOC104940291 other upstream 24213 15366920 ~ 15404605 (+)
G155088 NA other upstream 289112 15135791 ~ 15139706 (+)
LOC120575440 LOC102304323 other upstream 436310 14992013 ~ 14992508 (+)
LOC120574428 NA other upstream 441905 14985700 ~ 14986913 (+)
si:dkey-282h22.5 NA other upstream 444073 14981236 ~ 14984745 (+)
arl16 arl16 other downstream 76806 15510093 ~ 15512810 (+)
rasd2 NA other downstream 93567 15526854 ~ 15528470 (+)
LOC120574525 NA other downstream 453888 15887175 ~ 15891028 (+)
LOC120574544 pet100 other downstream 826397 16259684 ~ 16262058 (+)
camsap3 NA other downstream 882545 16315832 ~ 16387522 (+)

Expression


Co-expression Network