G169095 (ubb,ubc,LOC107553588)


Basic Information

Item Value
gene id G169095
gene name ubb,ubc,LOC107553588
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27291945 ~ 27297777 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU229276
AATCTCTCATCTTTTATTCTGTTAGGTTGTCATGTAAATAAATTGGACAATTTATTGACCGCCCCTCAGACGCAGGACAAGATGGAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGGAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATGTTTGCACCTCTGTAAAATGGAGATGAATCAACTCACGATTTAGCGTCAAatcaaaaaagttttaaaaaattgCTTTAATCGGACTAAATTAATGTCATTATAATTTGATATTATCTGGATCCCAAAGAACTGTAAAAAAGTAGCGCTGTAATTACATGTACATTACGTTAGTTAATCTCTAAAACTGATACTTAAACAGAACATTAATATGAAGCTCTGAACTATCGGCAGCTCAGCAGCCATTCCGATCCGAGCGCCATTTTGAGATCCTATTGACCTTCTTTGTTCAGCTGTAACTCTAATGGACGATAACGTTACTGGAAATGTTGAGTCATTGCTATCGTTATCATTTGTTAGCGTAGCTAAGCCAAATAGAAATCGACGACAAAGTGATTGACGCTAAAACTCGTAGCAACCTGTATACATTGAGTAATGTAGCTTAACTGCTTGATTGTACTTTAAGAACGTCAATTTGAGGCATAGTTACCGTCTGCTACAATTCTCTTATGCGACTGTAACGTTAGGAAGGTTAAAACCATGTCACTGGTCATCAAACAAGCAACTAAAAACATTAACTGTATACACAATTCACATTTTAGAATACTATAGCtcgaaaaaaagagaaatgtgtACTCACTTTTAAGATACGCAGTTAAATATGTTATATTGTGCTGGTACAGCGATTCTTCTTTCGGCTTCC
>TU229286
AATCTCTCATCTTTTATTCTGTTAGGTTGTCATGTAAATAAATTGGACAATTTATTGACCGCCCCTCAGACGCAGGACAAGATGGAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGGAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATGTTTGCACCTCTGTAAAATGGAGATGAATCAACTCACGATTTAGCGTCAAatcaaaaaagttttaaaaaattgCTTTAATCGGACTAAATTAATGTCATTATAATTTGATATTATCTGGATCCCAAAGAACTGTAAAAAAGTAGCGCTGTAATTACATGTACATTACGTTAGTTAATCTCTAAAACTGATACTTAAACAGAACATTAATATGAAGCTCTGAACTATCGGCAGCTCAGCAGCCATTCCGATCCGAGCGCCATTTTGAGATCCTATTGACCTTCTTTGTTCAGCTGTAACTCTAATGGACGATAACGTTACTGGAAATGTTGAGTCATTGCTATCGTTATCATTTGTTAGCGTAGCTAAGCCAAATAGAAATCGACGACAAAGTGATTGACGCTAAAACTCGTAGCAACCTGTATACATTGAGTAATGTAGCTTAACTGCTTGATTGTACTTTAAGAACGTCAATTTGAGGCATAGTTACCGTCTGCTACAATTCTCTTATGCGACTGTAACGTTAGGAAGGTTAAAACCATGTCACTGGTCATCAAACAAGCAACTAAAAACATTAACTGTATACACAATTCACATTTTAGAATACTATAGCtcgaaaaaaagagaaatgtgtACTCACTTTTAAGATACGCAGTTAAATATGTTATATTGTGCTGGTACAGCGATTCTTCTTTCGGCTTCC
>TU229287
AATCTCTCATCTTTTATTCTGTTAGGTTGTCATGTAAATAAATTGGACAATTTATTGACCGCCCCTCAGACGCAGGACAAGATGGAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGGAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGCCTCCCCTCAAACGCAAGACAAGATGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCGCGATTCGCCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCTCCCCTCAGACGCAGGACAAGATGCAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATGTTTGCACCTCTGTAAAATGGAGATGAATCAACTCACGATTTAGCGTCAAatcaaaaaagttttaaaaaattgCTTTAATCGGACTAAATTAATGTCATTATAATTTGATATTATCTGGATCCCAAAGAACTGTAAAAAAGTAGCGCTGTAATTACATGTACATTACGTTAGTTAATCTCTAAAACTGATACTTAAACAGAACATTAATATGAAGCTCTGAACTATCGGCAGCTCAGCAGCCATTCCGATCCGAGCGCCATTTTGAGATCCTATTGACCTTCTTTGTTCAGCTGTAACTCTAATGGACGATAACGTTACTGGAAATGTTGAGTCATTGCTATCGTTATCATTTGTTAGCGTAGCTAAGCCAAATAGAAATCGACGACAAAGTGATTGACGCTAAAACTCGTAGCAACCTGTATACATTGAGTAATGTAGCTTAACTGCTTGATTGTACTTTAAGAACGTCAATTTGAGGCATAGTTACCGTCTGCTACAATTCTCTTATGCGACTGTAACGTTAGGAAGGTTAAAACCATGTCACTGGTCATCAAACAAGCAACTAAAAACATTAACTGTATACACAATTCACATTTTAGAATACTATAGCtcgaaaaaaagagaaatgtgtACTCACTTTTAAGATACGCAGTTAAATATGTTATATTGTGCTGGTACAGCGATTCTTCTTTCGGCTTCC

Function

symbol description
ubb Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to several human genes including UBC (ubiquitin C).
ubc Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBC (ubiquitin C).

NR:

description
PREDICTED: polyubiquitin-B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229276 False 1442 lncRNA 0.45 2 27291945 27297777
TU229286 False 1898 lncRNA 0.47 2 27291945 27297777
TU229287 True 1900 lncRNA 0.47 2 27291945 27297777

Neighbor

gene id symbol gene type direction distance location
abr abr,LOC103375456 coding upstream 3512 27136017 ~ 27288433 (+)
trnav-aac_10 NA coding upstream 12224 27279649 ~ 27279721 (+)
aspa aspa coding upstream 160650 27117211 ~ 27131295 (+)
LOC120543589 NA coding upstream 175906 27110705 ~ 27116039 (+)
LOC120544222 NA coding upstream 316455 26971320 ~ 26975490 (+)
cenpv cenpv coding downstream 260 27298037 ~ 27301502 (+)
ncor1 ncor1 coding downstream 16777 27314554 ~ 27373600 (+)
zswim7 zswim7 coding downstream 77124 27374901 ~ 27390229 (+)
timm22 timm22 coding downstream 199783 27497560 ~ 27500438 (+)
p2rx5 p2rx5 coding downstream 207380 27505157 ~ 27515889 (+)
G169060 NA non-coding upstream 210284 27038854 ~ 27081661 (+)
G169027 NA non-coding upstream 331306 26957695 ~ 26960639 (+)
G169018 NA non-coding upstream 452388 26838992 ~ 26839557 (+)
G169011 LOC108233807,LOC100703904,LOC106511527,LOC101466262 non-coding upstream 462261 26827103 ~ 26829684 (+)
G169010 LOC106511527,LOC107091377,LOC100703904,LOC107386668,LOC101466262,LOC108233807 non-coding upstream 464895 26824603 ~ 26827050 (+)
G169157 NA non-coding downstream 127376 27425153 ~ 27426322 (+)
LOC120543667 NA non-coding downstream 178508 27476285 ~ 27477131 (+)
G169209 LOC107090330,LOC102785725,LOC102220786 non-coding downstream 402341 27700118 ~ 27701522 (+)
G169215 NA non-coding downstream 415298 27713075 ~ 27713796 (+)
G169254 NA non-coding downstream 417618 27715395 ~ 27716931 (+)
G169042 stip1 other upstream 326905 26962206 ~ 26965040 (+)
banf1 banf1,LOC106523121,LOC104926323,LOC108233898 other upstream 604682 26681536 ~ 26687263 (+)
esrra esrra,LOC103363365,LOC100707827,LOC104926321,LOC106534575 other upstream 616150 26659358 ~ 26675795 (+)
LOC120544064 tmem164 other upstream 723445 26543796 ~ 26568500 (+)
nlgn2b nlgn2b,LOC104920019,LOC101475673,LOC100709892,LOC102787387 other upstream 1068500 26000063 ~ 26223445 (+)
shpk shpk,LOC102781293 other downstream 222254 27520031 ~ 27531315 (+)
ftr82 LOC104966639,LOC103359483,LOC104933521,LOC108233798,LOC106511051 other downstream 1498735 28796512 ~ 28802885 (+)
LOC120544198 vmp1 other downstream 1583957 28881734 ~ 28942332 (+)
G169789 map6 other downstream 2648097 29945874 ~ 29971107 (+)
uvrag uvrag other downstream 2713556 30011333 ~ 30113690 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G153485 NA non-coding CM030142.1 CM030142.1 6560899 ~ 6563478 (+)