G169612 (cltc)


Basic Information

Item Value
gene id G169612
gene name cltc
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28844424 ~ 28849113 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU230020
CCTGGGCTGAGATGCCGATGAGCAGGAGCCATTTCTGCTTGGCGTCAGTGCGGTAGTTGATAATCTGGCAGCCTGCCAGGCTGGAGTGGCGGTCGAAGACTTTCACAGGCTGCGAGTCTCCCTCCATGCTCCAGTGGTAGACGGCATTGTCAGTCACAAGTGCAACTGTGTTAAGGGAGATCCACTTCCAGAAGGTAACATCGTCCGTCATGGTATGTGCCTTCATCTTGCTTTTCATCTCGATGTTGAAGATCTGAAGGGTTTTGGCGGCTACTTTAAGTGCAATGACTTTGCTGGCTGGATTCATGATGGCGCTGTCGGCTGAGATGGGCCTGCGGATAGGTGTATTTGGGTCTGCCATGTCAATGATCACCACCTGAGTCTGCTCGCCCACCTTCTCCCGAATACAGATGAACTTATCCGACTCCATGGTTAGGGTGCTGAAGCCTATGTTGGATGGATTGATCCCTAAATTTTGGAGCTAGACacaaaaaaaggagggaaaaaggGAATGTTAGGTTGAACAGAAATAGC

Function

symbol description
cltc Enables several functions, including clathrin light chain binding activity; disordered domain specific binding activity; and low-density lipoprotein particle receptor binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; negative regulation of hyaluronan biosynthetic process; and receptor-mediated endocytosis. Located in cytoplasmic vesicle; lysosome; and mitotic spindle microtubule. Part of clathrin complex. Implicated in autosomal dominant mental retardation 56.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230020 True 534 lncRNA 0.50 2 28844424 28849113

Neighbor

gene id symbol gene type direction distance location
pdzd3b NA coding downstream 28866 28811383 ~ 28815558 (-)
ftr83 LOC104966638,LOC103395195,LOC103359484,LOC102224482 coding downstream 53306 28785102 ~ 28791118 (-)
ruvbl2 ruvbl2 coding downstream 61563 28774813 ~ 28782861 (-)
ankfy1 ankfy1 coding downstream 190940 28635713 ~ 28653484 (-)
zzef1 zzef1 coding downstream 211605 28594424 ~ 28632819 (-)
ptrh2 ptrh2 coding upstream 26877 28875990 ~ 28877885 (-)
rnft1 rnft1 coding upstream 122355 28971468 ~ 28977378 (-)
cxadr cxadr coding upstream 858094 29707207 ~ 29748583 (-)
btg3 LOC102786047 coding upstream 906614 29755727 ~ 29761675 (-)
c16h21orf91 LOC102786549,LOC102292364,LOC101464061,LOC103361253 coding upstream 957732 29806845 ~ 29826242 (-)
G169551 NA non-coding downstream 82779 28757543 ~ 28761645 (-)
G169550 NA non-coding downstream 88873 28753275 ~ 28755551 (-)
G169524 NA non-coding downstream 139803 28699821 ~ 28704621 (-)
G169447 NA non-coding downstream 445244 28396980 ~ 28399180 (-)
G169417 NA non-coding downstream 487047 28357011 ~ 28357377 (-)
G169620 cltc non-coding upstream 16368 28865481 ~ 28867088 (-)
G169640 NA non-coding upstream 97197 28946310 ~ 28946656 (-)
G169648 NA non-coding upstream 150367 28999480 ~ 28999737 (-)
G169678 NA non-coding upstream 299971 29149084 ~ 29150478 (-)
LOC120544741 NA non-coding upstream 819269 29668382 ~ 29678865 (-)
atp5l atp5l,LOC102215954 other downstream 35983 28804378 ~ 28808441 (-)
ube2g1a ube2g1,ube2g1a,UBE2G1,LOC107597432,LOC107722775,LOC107712369 other downstream 180373 28654877 ~ 28664051 (-)
LOC120575713 mlxipl other downstream 496934 28314169 ~ 28347490 (-)
srrm3 srrm3,LOC103395181,LOC102790399,LOC102288945 other downstream 531291 28217243 ~ 28313133 (-)
LOC120544668 tspoap1 other downstream 721806 28047607 ~ 28122618 (-)
LOC120544028 LOC107730113 other upstream 913336 29762449 ~ 29796427 (-)
LOC120543707 c2cd2 other upstream 1033693 29882806 ~ 29901937 (-)
map6a map6,LOC102787944,LOC103142112 other upstream 1096555 29945668 ~ 29971080 (-)
ei24 ei24 other upstream 1433967 30283080 ~ 30294530 (-)
LOC120543993 LOC103357895,LOC102211230,LOC102791592,LOC101481864 other upstream 1457736 30306849 ~ 30341246 (-)

Expression


Co-expression Network