LOC120544741


Basic Information

Item Value
gene id LOC120544741
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 29668382 ~ 29678865 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU230211
ccctcattggactaactTTGTGGATACTACCGTGTGCGTGCATGAATAAGTTTCCCAAGCCGCTCCCCTACCACGGGCCTCGGGAGTACAACCTACTCGGCGACGAGTTCCCGGAATACCAGACCGTGCCGACGCCACCCGCGCGGGTCCCAGAGGAAATTGAGACGAAGAGCTCCCGGTCCGAAAGGGCTAACCGAAAACACGAG
>XR_005636547.1
AacgtggaacgctatcacactttccttgatcccctcattggactaactTTGTGGATACTACCGTGTGCGTGCATGAATAAGTTTCCCAAGCCGCTCCCCTACCACGGGCCTCGGGAGTACAACCTACTCGGCGACGAGTTCCCGGAATACCAGACCGTGCCGACGCCACCCGCGCGGGTCCCAGAGGAAATTGAGACGAAGAGCTCCCGGTCCGAAAGGGCTAACCGAAAACACGAGGGCAATCACGGCCGGCAGGCGCCTCGTTAAGCGGCCGGCACCGATTGGCGGGGGTGGGTCCTCCAGCACCTGCGGCCGATGACGGCTGCGCCCCCGCCGGCTTGTATAAGAGCAGGCGTGCGCCAGGGGCGGCCGAAGACTCCCGGAGGCGGCCAAAGACGGAGGAGTCTCTGCGGGAGGACGCGGGGCGGGGGCCGGCCGACCGACCAGCAAGGTACAACGCAGCTGACTGGAGGCTTGGCATGATGTCTACCGATCGCAGTCCAATCGGCCACGTTAACTCAAAACACCTGGGAGACACCGCTCTGCTGACTGGCTccaatctctctctgtcttgtcGCAAAGCACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230211 False 206 lncRNA 0.59 2 29675416 29678834
XR_005636547.1 True 587 lncRNA 0.62 4 29668382 29678865

Neighbor

gene id symbol gene type direction distance location
rnft1 rnft1 coding downstream 691004 28971468 ~ 28977378 (-)
ptrh2 ptrh2 coding downstream 790497 28875990 ~ 28877885 (-)
pdzd3b NA coding downstream 852824 28811383 ~ 28815558 (-)
ftr83 LOC104966638,LOC103395195,LOC103359484,LOC102224482 coding downstream 877264 28785102 ~ 28791118 (-)
ruvbl2 ruvbl2 coding downstream 885521 28774813 ~ 28782861 (-)
cxadr cxadr coding upstream 28342 29707207 ~ 29748583 (-)
btg3 LOC102786047 coding upstream 76862 29755727 ~ 29761675 (-)
c16h21orf91 LOC102786549,LOC102292364,LOC101464061,LOC103361253 coding upstream 127980 29806845 ~ 29826242 (-)
ripk4 ripk4 coding upstream 154725 29833590 ~ 29850225 (-)
prdm15 prdm15,LOC102786849 coding upstream 170920 29849785 ~ 29879284 (-)
G169678 NA non-coding downstream 517904 29149084 ~ 29150478 (-)
G169648 NA non-coding downstream 668645 28999480 ~ 28999737 (-)
G169640 NA non-coding downstream 721726 28946310 ~ 28946656 (-)
G169620 cltc non-coding downstream 801294 28865481 ~ 28867088 (-)
G169612 cltc non-coding downstream 819269 28844424 ~ 28849113 (-)
G169766 NA non-coding upstream 99827 29778692 ~ 29789550 (-)
LOC120544726 NA non-coding upstream 246202 29925067 ~ 29926453 (-)
G169905 NA non-coding upstream 367276 30046141 ~ 30115419 (-)
G169912 LOC103363040,LOC108244715 non-coding upstream 585685 30264550 ~ 30266434 (-)
G169927 NA non-coding upstream 673008 30351873 ~ 30365637 (-)
atp5l atp5l,LOC102215954 other downstream 859941 28804378 ~ 28808441 (-)
ube2g1a ube2g1,ube2g1a,UBE2G1,LOC107597432,LOC107722775,LOC107712369 other downstream 1004331 28654877 ~ 28664051 (-)
LOC120575713 mlxipl other downstream 1320892 28314169 ~ 28347490 (-)
srrm3 srrm3,LOC103395181,LOC102790399,LOC102288945 other downstream 1355249 28217243 ~ 28313133 (-)
LOC120544668 tspoap1 other downstream 1545764 28047607 ~ 28122618 (-)
LOC120544028 LOC107730113 other upstream 83584 29762449 ~ 29796427 (-)
LOC120543707 c2cd2 other upstream 203941 29882806 ~ 29901937 (-)
map6a map6,LOC102787944,LOC103142112 other upstream 266803 29945668 ~ 29971080 (-)
ei24 ei24 other upstream 604215 30283080 ~ 30294530 (-)
LOC120543993 LOC103357895,LOC102211230,LOC102791592,LOC101481864 other upstream 627984 30306849 ~ 30341246 (-)

Expression


Co-expression Network